RNA id: AMCG00018616


Basic Information

Item Value
RNA id AMCG00018616
length 3124
RNA type mRNA
GC content 0.54
exon number 18
gene id AMCG00018616
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15570272 ~ 15586730 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTCATGGCCGCCTCCAGCGTAGCTATAGCACGATTATTTCTCAGCTCTTGATTAAGGATGCCCCCCTTTTGAGCCACAGAAGCGAGAGAGAAAAGTAGTTTTAACACCAAACCTCTGCACAAAATAAGACCAGCAAGACAGCCGTCCAGTTTGCCATAATGAGGACTGTTTTGATGGTGGCCGAGAAGCCGTCTTTGGCTCAGTCCATCGCAAAGATACTCTCCAAAGGCAGCTGCTCCAGCCGCAAGGGACTAAACGGAGCATGCTCAGTCTACGAGTACACCGGAAGCTTCATGGGACAGTCTGCTCGATTCAAGATGACGTCGGTCTGCGGCCATGTGATGAGTCTAGACTTcatagggaAATATAACAACTGGGACAAGGTTGACCCTGCTGAACTATTCAGCAAAGCAcccacagaaaagaaagaagccaATCCGAAACTCAACATGGTCAAGTTCCTGCAGGTCGAAAGCAAAGGATGTGACGTGGTGGTCCTGTGGCTGGACTGTGACAAAGAAGGGGAAAACATCTGCTTTGAGGTCCTGGATGCCATCGAACCCTACATGAACAAGTCATACGGCAGCGAGAAGACGGTGTTCAGAGCCAAGTTCAGCTCCATCACCGACCAGGACATCTGTAATGCCATGAACCGCCTGGGGGAGCCCAACCGCAACGAGGCCCTGTCTGTGGACGCCCGGCAAGAACTGGACCTGCGCATCGGCTGTGCCTTCACCAGGTTTCAGACTAAATACTTCCAAGGCAAGTATGGCAATCTAGACTCCTCCCTGATATCCTTCGGCCCCTGTCAGACTCCCACGCTGGGATTCTGCGTGGAGCGCCACGACAAGATCCAGTCTTTTAAGTCGGAGCCCTACTGGGTGCTGCAGGCCAAGGTGTTCAAGGGCAAAGAGAGTCCCATCACGCTGGACTGGGACCGGGTGCGGGTCTTTGACAGGGAAGTTGCTCAGATGTTTCTCAATATTGCAAAGACCGCAAGAGAGACCAGGGTTGAATCCGTAAGCAAGAAGGAGAAGGCCAAGCAGAGGCCCCAGGCTCTGAACACAGTTGAAATGTTACGAGTCGCCAGCTCAGCCCTTGgaCTGGGGCCTCAGCACACCATGCAGATAGCAGAGCGTCTTTACACCCAGGGCTACATAAGCTACCCTCGTACGGAGACCACGCACTACCCCGAGAACTTCGACCTCAAAGGAACGCTGCGGATGCAAGCTAACAACCCTTTCTGGGCGGACACAGTGAAGGCTTTGCTCTCGGAGGGCTTGAATCACCCCAGGAAGGGCAGTGACGCTGGGGACCACCCCCCCATCACCCCCATGAGACCAGCCTCAGAGAATGAGCTAGGTACAGACGGCTGGCGTCTCTATGAGTACATCACCAGGCACTTCATTGCCACCGTCAGCCAAGACTGCAAATACCTCCAGACCACCATTTCTTTCAGCGTTGGCACAGAGACTTTCACATGCACCGGAAAGACTCTCATTTCTGCTGGCTTCACTGAGGTCATGCCTTGGCAGAGTATCCCCGACGAGGAGAGTCTTCCGTCCTGCGAGAAGGGAGATGTCTTCACGGTGGAAGAAGTCAAGATGCTCGAGAAACAGACCAACCCTCCGGACTACCTGACTGAGGCTGAGCTCATCTCACTGATGGAGAAACACGGAATAGGAACTGACGCCAGTATCCCTGTGCACATCAATAACATCTGCCAAAGGAATTACGTGACTGTGGAGAGTGGCCGCAGACTCAAACCCACCAACCTGGGCATTGTTCTAGTGCACGGCTATTACAAAACAGACGCGGAGCTGGTGCTGCCCACGATCCGCAGCGCTGTGGAGAAGCAGCTCAACCTGATTGCTCAGGGCAAGGCCAACTTTCAGCAGGTCCTGCAGCACACCCTGGACATCTTCAAGAGGAAGTTTCACTATTTTGTCGACTCCATCGCCAGCATGGACGAGCTGATGGAAGTTTCCTTCTCCCCCATCGCTGCCACAGGGAAGCCCCTGTCTCGCTGCGGAAAGTGCCGTCGCTTCATGAAATACATCCAGGCAAAGCCCAGTCGTCTGCACTGCTCTCACTGTGACGAGACCTACAGTCTGCCCCAGAATGGCGCCATCAAGCTGTACAAGGAGCTGCGCTGCCCCCTGGATGAGTTTGAGCTGGTGCTGTGGACATCGGGGTCCAGGGGCAAGAGCTACCCACTGTGCCCCTACTGCTTCAGCAACCCGCCGTTCAGGGACATGAAGAAAGgcatggGCTGCAACGAGTGCACCCACCCCTCCTGTCAGCACTCTCTGAACTCGCTGGGGATCGGCCAGTGTGTGGAGTGCGAGAACGGGGTGCTGGTGTTTGACCCCACCTCGGGGCCCAAGTGGAAGATGGCGTGCAACAAGTGCAACGTGGTCGTCCACTTCTTTGAGAACGCCCACAAGGTGCGGGTGTCTCCAGACAGCTGCGACTCCTGCGAGGCCTCCCTGGTCATTGTGGACTTCAACAAGGCACGCTCACCGCTACCCGGGGACCAGATCCAGCACACGGGCTGCTCCTTCTGCGACCCTGTCTTCCAGGACCTGGTGGAGCTCAAGCACGCCACCATGAGGCACCCCATGCACAGAGGCGGCCAGGCCAGGAGGCAAGGGGGGCGGGGCCGGGGGCGGGGTCGCAGACCGGGTGGCAGGGGCAACCCCAAGAAACCCAAAGACAAGATGGCGGCCCTAGCGGCCTACTTTGTGTAATGAAGTCAACTTGCTTAACGCAGGCTGTGGTTTACATGCCGGTGAATTCGTCTTGACAGCACTGTTGTGACCTATTTAACGGAGTTACGGtcacagttttaatttgttttgttttatgtttgaatacaaattacacacaaattGACTTGACAAAAAAGATCTAATGCAGAAAGTGTTAAATGAGTAAAGTATTAAGCAAAATGCTCTAAAATTGTAATCCAGGTGTACTACCTTAAAAGAAGTCATGACACTACCCCTAACATCAGGATGTCTCGCCAACATGTAAACACTGCCACAGTAAACGCACACCTTgggtgcatttgtgtttgttttttagttgtaaccatgaggaaaaaaaataaacacattttt

Function

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03165 TOP3; DNA topoisomerase III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147288 lncRNA downstream 52091 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 52091 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 53990 15498662 ~ 15516282 (-) False AMCG00018617
TU147223 lncRNA downstream 355841 15214168 ~ 15214431 (-) True G117501
TU147187 lncRNA downstream 589888 14979041 ~ 14980384 (-) True G117472
TU147400 lncRNA upstream 435868 16022598 ~ 16025073 (-) True G117646
TU147479 lncRNA upstream 708100 16294830 ~ 16296445 (-) True G117710
TU147623 lncRNA upstream 1567272 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1879404 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1928127 17514857 ~ 17515120 (-) True G117856
AMCG00018615 mRNA downstream 538 15552704 ~ 15569734 (-) True AMCG00018615
AMCG00018614 mRNA downstream 34426 15526290 ~ 15535846 (-) True AMCG00018614
AMCG00018617 mRNA downstream 51957 15504451 ~ 15518315 (-) False AMCG00018617
AMCG00018612 mRNA downstream 141521 15421915 ~ 15428751 (-) True AMCG00018612
AMCG00018613 mRNA downstream 151810 15379743 ~ 15418462 (-) True AMCG00018613
AMCG00018621 mRNA upstream 46716 15633446 ~ 15636944 (-) True AMCG00018621
AMCG00018622 mRNA upstream 61789 15648519 ~ 15657455 (-) True AMCG00018622
AMCG00018626 mRNA upstream 165606 15752336 ~ 15784546 (-) True AMCG00018626
AMCG00018627 mRNA upstream 208451 15795181 ~ 15825447 (-) True AMCG00018627
AMCG00018629 mRNA upstream 244452 15831182 ~ 15848951 (-) True AMCG00018629
TU147284 other downstream 52091 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 53990 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 831960 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 1049397 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 2314503 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 1422168 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 1639360 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 1639360 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 2016626 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2879638 18466368 ~ 18474245 (-) True G118075

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060065 True 4298 mRNA 0.44 17 NC_007116.7 13212960 ~ 13251907 (-)