RNA id: TU147286


Basic Information

Item Value
RNA id TU147286
length 1394
lncRNA type sense_over
GC content 0.48
exon number 2
gene id AMCG00018617
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15498662 ~ 15518315 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGATCGACcgacagaaacaaaacaacaggtcCGGCTGCGCCGCTGTAGTGCGGGACTGAGCTCGGCGCACAGGTACAGCTCGTAGATCCGCTCTGCTGCCGATTCAGCCGAGCAGCTAGGGAAAGGGGGAATAAAACATCTTTCATGACATATCTGGGGGAAGAGGAAAGCGGAGGGGATTTGCGTGGAGAAGAATATAAGCGTTCGTATCGGACTCTGCGTTGAATCTCTTGAGGGAGACTGGAGCGGTGGCGTCGCTGCCCACAAACCCAGAGGCAGTGTTACAGCGGGGCGCCGGGCGGTCATCGCCGTCCCACAGACACAGTCCGCCGCGGTGAGCGCAAGTCGATGGCCAGATTGAAGAGCTAGTTGCGCTGCAGTTTGCACACGCGAGGAGTGAGGACACGGGCGCCGGGACAGGAGGAATATGACCTACAATTATAGACACTAAACCGACCCCGCCGACTGCAAACGAGGCAACCCATGGTCGCGCCACAGCATACCTGCGGATGAAAACGACGGCAGACGGGGGGAGAGGACTTTCTCCACAGCGGGACGTGACGGAGATCGTTTGAGTCCTGGTGTTGTCGCAGATGGTTGAAATGGAGTTTGCACGGCGAGGGGCGCTTCGTTGTGTCGGCTGCTTCCAGAAATGTACCAACTGGGTCATCAGACGGCAGACGCAGAATGCAAACACATGACGTCACCAGCCTCTCGGCCAGGTGCCGCGCTCTGCTGCAGATCGAGACGCTCTTGATTTCAATGGTCGCTGCGTTTTGTCCCTCCAGTTGgagtctttttaaaatgtatatattttaaaggaaagcaaattaaaaatagaaccCATCCAAACCACGCAAAAATCATGTTTGATTGGGTTGCCACGGTGTTAGGCTTACATAACGCTTTCATGAATGGGAGCTTTGATAAAGAGGGAATCTCttctagatttgttttttaaatagatattcaaCATTATTAAGTGTATTACCTTTTTATAGTTCATTTGTGGCATtggttttatgctttttttagGTAGTGACGCATATAAAAATGAGTGGGGAAGAACATAGTTGCATGCAGTATTTAGAGGATGCAGCTTTTCAGTCATGCCTTTCAAAACAGATTACATTGCAACCGAATTGGTATATTGTCAAGACCAAGTTCAGACAAGCTGTCGAGGTGTTGCCACTCAAACACCCCGCAAGGCATGCATACGTGCTTCAAATGCTCCTGGACATTTTAATAGAAGTAACaaaccttttatttgtattttccaatTGAGATTTTTCTGGACTGCATACGTtgtatgatttgtttaaaatctgaTGCTGGGTTGCGAGATGTAAGTGATTATTATGATTGctttcacaattattatttttgttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147287 lncRNA downstream 272 15498662 ~ 15516282 (-) False AMCG00018617
TU147223 lncRNA downstream 302123 15214168 ~ 15214431 (-) True G117501
TU147187 lncRNA downstream 536170 14979041 ~ 14980384 (-) True G117472
TU147151 lncRNA downstream 658959 14856420 ~ 14857595 (-) True G117441
TU147148 lncRNA downstream 680829 14833856 ~ 14835725 (-) True G117438
TU147400 lncRNA upstream 504417 16022598 ~ 16025073 (-) True G117646
TU147479 lncRNA upstream 776649 16294830 ~ 16296445 (-) True G117710
TU147623 lncRNA upstream 1635821 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1947953 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1996676 17514857 ~ 17515120 (-) True G117856
AMCG00018612 mRNA downstream 87803 15421915 ~ 15428751 (-) True AMCG00018612
AMCG00018613 mRNA downstream 98092 15379743 ~ 15418462 (-) True AMCG00018613
AMCG00018610 mRNA downstream 224469 15237160 ~ 15292085 (-) True AMCG00018610
AMCG00018609 mRNA downstream 338884 15171962 ~ 15177670 (-) True AMCG00018609
AMCG00018604 mRNA downstream 558668 14957253 ~ 14957886 (-) True AMCG00018604
AMCG00018614 mRNA upstream 8109 15526290 ~ 15535846 (-) True AMCG00018614
AMCG00018615 mRNA upstream 34523 15552704 ~ 15569734 (-) True AMCG00018615
AMCG00018616 mRNA upstream 52091 15570272 ~ 15586730 (-) True AMCG00018616
AMCG00018621 mRNA upstream 115265 15633446 ~ 15636944 (-) True AMCG00018621
AMCG00018622 mRNA upstream 130338 15648519 ~ 15657455 (-) True AMCG00018622
TU147285 other downstream 272 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 778242 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 995679 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 2260785 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 3605218 11911014 ~ 11911336 (-) True G116577
TU147593 other upstream 1490717 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 1707909 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 1707909 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 2085175 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2948187 18466368 ~ 18474245 (-) True G118075

Expression Profile