RNA id: TU147284


Basic Information

Item Value
RNA id TU147284
length 4107
RNA type TUCP
GC content 0.41
exon number 5
gene id AMCG00018617
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15498662 ~ 15518315 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGATCGACcgacagaaacaaaacaacaggtcCGGCTGCGCCGCTGTAGTGCGGGACTGAGCTCGGCGCACAGGTACAGCTCGTAGATCCGCTCTGCTGCCGATTCAGCCGAGCAGCTAGGGAAAGGGGGAATAAAACATCTTTCATGACATATCTGGGGGAAGAGGAAAGCGGAGGGGATTTGCGTGGAGAAGAATATAAGCGTTCGTATCGGACTCTGCGTTGAATCTCTTGAGGGAGACTGGAGCGGTGGCGTCGCTGCCCACAAACCCAGAGGCAGTGTTACAGCGGGGCGCCGGGCGGTCATCGCCGTCCCACAGACACAGTCCGCCGCGGTGAGCGCAAGTCGATGGCCAGATTGAAGAGCTAGTTGCGCTGCAGTTTGCACACGCGAGGAGTGAGGACACGGGCGCCGGGACAGGAGGAATATGACCTACAATTATAGACACTAAACCGACCCCGCCGACTGCAAACGAGGCAACCCATGGTCGCGCCACAGCATACCTGCGGATGAAAACGACGGCAGACGGGGGGAGAGGACTTTCTCCACAGCGGGACGTGACGGAGATCGTTTGAGTGTGTCCATTTCTCTTGTGGTGTCTGTGTGGACCGTCCCACACACCCACTCCAGAACAACGACGGCTTTTGCTTgcatttttcagtgttttttctgtcaGCAAGTGCAGCAGAGTTGCAACTCTTCCAGCGCCAGCCCAGAGCTCAGTGAGGAGCAGCCAGACACTGAGATGGTGAAGATGACCAAGTCCAAGACTTTTCAGGCCTATCTGCCCAACTGTCACCGGACCTACAGCTGCATCCATTGTAGAGCTCATCTTGCCAACCATGACGAGCTCATTTCAAAGTCATTCCAGGGCAGCCAGGGCCGAGCCTACCTCTTCAACTCTGTTGTGAACGTGGGCTGTGGGCCGGCAGAGGAAAGAGTCCTCCTCACTGGTTTACACGCCGTCGCCGACATCTActgtgaaaactgtaaaaccACTTTAGGGTGGAAATATGAGCATGCCTTTGAGAGCAGTCAAAAGTACAAAGAAGGAAAATTCATTATCGAACTAGCGCACATGATCAAGGACAATGGCTGGGAGTGACCCTTGACCTCTGTGGGGATCATAGCTGTTTTATGACCTTTGCTCTGTCCAGGACTTTGCAGAGTGACCATGGGGATGGATGACATGTTTTCAGGTGTCTCCAAGCTCGTGGCAAAActttacaaacaaaagaaaaagacgaAACAAAACCGTGAATTAATTGATGTTGACTTGTGTTGCCCCTTGTGGGCCCTTTCATTGGGTATTCCCTGTTACAGATTTGGTGTATTCTATTCAGTGTGAACCACTatttcaattgaaaaaatattcagaagacttttttttcttttctccaaaCGCAAGAAACACCAACAAACTTGTGGTTTTAGTAGGATGGGTGTCAACATTTCCTGTGAGAGACTTTTACCCAATGGCAGACTGATGTTACTGGTTAGCATTTTTCTCCTTTGACTCCTGTCTGTATCTCTACCTGTTGCCGTGCATGCTTCTTTTGCAGTGTAATAATGGGGATATAGCTGAAGGCTGTGTAGAAGAGGTAGAGAGATGTACTATGTAGCAATGTATAGTGTTTTATAGATGGGGAGGGGGCTGCAGTGATatggtattttgtattaattatatcaCCTGTGTACcatctatttttaatacatatatattttttgttcttattatttcaCTGTGCAATCTGTGGGCACACCTGGTACTAAAATTCATGGCACCAAATACATTGGTCATCGACAGGAACAAAGGTGCTCGGGCAACATACAGCTGTATTGTTTTACATGGCATTTGTGGCTGGTCCCATTTTGCATCATGacttaaaacaaagtaaataaatgcatgcactgGACAGTAGGGGAAACGGGCAAAACTTATTCCAGGATAAAGCATTTTCCCTGCATTGGCGCATAAAAGAAATTAACGgataaatagatacattaatgaaataaatcGCATACTTGAATGCAGTAACGTTGTTTGCACTTTGCTGAGGTCTGGACGTCATGAGAGTTTAGAGGCAAATGtcgtctctgtctgtctgtgtcttttaATGCCTTTTCATTGACGATTGAAAGACTGTACAAAGGAAGTGAAGTAGGGGCTTGACTGGTTGGTAGGGAGATTGCCAATGATCGCGCATTCCTGTGCTCGTGAGGTAGTTCGAcaattgtatgcatttctttctctctaATAAGACACTAATCTTTTACCTATTCCCAGTTTGATTAAATccatgcattaaaacaaaaccagctcAATTTCCTCTTCTCCTGAATATTTACACTTTGCTGCTGCTACAAGTAAAACAGTGCTCAGCTCTGACTTTATTATTCTGCACTTTACTGTTGTTCGAGAGTATTTGAATGGTCATTTtctatgtaaatgtttgtttgttttttctctgtgtttttgccTCTAAATAACATGAATCTTGTGCCtcttcaaattatattttctctccTGTTGTGCAGTGCATAACTTGCACACCCCAGGGAAACGTTTAAAGCTCCGAGCAACACTTCCCTGAACATATTCAACAAATCTCTACTATTATCGGGCAAATGAAAGTTAATAATCCATTTGTTTCATTGTTCTATCAGCATTGCTTAAAATAGCCGTAAGTAGAGTGGTTATCTTGCTCATTTTGAATGGGGGAGTTTGATATCTTTTAAGATGGGGTGGGGtggagtgggtgggggggttgatttaatttgttttaaattgcatttaaacaaaacccGGATTCTAGAATGTAACTAAAGTCAATCTCtctcgggggtggggggttagtTAGTGTTTCTGTTCTTCTGGGGTGAATCGGAGACTATTTACAAGCGATTGTCGAGAGGTAAACGGGGTCAGTCTGGTTACATGGCCTTCATTCAACACGACGCATgacttaaataaacaaaaacacaaaaaaactaaaatagatctattaaaagaaaataacctacttgaaaaaatacagaTGGAAAAAACTTAGTaagtatataataaaaaaaacaaaacaaaaaaaaaaccttttcccTGTAACCGTTTTTGTACATAATAAGaacatatttaaagttttatacGTATTTCTACTGGGTCAGTTCCTATACTTTCCCAACTTGAAGCACTTTTGTTAACTGTACCTCTggctttcttgttgttttttttttttttcctttactttatcacacactgtatttttcttttgtagctGATAGTGAGTGCAAAGATTTATCTTTcttttgggggggagggagtgtttattttgtcattttgttctaTTCTTTCTTTCCAAGATCCTGATTGCAGTACAGTAGCTAGCTCTTTTATCTTGGATCACATGGACTTAAGGGCGAGCTGGTATCTCCCAGACATGTTGTTCTGGCAGTTCACAGGAGGGTTCTAGCGAATCATTCACGGAAATCATTTCCCTGTCTGTTTTCAAAACCTCTAGAAGCCTTTGTCATTGTAAAATCAATCGGACTAAATCCCAGGtctaaaaaaattatatatatatatatatttatgatgtaaaaaagatttagaaaataagTCTCCAGGGTGGCTGTttgctgaaagaaagaaaaaatatgtatctatcATTATTTATCTAACATGAGTGAGAAGAAACCAAAATTGACCATGTAGGCTAagtgtttttcaattttgtggCACTGTGcaatttttgtttgctttttaataaataaatataaataaatgggcagtgcctttttaaaagctataaaaaaaaaaaataccccccCACCATAAATCAATCACATTGGGTAATGTACAGCATGATCTTGATTCTGAGAAGGAATTTACTCTTCTTGTTCTATGATGACAATGGCTCAAGCTTTCAACCGTTAATATATAGGAAATGTTACTCTAAAGACCATTAGTACAAGGTATCTTAGGTATGCAAAGGAAAAGATTGTAAGTTTGAAGAGTGTTATTTTCATAGGactgttaaaatattataagGTCTAAAGCATGTTGTATTTATAACGGTTATATTGAGTCGTGCCTGATtttcttaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147223 lncRNA downstream 284231 15214168 ~ 15214431 (-) True G117501
TU147187 lncRNA downstream 518278 14979041 ~ 14980384 (-) True G117472
TU147151 lncRNA downstream 641067 14856420 ~ 14857595 (-) True G117441
TU147148 lncRNA downstream 662937 14833856 ~ 14835725 (-) True G117438
TU147142 lncRNA downstream 714349 14780287 ~ 14784313 (-) True G117432
TU147400 lncRNA upstream 504417 16022598 ~ 16025073 (-) True G117646
TU147479 lncRNA upstream 776649 16294830 ~ 16296445 (-) True G117710
TU147623 lncRNA upstream 1635821 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1947953 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1996676 17514857 ~ 17515120 (-) True G117856
AMCG00018612 mRNA downstream 69911 15421915 ~ 15428751 (-) True AMCG00018612
AMCG00018613 mRNA downstream 80200 15379743 ~ 15418462 (-) True AMCG00018613
AMCG00018610 mRNA downstream 206577 15237160 ~ 15292085 (-) True AMCG00018610
AMCG00018609 mRNA downstream 320992 15171962 ~ 15177670 (-) True AMCG00018609
AMCG00018604 mRNA downstream 540776 14957253 ~ 14957886 (-) True AMCG00018604
AMCG00018614 mRNA upstream 8109 15526290 ~ 15535846 (-) True AMCG00018614
AMCG00018615 mRNA upstream 34523 15552704 ~ 15569734 (-) True AMCG00018615
AMCG00018616 mRNA upstream 52091 15570272 ~ 15586730 (-) True AMCG00018616
AMCG00018621 mRNA upstream 115265 15633446 ~ 15636944 (-) True AMCG00018621
AMCG00018622 mRNA upstream 130338 15648519 ~ 15657455 (-) True AMCG00018622
TU147067 other downstream 760350 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 977787 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 2242893 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 3587326 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 4295774 11199578 ~ 11202888 (-) True G116428
TU147593 other upstream 1490717 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 1707909 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 1707909 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 2085175 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2948187 18466368 ~ 18474245 (-) True G118075

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060057 False 1731 mRNA 0.48 5 NC_007116.7 13037106 ~ 13086616 (-)
tiger barb (Puntius tetrazona) TU47988 False 2568 TUCP 0.47 5 NC_056703.1 1674490 ~ 1693974 (-)
mexican tetra (Astyanax mexicanus) TU446211 False 1822 TUCP 0.48 6 NW_019172901.1 389965 ~ 429483 (+)