RNA id: AMCG00018612


Basic Information

Item Value
RNA id AMCG00018612
length 5037
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00018612
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15421915 ~ 15428751 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTGCTATACGTTTGCATTGCATGTACGAATGGCATAATGAAATCGATATCGCGATATAAAGACACGTCGTGGCGGTATACCGCGCGGTGGCGGGCTCGAGTCGCAGGGCGGAAGCGCAGTGCGCGGCCGACCGGAGTGTTTTGCTGGAAGCAGCCTCTTCCGGGTCTGAGCACCGCGCAACTCATTATTTTACCCAGCCCGGCCACAAAACGATTCTTTTTTTGTAAGCAGATCGTGTCTTGCATTAGTATTGAAGCCATGAAGGCAGTGAGGTCGCTCGCAATGGCCGCGGTTCTTGTTGCGTCCTTGTTCTGCGCAGAAGCGGCCAGGAGTCGGAAGGACTCGAGCAGCCAGAATAGTTTCAGACGCGCGGCTAACGGCCTCCACCAGGCGCTGAGCAACGTCTTCGGAGAGGACAGCATCCGCGCTTTGCACAAGTTTTTCTCCAAGACCACAGAGCGCTTCGTCTATGGGGTGGACGCATTCTTGGACACAGTCTGGAAGATATGGACAGACCTTTTAGATGTTCTGGGAATTGACTCCTCCAACCTGAGCCACTACTTCAGCCCAGCTGCAGTGACCAGCTCCCCAGCCCGAGCTCTTCTGTTGGTGGCGGCGGTGCTGCTCTCCTATTGGCTGCTCTCGCTCTTCCTGGGTGGGTTCTTCTACATCCTGCACGTGCTGTTTGGCCGCTTCTTCTGGCTGGTGCGCGTCACCCTGTTCGCCCTCTCTTGCCTCTACATCCTGCAGAAGTTTGAGGGCGACCCCGAGCGCGCCATCCTGCCCCTGTGCTTCGTAATAGCCATCTACTTTATGACCGGGCCTGTGGGCTCCTACTGGAGGAGGGGCGGTGGAGGAGGCAGCGGCAACACCCTGGAGGAGAAGATCGATCAGCTGGATGGACAGATCCGCCTGCTCAACATCCGCCTCAGCCGCGTCATCGAAAGCCTGGACCGCAGCAGTGAACAGTGACTGTGAGCCGGGGACACCCAGGCCCTGAGGAAGAGGGctggaaggagggagagagggagggaggcagggaaggAATGGAGAATACATGTTCTGAGGTCCACTGAGGGTACAGGACAGCAAAGCAGGGTAGAGCCGATACATGAAGCCCACTTTGCTGGCCAGgaccctgttttttttattatgatatcTTACTGTACTGGAATTATTCCCCCCCCCAACCAGTTTTCACCTCCTGTAGTATATTCCGACATGCTTTTAAATTCCCCACCTCCTTCATTAAGCTGAAAGGTTTAATGGATGGGGTGATGTCTTTGAGACGTTTGCATGATAATTTTGTTTAGCACTGTacgttgttgttattttattttgtgtttttatgttatgCTATCAATTAAGCCTTTCAGGACATGTTTATAGCACTGGTGTACAAAGCAAACCACACTACAGGGGGTTAAAACGGTTTCCTACATGACTGGCTCTTGGAAGTTTCCGTGATGCtcagcagttgtttttttgaagACCGCATAaatagaagaaggaaaaaaaataatacaccatTGTAATTCCATGTTCCTTTCGTTGAGTTCAGTCTCTGCCAATTCTCCATGTTGCCCGGGAATGTAGATCTTGACCCTCAGTTCCGTCCATGTGTTGATGAGGAAAGGATATCATTTctaatctttattattaatttattctgaagAAGTTCAGACCATTGAACCCCAGTTCACTTACTTTTGTTACTGTGTAGTGTGTCGGAGAACTTCTCTGCAGTTCTGGGGTCCTATTTAGGTCTTAAGTGCACTGGATCACCTATTCTAGTATGAGAATGAAGTGGTTTGGCAGAGCTCTGCTAGTTTCTTTAGGATGTTTTTTGGAATTGATTTAGATGAGTTCCTCTCAGTGGTTAGATATCTGTTGAGAATCATGGCTGTGATTTCCCTGGATTGAAATAGAGGTTATAGTTTCCTGAATGGATAAAGTAAATCTTGGAAATTAACGTTACCCTTTAATGGGACCTTCCTCCCTTGTTCCACCACATTCCCTTTTCCTTCTATCCAATATTATGTGGTCTTCTTTGATCcaactttacttatttttaaaaagaaggcAATTCTTGTCCAGCAAATTTCTGTCACTGAAATTTTGGGGGgcaaaaaacagttaaaaaacaactaGTGTAATGTTGTGTCCCCAAGTCTGCACAAGTCAGTGGCACCTCTACACTAAGAACAGCACAGTGGCCCATCTTTCCCTCAAGGACTGGCTGTTCTGTGAGAATCTGTCCACTAATGCTGAACACAGGCTGCCCATGTCTGGGGCCACATCCACGCCAAGAGCCAATCTGCCGCCACTATGTGTAAATAAGAATTCCCAGCCCCGATTCCCCTGACAGCCCAGGACTCGAAAGCTTGAACAGTTAAACACTGGATTTTTAACCCTGTAAGTCTTTGCTCGTAATTTCTTTTGAACAACGCGGCAGAACAAAAAAGCACCAAACCAGTCTTGAGTGAACTGTCACCATCCCATCGTAGCAATATTCTATTCAATATCAGGACTTTTTTTGTATACTGTGGACCAGTTAAGTTGGTGTCCACTGCCGAGAAGGAAGCAAGCGGGTTTGGTTTAGGGGCAGGAGGGAGCTGTGTTGGAAGACATGTTAAACTCAGGGAGatgaaacataagaaaacattattattattatctcttcACCTATGTTGGCCCTGTTTAGGCATGGGGCTGCTCAGAGCCACGGCCTTCCAGGGTTAATTCCATGTTCCATTAGGAAAATGCCTTCCAACACGAAGCCTCAGTCCCTTAGGAGATTTGATCTGTTACCAGAGAGTTTGGATGTTTCtgccattttgtatttgttgtttttttagtagttgttgtagttttgtaaatcggggtgggggggattcaaTAGTGAAAAAAGCATGCATCTACTGTATTATTTTCGTTGGGCAGCTGTCTTTTCCTACTTCCTGTATGTGCTGGCTATAGCTTAACGTGCAGCTCTGCAATCGGATATAAGCTATTATTTTGCATATAGTAATACAGGTCACCCGGGAGGTTCTTGACTGGAAGCTTGGCTCTGCCTCTTCATAACTGTGTGTCATGTTGACCAGGTTTGTGTCCACTCCTTGCGCTCTGTCCTGCAGAGGAGATTTAAAGCCTCGGTCGTATTACAAGTGAATCGTGTATTGCTTGGTCTCTGTTGGATTAAATCCTTCTGTTTTCATGCTATGCAagacatttattattactgcagaatttttaaaaatctactGCATTTGACACTGCATTGACTGTTGTACGGTTCAACTTGGTTATTTTAAAGTCAATTATGCTATAATGCCAAACTCACGAATGCACATATTCAGCCACTAGACATATTCTGCCAATGTATCACTGACCTTTGCACTAATTTATGTGTTCTGACACATGgatgtgtgatttgtgtttcacaggttttttttttaaataggtgtGAGCCTCCATCTGATATTTTGGATggacagagacaaaatgatacCTTTGCTCAACTTCTCAGAATACTTTAAAAgatattttatcttttgaatTATGTGAGAAtcaatttttcatttgtttagaAAATACCAGCATGAGCAAATCCCCAGGGCTCCGAATCATTCGGAAGCTTCTGGGTTGGGAGTTGCTGTCAGCAGCTGTGCTTTAAGGTGATTGTTAAAAGTAAAGTAACCGCTGTAATGAGGATGATGATTGAGTCTGAAGTTTAAACTAAATGATGCACTTGAAAGAAAGATGAAACCCAATCAATCATGATTTTTTCCCCATAGAAAGTCCTTCGGAGTTAATGTGCTTTGATAGCAAAGCAGCCACATTATAAGTGTTTCCAATTGTTCAAACCtagaaagtgtatttttattcccTGTCCCTATTCAACTGTGTCATGTTCAGCACAGATCCCATTTCTCAATCCCTTGCAAGGAGGGGGcaagaaatataaacatgtagCTGAGATTTTTTAAAACCTAAAGGATGATAGGCAGGATGATCGGAGtccattttggttgttttgagaAAAACTTCAATGGCACCTCAATGATTTTATATCTAAAAATTATTCTATTATAGAACAGTGCCCTTTGATGTTGGGAAACATTAGGCACTTTATTCAGCTGCTGCGTGTATTTGGTTTACAAGCGTTCAAAGTGtgcaaatttaaaattatgaaaattgacTTGAATCATTCTACCCGTTAACTCTTTTctcaaactcaaactcaaatTTCCTGTTTGGCATCAGTTTCAGAActgttaaataagtaaatggtGAAGAAGGAAGTTATAGCTGTTATAGTGTATactagtgttttttgtttttcctgcatgCATCAACAACACATGCTTGCATTGCTTTATTTGACTGTACatactgttttttattaaatatactgAATTAACCCAGACCTCAGAAATGCCTGCTCAGTTGCTTGACAGTCCATCCCTTTTGTGAATGTAGTGTTGAAGTGTTAGCTCGGCACAATCCCCCTTCTCTCAACTGTGTTTCTATGGTGCTGCTTTGCTTCTGTTCAGATGTGTGTGGATCACAACGATGCCAATGTGAACACGTTCCACTCCAGTCCGTCTTTGTTTCTTCCTTGCAGGAGCACTGAAATCTTTTGAGTGAACGCTTTTATTGGAAAAGATCTCACTAGCCAGTTATTCAGTACGTTTATTTTTATGGTaattattcagtgttttttttaatatcaatttttcAGTACTTTCAGTAATTTTTCGGGGTGTATATCTGAAGCCTGCTATTGATTTGTAGTGTGTCATATGTTTTGTGGTGATACGTTTCTTCAAGACGTCCTTTTACAATGATACTGAACGGTTCccgaataaatgaataaataaacttaaagtTTTATCATGAGTATCTTCCCTGAGTCTTCACTGCAaaaaacctttattttgtattgtttggttATGAGAAGTGAATGGAAATTGTATCCACACTAAAAACTTCCACAAGTTTGGAAACCCTGTGTGTTGTTAATCTGttctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147223 lncRNA downstream 207484 15214168 ~ 15214431 (-) True G117501
TU147187 lncRNA downstream 441531 14979041 ~ 14980384 (-) True G117472
TU147151 lncRNA downstream 564320 14856420 ~ 14857595 (-) True G117441
TU147148 lncRNA downstream 586190 14833856 ~ 14835725 (-) True G117438
TU147142 lncRNA downstream 637602 14780287 ~ 14784313 (-) True G117432
TU147287 lncRNA upstream 69911 15498662 ~ 15516282 (-) False AMCG00018617
TU147288 lncRNA upstream 69911 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA upstream 87803 15516554 ~ 15518181 (-) False AMCG00018617
TU147400 lncRNA upstream 593847 16022598 ~ 16025073 (-) True G117646
TU147479 lncRNA upstream 866079 16294830 ~ 16296445 (-) True G117710
AMCG00018613 mRNA downstream 3453 15379743 ~ 15418462 (-) True AMCG00018613
AMCG00018610 mRNA downstream 129830 15237160 ~ 15292085 (-) True AMCG00018610
AMCG00018609 mRNA downstream 244245 15171962 ~ 15177670 (-) True AMCG00018609
AMCG00018604 mRNA downstream 464029 14957253 ~ 14957886 (-) True AMCG00018604
AMCG00018605 mRNA downstream 473648 14939774 ~ 14948267 (-) True AMCG00018605
AMCG00018617 mRNA upstream 75700 15504451 ~ 15518315 (-) False AMCG00018617
AMCG00018614 mRNA upstream 97539 15526290 ~ 15535846 (-) True AMCG00018614
AMCG00018615 mRNA upstream 123953 15552704 ~ 15569734 (-) True AMCG00018615
AMCG00018616 mRNA upstream 141521 15570272 ~ 15586730 (-) True AMCG00018616
AMCG00018621 mRNA upstream 204695 15633446 ~ 15636944 (-) True AMCG00018621
TU147067 other downstream 683603 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 901040 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 2166146 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 3510579 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 4219027 11199578 ~ 11202888 (-) True G116428
TU147284 other upstream 69911 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 69911 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 1580147 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 1797339 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 1797339 17226090 ~ 17256271 (-) False G117823

Expression Profile