RNA id: AMCG00018615


Basic Information

Item Value
RNA id AMCG00018615
length 5958
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00018615
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15552704 ~ 15569734 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCCGCAGGGCAGGCGGGGTGGCGGTGCGGGTGTCGGGCAGCGGAGACACGGTCTGCAAACCCGCAGATGAGGAGTGCGCGACTCGCGGATCCCCGGAGCTCCACTGCGCTGCTGCACTTCGCCAAGGAGGTTGGGCTCGGTGCCCTGTACTGACTGGCCCAGAACTCAATGAGTCGCCCAGGGCCACTGTAAGGAGCCACTGCAGGCAAAGTGACAATGGGAACCGAGGGAGAGGCGGCCCAGCGCTTCCTGGAGGAGTTTGTGAAGGAATTCCCCAACCCACTGGGCCCCGAGGAGCCCCTGCCTCTCAGCCCCCTGAGCAACACAGTCAGCCCAGCTGAAGTCCAGGGAGAGAGCCTGGATCTGGCCCTGCGACTGCTGAGAGCCAGGAATGCCCCGCCAGCGCTGGGTGCCGCCCTGTCCCACGCCGCTGTGTCTGAGCTGCTGAAGAGTGACCTGTCCTCCTTCCACACCAGCCCAGCACCCGAGCAGGACTGTGACTTGTTGAAGTCGGAGCCCCTACAGCGGAGCTTCCTGAACCGACTGCGCGAGGTGTGCAGCGCGTGGCAGTGGGAGCCTCCCCCCGTCCCGTCAAGACGGCGCTACCTGCTCACCTCTTCCCACGCCATCCGCAACACACGCCGGAAGATGGAGGACCGGCACGTGGAGCTGTGCGACTTCGACCGACTGCTTGGCCTGCAGGACAACACCGAGCGTGCATACTTCGCGGTGTTCGACGGCCACGGTGGGGTGGACGCAGCCACATTCGCCGCCACGCACCTGCATGTCAGCCTGGGCCAGCAGGAGGCGCTGCGGAGCGACCCTGCCATGGCTCTGCAGAAGGCCTTTGCTCACACGGACGACTTGTTCAGGGAGAAAGCCAAAAGAGATGCTATGCTGGTGCGACAGGGCCAGGCCGTCACCCTGATGGAGCCCCACAAGCCTGAGAGAGAGGACGAGAAGCGACGGATAGAGGACTTGGGCGGCTGTATAGTGTTCATGGGATGCTGGAGGGTCAACGGCACATACGCGGTGTCCAGGGCGATCGGTGACTTTGACCAGAAGCCCTACATCTCCAACGAGGCGGACTGCAAGACTGTCCCGCTGTCCGGCGCGGAGGACTATGTGCTCCTGGCCTGCGACGGTTTCTTTGACATCGTGCAGCCGCAGGAAGTTGCCGGGCTGGTCCTGGAGCACCTGCAGCAGAGTGGGGGACAGGGTGTGGGGGCTGCCCAGAGCCTCGTGGCCCGAGCCAAGAGCTGCGGCTCCACCGACAACATCACCGTGCTGCTGGTTTTCCTCCGGGACCCCCAGGACATCCTGCGCGAGGCTGCGGCGGGAGGGGGGCGGCAGGCCGAGACCCAGCCGCCCGAGTTCGTCTTCTTCCGAGACAACGGAGAGAGCGGACAGATGGAGGCGGTTACTGCCGAGACGAGTCGGAGCACAGGAGGAAAAGCAGAGGAGGGAGCTAAAGAACAAAGCCAATAAACAAACGAAAATTGTTTAGAATGAGAAAAGagaaccacagaaaaaaaacgCAGGATTTCTGGCTTTTGCACTGCTTGTTTTCGCTCGCTGTTGCCAACCTTTGGAAATAAGTGTTCTTGCGGTAACTGTGACGAATAACTGCAGTGGTTGGTCATTTGCGATAGTTGGTTATTGGCCACAGCTCCTGGTCTCGCAGGGAGGCAGCCATGTAAACTATATGCCGATTGTGTGTTACTGAGACAAATCTGCAGcaccaggggtgggggggtacagCCCTGCCTGTTGCCTCGTACTGAGCTGCCTCCTGCGTCTGTGAACTGAGGTGCTAAGAGGTTTCAGCATCCAGTTACTATTGCCTGGCCTCCCTCAGAGACCGATTTAATAATGCTTTATGCGTGTGGTGAGAGCTTTGTTATACTGTGCTggtgttcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatttgtttttttaataagctttttgtttgtttgtctggtaTCCTTGTGATCTGTGAGCTGTGCTTTAAATAACTCCCTTTATTCTGTCCCTAAATGTGTCAGGTTAGTCGGAAAAGGCTTAATGACACTTCTGTTCTTGCGCAGCAGAGGCAGCCTTGATGTCTCTCTGTGCCTCAGGAACCCCAGAGAGATCAAAAACagtgttataaaataaagaGCTGGGGCTGTTTTGAGAAGAACCAAAGATAAGCGATTGGCGTGATGTGTTTGACTTACACCTGGCCTGTAGCTCTGCTGTAATTGAACACGATGCCTTGTGTTATGTGCCTAATGGGTTACATGTAAGGGAAGTGTCTGAAGTGTTTGAATACCATGCATATTTAGATCTGCAATGCTAAGTAACAGTAACAGCTAATACACAATAATAGGGCCACTAAAGGAACAATcagataatgtttttaaataattatgagtTTTAAATCTGATATTAATTTCTTCCAGACCGCTCActgtaatatttacatattgattGTCATTATTGGCTTTTTAAGTGTTGCCTTGACTCCAGAGCTGCTGTGGTCCCTTGTCCTCTGTCTGAATTGAGTTCATCTGAGAGTCACGCTCTGTGCTGCAGGGGAGTCTGACTGGGCAGCACTTGATTGGAAGTGTGGCACAGTAATGTGGAGTCTGCATATTCTGCGATCGACAAGAATTTAATCTGGAAACAGATCTGGGCCCGAGCCTTTCATCCCCGCACGGCTCCATGCCAATGTCAACGTTTCGTCTGATCGGAAATGCTAGGTTGGTGACATCACTTTGCTGGAAATGCTGCTGTGATATCTGTTTCCTAATGCTGTGCATCTGTATCTGGCAAGCTCGGAGAGAGTGGCTGCCAGGGAGCACAATCCCCATAGTGCTATGCTGATCTCTGACAGAGACGGGACACCAGCAGCCGTTGCATTCATGACTTGTATGGCAGATTTGGTCATCTGGCccttaattaattttaatcaagCATTTGGATACTAGTATATCCTGGTAAGGCCATGAAACTGAGTTGCACAGACTGTGGGCGTAATGACACAAGGTAGGGGTGTGGCATCCCACTGTGGGCGCCCACTTTCAGGGCTGCAGGGCGAGCTGATTTCTGTCCCCATAAATTCTTTTTACTGAATGTTACCTGGACGATAAGGCAAATCCCCAGTTCTCTCGTTCTGTGAAGGGTAGGTCCACAGCCCACAGCAGTCCAGCCAGGCATGACGGGAGCTGCCCGTCTCCGGTATAACACAAACTCCGGAGCAACAGAGGTCAGACAGTATGACTTgacctttaaaaatattgttgaCGTGGCCCGTCCTCGGCTTGTCTTCCTCTGTGCCTTGTTTGCTACGGCTAAGGTACCCCTGGTTTTGAGATCACGGCTGCATCGCTCTGGatgttttctcttctgtggcatcgagagggagagagggtttgGTTTTGGCAGTATTGCACCACTGGGTTTTGAGAGGGGGATTATGTGGTTCAACTcctgtattttgtctttttgttttgaactgtTGAGGTTACCAAACAACCATTGTGCAACCAACTGCCGTCTTCCTAAATGCcttggaattaaaaacaaacatccccTCACAGGGTTTACCTCTTGCACCATTTGGTGTGGTGTGCACAGTATCTAAACAAGCCTTTTTGCAGTGTAGGTTTTATACAGTATTAATCTTTCAGTATATtccttttgtatgttttttaatgttttatgaatgtatgcGTGATATGTGTTGGTAATACATGATTATCAAGgagtattttaacattttcaaaaatacaaaacccatGTGTCATCACATTCGGGTGGGGGgtagattgtattttttaatttaaacttaggtgtgtttaatttaacatttattatatatacatcattaagttaaaaatataaatgatttgtTACAAGCCATTTTAATACAGGTCATCTTTTTAAGTGCCTTAACCAGATCTGCTAATGACTGTATTCATGTTACATGTATTTCTTCCAAGTAGGCATTGCTTGCTAAAATCTAATTTgcaggaaaaaaagaacaaccCGAAAATACATTAACTTAGTGCTgatagttttgtgtttgttgcttgttacattgtatttataaagaCTATGgtattatgtttatatgtaacTTGTTATTATTGGCCTGCTGTGTTATTGATGTGCTTGGAAGAATAAGGATTCTGCCGACACACGTGGCTCTCAATGTTCCCATAATGCCACTTGTATGGCCACTTTCCTGTGGCCCTGGAGGAGTTTCCCCAGACACCCATGGGCTTTGGTGCATCTACATGCACATCGTTAATACTTCAGATTTATCTGTACCTTCTGGTTTACACCGAAGGTCACATTTGCAGGACTGCTTCATGTCAAAGACCTGTTGCAGCTCTTGTGAGGCCAAACGCACCATCACACATGATGTATGTTAATGCGTCAGATTGCGCTCTGTGAAAGCGTGGCCCAGGTGTTGCTTTTCGGAATGGGACAAGAGCTTCAAAACCGAGGCCTGTTGATGCTGACAACATCGTGTGCAAGAATTGGGACAAAGATGTGTCCTGTGTGATGAGCAGTCCTTATCTGAGTTCTGCGTATTGCTTGGACTGTAAATTGAGGAGATCGCATCAAGTTGTATGGTGTGTTCTTCTGTTCTTCCCTATGTGCAGTGTAGCCTGTGCGGAGGTACTGAATAGTATTAATGTCATTACTTTTCTAAAGGCCCAGCAGGAGGGAAAATTgccatatgtattttttaatttataaagcaTCTGTAACCATTTAATACCATGTATAACCATGCTAAATACCACGAAACTGCCATTTTCCTTGCCTGTACCACTATAACCTGTTATTGTTGAAATCCATATTAAACCTCAGCTATGGCAACAGCTGATGCTTTCTTTGGTTCATGTACTGCTATCCCTTACAGAACTGATTTGTACCAGTAAAGTGTTACATCAAGGTGTATGCTCTTGTGTTACCTCCCCAAAAgtcttatttttaatgcaatgccacccaccccccccaccccatcgtATATTAAAAGTAACCACAATCTCCTATATCTTCTCCCTTTATTACAATCTGATGTTTTTGACTTGTTCAGGGTAGAGCCAAACTGTCTGTTAAACTGGCAATATTATGTTGAACCACTCGGGGGCAGCAACAGAGATAAATGTGTTCTCCCGGCTGTGGTTCAGCATTGACGTGAACCTTAACGTGTTCTGCTAATTGTTGTCAGCATCTAATTAAATGCTTTGATAACAAACTCCCCTGTGCGATTCTGCACATGTGAGCCTGTGCTTACTTACAGCCGCTGCTCAAAGAAATGAAACGAATAGATTTTAGCCCCCAGTGGAGATTTCCTGGAAGTAATCCTACTTGTAAAACTCCTGTTAATGTAGTAAAATAAGTTTTCACTGTAGGCTGGTAGCCTaaatcacagtttatttttcaaaaacattcaatGCCACAATATTCTTAATGATAGGTGCATCAGATGTTCCAATTTTCTAACCAACTAATCTTGTATTGGcatgaatacaattaattgattaattgggtTGGGGGGTGGAAGCACCAAAATGCAGATAGAATGTGGTTGTGCTCTTTGAAAGACTGGGGGGCATCCGGAGCTCTCTGTCTGGGAGATGACTGACAGTGATGTCTAGCTCCTGGATGCAGGGAGAGTGGGAAGGGTGTTGCAGCACGATCATGTTTGACTTCTCTAAAGCTCTGAGTCATATTTCCTGTAACAAGGGGAAACAAGCAGATAAGTCGGTCAtttctggaaaagaaaaaagacaaagcaaaacCTCTTCAGAGGCTGGGTGGATTTTGAGCCGCAAGGTGGAGGCTTTGGAACAATTGAACTGATGCTAAAACGctttggaaagaaagaaaaagtgggTGGGggcatgcaaacaaaaaaaataaagacaagtgTCTGAAGCGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K17502 PPM1F, POPX2; protein phosphatase 1F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147288 lncRNA downstream 34523 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 34523 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 36422 15498662 ~ 15516282 (-) False AMCG00018617
TU147223 lncRNA downstream 338273 15214168 ~ 15214431 (-) True G117501
TU147187 lncRNA downstream 572320 14979041 ~ 14980384 (-) True G117472
TU147400 lncRNA upstream 452864 16022598 ~ 16025073 (-) True G117646
TU147479 lncRNA upstream 725096 16294830 ~ 16296445 (-) True G117710
TU147623 lncRNA upstream 1584268 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1896400 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1945123 17514857 ~ 17515120 (-) True G117856
AMCG00018614 mRNA downstream 16858 15526290 ~ 15535846 (-) True AMCG00018614
AMCG00018617 mRNA downstream 34389 15504451 ~ 15518315 (-) False AMCG00018617
AMCG00018612 mRNA downstream 123953 15421915 ~ 15428751 (-) True AMCG00018612
AMCG00018613 mRNA downstream 134242 15379743 ~ 15418462 (-) True AMCG00018613
AMCG00018610 mRNA downstream 260619 15237160 ~ 15292085 (-) True AMCG00018610
AMCG00018616 mRNA upstream 538 15570272 ~ 15586730 (-) True AMCG00018616
AMCG00018621 mRNA upstream 63712 15633446 ~ 15636944 (-) True AMCG00018621
AMCG00018622 mRNA upstream 78785 15648519 ~ 15657455 (-) True AMCG00018622
AMCG00018626 mRNA upstream 182602 15752336 ~ 15784546 (-) True AMCG00018626
AMCG00018627 mRNA upstream 225447 15795181 ~ 15825447 (-) True AMCG00018627
TU147284 other downstream 34523 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 36422 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 814392 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 1031829 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 2296935 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 1439164 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 1656356 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 1656356 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 2033622 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2896634 18466368 ~ 18474245 (-) True G118075

Expression Profile