RNA id: AMCG00018613


Basic Information

Item Value
RNA id AMCG00018613
length 5180
RNA type mRNA
GC content 0.46
exon number 19
gene id AMCG00018613
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15379743 ~ 15418462 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAGACCGGCGCTCGGCTGTGGCGCGGCGGCCTGTCAGGGAAGTGAAGTGGCACTCCTGGGGGAACGGGCAGCCCGAGGTGGCATCACACCGACTCACGCTTGCGGCGAGGAAGCACTGTGTCCCGGGCAGCAGCATGTCGAAAGACACCGAGGGGATGAGCGAGGAAATCATGGAGTCCAACGTGCTGTGGTACCCGGACTCCAAGAAGAACACCCAGATGGACCGGTTCAGGGCGCAGGTGAACCGGGATTTCGGGCTCCACCTGGCTAACTACAGTGATCTGTACCAGTGGTCAGTGGAGAATTACAATGTGTTCTGGGCTGAGGTGTGGAAGTTCTGCGGGATTGTCAGCTCCCAGATGTACGAGGAGGTGGTTGACATGACAAAGAAGATCTCTGATGTCCCGGAGTGGTTCAGAGGCTCTCGCTTGAACTACGCGGAAAATCTCCTGAAGCACAAAGATCAGGACAAAGTCGCTCTTTATGCAGCAACGGAGGCCAGGGAGGAGATAACCAAGGTGACCTTCAGGGAGCTGCGCAGAGACGTGGCGCTGTACGCCGCCGCCATGAGGAAAATGGGCATCAGGACCGGGGACAGGGTCGTGGggtATCTGCCCAATGGGATCCATGCGGTGGAGGCCATGCTAGCAGCTGCGAGTATTGGAGCCATATGGAGCTCCACCTCCCCGGATTTTGGAGTCAATGGTGTTCTGGACCGTTTCTCCCAGATCCAGCCCAAGCTGATCTTCTCTGTGGCCGCGGTGGTGTACAATGGCAAGCAGCACGGCCACTTGGAAAAGCTGCAGAACGTCGTCAAAGGTTTACCAGATCTGAAGAAGGTGGTTGTGATCCCTTATGTGCGCTCAAGACAGGAGACGGATCTCTCCAGAATCCCAAACAGTGTGTTCCTGGAGGACTTCCTGGCCACGGCGAAGGATGGAGACCAGGACCCTCAGCTGGAGTTTGAGCAGCTTCCCTTCTCGCACCCTCTCTTCATCATGTTCTCCTCGGGCACCACCGGGGCGCCCAAATGCATGGTGCACTCGGCAGGGggaaCGCTCATTCAGCACCTAAAGGAGCACGTTCTCCATGGCAACATGACCAGCAGTGACGTCATCATCTACTACACCACGACCGGCTGGATGATGTGGAACTGGCTGATTTCCTCGCTGGCAGTCGGGGCGTCAGTGGTGCTGTACGATGGCTCTCCTCTCATGCCCACTCCCAATGTCCTCTGGGACGTGGTGGACAGATTAGGAATAACCATTTTTGGGACGGGGGCGAAGTGGTTAGCGGTACTAGAAGAGCGGAACTTAAAACCAGCCGAGACCCATAGCCTGCAGACGCTGCACACCATCCTGTCCACGGGCTCCCCTCTCAAACCCCAGAGCTACGAGTACGTCTACAACAGCATCAAGAGCAACGTCCTGCTGGGCTCCATCTCGGGTGGAACGGACATAGTCTCCTGCTTCATGGGGCAGAACTTCACCGTGCCAGTGTATCGTGGGGAAATCCAGGCACGCAATCTGGGAATGGCTGTGCAAGCCTGGAACCAAGAAGGGAAGCCAGTCTGGGGTGAGAGCGGGGAGCTGGTGTGCCTCAAACCCATCCCCTGCCAGCCGACGCACTTCTGGAACGATGAGAACGGCAGCAAATACCGCAAGGCCTACTTCTCCACCTTCCCAGGGGTATGGGCACACGCAGATTACTGCAAAATCAACCCCAAGACTGGAGGAATAGTCATGCTTGGCAGaagTGATGGCACCTTGAATCCAAATGGAGTTCGATTTGGAAGCTCAGAAATCTACAACATTGTCGAAGCTTTTGAGGAAGTGTCCGACAGCCTTTGCGTTCCCCAGTACAACAAAGACGGCGAGGAACGGGTGATTCTGTTCCTGAAGATGGCCCCCTCCAAAACCTTCAGCCAGGAGCTCGTGAAGAACATTCGCCAGGCTATTCGGCTGGCGCTGTCTGCCCGCCACATCCCCGCCCTCATCCTGGAGACTCGAGACATTCCGTTCATCGACTTAAAGCGGCTTCAGCGTCGTAAGAGTGAGATAaaatattcagatattcagatgctatttctgcttttcacaaacacagaaccGAAGTACACGATAAGCGGGAAGAAGGTGGAGGTGGCCGTGAAGCAAGTGATCGCAGGAAAGGAGGTCACCCAACGAGGAGCCTTCTCCAACCCCGCCTCGCTAGATCTCTACAAGAACCTTCCTGAGCTCCAGGGCTTCTGAAAGCAGCGTCGGCGAGGACCTAAGACTCCACCGGGACATCTTGTTTCATGGGACTATTCAAAGCTGGTGATTCAAATCATCCAGACTCGGAAAAACACATGACCCCGTCCACATTGAGGGAAAGATCTGGTTTGGTTTGGCACCATGGCAACACAGGAaaacgtgtgtatatataacttttttgtttttgtttttttaatatatatatacatttttttattgtacatttcatagtttcctttttttctttagctTAGTGCTGAGGCAGTTTAACATGCCCTGTTAAGAAAAGAATAATcccaaaacaattaattaatatatgatatTGCTGATGAGTACACTTCCTGGAAGCTAAAACAACCTCAAAGGCCCCATAGATAAACCAGCTATCCATTCTGAAGTGAGTGGTGAGAAAATACAAGTGAACGCTTTTAAATGATGGGAAAATGTCTTAAGCCAGATCCTTCCCTCCTTTCCTGTACTAAGGCAGGTTTTGAGTACGTAAGATGATAGAAGCCCCCACCCTCatagaaaaacagaatgaaaactcCTTCTTAGCTTCAAAAGTAATTTGGAAACACGGGAATGTGTGTGCAAATGCTCTGTTTGAAGTGGCTGCTAACTAAGGGGAGGATTTGGACAGTGTAGGACCTAAAGCCAGGGGCCAGTCAGATATGTGGGGCCCCTTGCATAAGCTCAAACTCTCAGTCAGCAGGTGAAGCTGTAGAATCTGGAAAGTCCGGGTGACGTTTTCTTCTTCGAAGTTTTTTGTCAACCTTCAGTTTTTTATCCACACTAACACACCGGCAAATCGTCCCGTCGTCGAGTCATGGCCTTGTTGTCCTGACTTTTTAAAGCAGCGCTGTCTCGGAGGCCCGCCCTTAGTCCACAGGGTCCGTAGAACTTCAGTGCCAAACGGTGCCAGAAAAGCGCGTTGCTAAATCGAGGGTGGAAACAGAACCTGAAAAGCTGCCCCCTATCTCCGACTATGTATTGTGAAATTCCGttactttcaattattttacatgtttatcaCTAAACTTGGATTGGATTGTTTGACACaaatgatcttttttttttaaataatgtattgaatacTGTACATGGTGTAGGACTACTCCAAATCTACTCTCAAAACTCAAACTTGAAACAGCATATGTGTTatcttttacaatgtttttggATGTGCTTTCATTGTACTTTTGTGGATTTTGTACAGGTAGCAAAAGGAAAAGCTGTATATACTGCTTAAGAACTAGGAGGCCAAGCAAATGAGACATCACATTGTAAAGCAGATAGTTTGCATGTCACACTGGAATcatttgaaacatgtttgtgtgagtttttttgttttgtttaaatctttAGAAACtctataatttttatttaagaGGCACGGATGTCCAGaaaatgattcaattaaatgcataattcatATGGTCACTTGGAAAAAAGGGTATAGATTTTATAGCTTAATTGGACTTAGCAGTGCAAACATGTCGTGTTCTCTGTAACCACAAAGTTTATGGAAATATACTCCTCTCTGCAAGCCGGGCTGAGAACTGAATCTGAAACGAcatcctaatttaaattaatgcaaaatgacaaaaaaaaggtGAGAGGGAAACTCAGTGACAGTACTGCAGACACGTATACTAAAAACACAGGGGCCCCGATGGAAAAGATTCATATCGACAAACTGGAACACAGAAAAAGCAATCGCAAACCTGAAAAGCTTTTTGCTCCAGTGTAAAATGTGCAGCTTTCTATCTTCAAGTATTTCTAGTTCATATACCAAAACTCTTcagagaaaagtaatacatgaACAGAAATGACATAATATACAATCCATAAGTGCTTTTTGTCTGGCTACACCTCTTGCCAAATGTGCGTTACTCTCAGAAATACCAGGAGTATGTTGTGGGCCGAACATAAAAATTGAGATGGAGATGTGATTTGTTGTGCCGATTCAGCCAACGTGCCCCCATGGTTGGGCCTTGAACCCCGGATCCTTTGGCATTCTTCCTGTTTGGAAACGAGGCGTTTTAACACCAAAATACCAGCCCCTGGGGCAGGAAAGTAGAAAaggcttttattgtttttattttttctgaaacctttgttttattttttcttcaaagagCAGGGATGTTGCTTGTACGTGTGATTGTAGCTGTGCATGTGTCACGCTGACAAAAGCCCATACAGCTTTAATCGTTATCAATGTGTGAACCAATGTTGGCAAAGAGTCTTCTTTTTTATTcccgtttttcttttttcctttcaaggTATTGTGTCACAGTGCTGTCTTGCTGCAGATGCTGTTTGTACCATTGAGTGTTGAAactctgtaaatacatttgatcagtgttgtttttgattgtgtttttctctgcGTCGAGGAAAGCCCAATCAATGCTGTCTGATGTCATCGCAAATGCTACTCTCGTCTTCTTCTGACCAAAGTTTCAGGACTGGGCTCTTGTGATCAGGGAACAGACACCACAAAAAACAGTCTCTTGTTAGACCCAGACCATGTTCAGATGCATTCTGTATGATACACTATCCATTGTGTGTCCAGAGCTCTCAGTACTGTGATAcaaatgccttttttcttttcaaaatcataaCACATTGACTAAGCAATAGGTAACTGTTCAATGTTTGTAAGTGTTAAAATCcccatactttttttttttaagtacaatttTTAATATTGAAGGTGAATTTTATTTGAGAGTTGTCATTTCtcctttgtttttactttaattttttaacttttattaatgtgcatcaaatgtaaatgtgcttCGTGGTCTATGTGTAGACTAGATGAAGATAGTCTTTCACGGTAagatatatgcatatatatatctatatatacatacatatatttgattatatacagtactgtatctgTCAAGAG

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0030729 acetoacetate-CoA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01907 AACS, acsA; acetoacetyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147223 lncRNA downstream 165312 15214168 ~ 15214431 (-) True G117501
TU147187 lncRNA downstream 399359 14979041 ~ 14980384 (-) True G117472
TU147151 lncRNA downstream 522148 14856420 ~ 14857595 (-) True G117441
TU147148 lncRNA downstream 544018 14833856 ~ 14835725 (-) True G117438
TU147142 lncRNA downstream 595430 14780287 ~ 14784313 (-) True G117432
TU147287 lncRNA upstream 80200 15498662 ~ 15516282 (-) False AMCG00018617
TU147288 lncRNA upstream 80200 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA upstream 98092 15516554 ~ 15518181 (-) False AMCG00018617
TU147400 lncRNA upstream 604136 16022598 ~ 16025073 (-) True G117646
TU147479 lncRNA upstream 876368 16294830 ~ 16296445 (-) True G117710
AMCG00018610 mRNA downstream 87658 15237160 ~ 15292085 (-) True AMCG00018610
AMCG00018609 mRNA downstream 202073 15171962 ~ 15177670 (-) True AMCG00018609
AMCG00018604 mRNA downstream 421857 14957253 ~ 14957886 (-) True AMCG00018604
AMCG00018605 mRNA downstream 431476 14939774 ~ 14948267 (-) True AMCG00018605
AMCG00018606 mRNA downstream 456736 14899812 ~ 14923007 (-) True AMCG00018606
AMCG00018612 mRNA upstream 3453 15421915 ~ 15428751 (-) True AMCG00018612
AMCG00018617 mRNA upstream 85989 15504451 ~ 15518315 (-) False AMCG00018617
AMCG00018614 mRNA upstream 107828 15526290 ~ 15535846 (-) True AMCG00018614
AMCG00018615 mRNA upstream 134242 15552704 ~ 15569734 (-) True AMCG00018615
AMCG00018616 mRNA upstream 151810 15570272 ~ 15586730 (-) True AMCG00018616
TU147067 other downstream 641431 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 858868 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 2123974 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 3468407 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 4176855 11199578 ~ 11202888 (-) True G116428
TU147284 other upstream 80200 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 80200 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 1590436 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 1807628 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 1807628 17226090 ~ 17256271 (-) False G117823

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060150 False 2817 mRNA 0.47 18 NC_007116.7 18827314 ~ 18897482 (-)
grasscarp (Ctenopharyngodon idella) CI01000071_01452292_01490229.mRNA True 4652 mRNA 0.44 21 CI01000071 1450564 ~ 1490912 (+)