RNA id: AMCG00018632


Basic Information

Item Value
RNA id AMCG00018632
length 1968
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00018632
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16115965 ~ 16143336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCAGAGCCCCAGTAACCAGACGTCTCTAGCCATGATGCAGGAGCCTCAGGAGCTGGTGGAGGAGACGGTAACCATCGAGGAGGACCCCGGGACACCCACCTCCCACGTCTCTGTGGTAACCTCGGAGGATGGAACCACTCGCCGGACAGAGACAAAGGTGACGAAGGTTGTTAAAACGATCACGCGCCGCACGTACCACCCTGTGACTGTCACCGAGACGCTGGTGGAGTCCAAGCCTGCCACTCCGATCGCGGAGATTGACCCTGTCACCAAGATGGTGAAAACCGTCACCACCAGGACGGTGCGCCAAGTTCCCCTGGGTCCAGATGGCCTGCCCATTCCCGACGGGTCCTCTCCGCTGGGCAGTTACACGGACTCCATCGACCGCCGGTACATGAAGAACGGGGACCGGTACATCACGCCCCAGGCCACCTCCACCCTCACCCGCTCCTTCAACAACTACAACGACTCGTACACCGAGAACCCCGAGGGTCAGTACCGCCACTACGGTCTCCACGACGGCTACACAGACATGAGTGACAACTATGGGAGCCTCTCCAGGGGTGTGAATTACCGCCCCCGATACGCCTACATGCCGCCCAACAACTACCGGCCGGAGAACAGCTACACCCTGCCCATCAGGAAGGATGACTATGGACACGTGGCCCAGCCCCAGGTGCCCATGGGCAGCAGCAATGTGGAGCTGAACCGCTCGCAGCCTGAGCGCTTCCACCCCGAGCCCTACGGCCTCGAGGATGACCGCCGCAGCCTGGggccagaggaggaggaggcctaCGAGCTGGAGCCTGACTACTCCACAGCCGGACGACGGACCCTTGCCGGCGCTGACAGGGGGAGGCAAATGAGGGAGCCAATCAGAGAGCCTGCCAGAGTCCGCGGCGGCTATGAGGACCCCATCGAGGCGGAGCTGATCGACGAGCGGCACCCCTACATCCCCAGCGTGTACACCGCGCCACTGGCCCAGCCGGAGAGGGGCAGCATGGCGAGCCTGGACCGCCTGGAGCGCATGGGCCGCCGGTCTCCCTCCATCGACAGCATCCGCAAGGACCCCCGCTGGCGGGACCCCGACCTGCCCGAGGTCATCGCCATGCTGGGCCACCCCATCGACCCCGTCAAGTCCAACGCCGCCGCCTATCTTCAGCACCTGTGCTATGAGAACGACAAGATCAAGAAGGATGTCCGCCACCTCAAGGGCATCCCCATCCTGGTGAGCCTCCTGGACCACCCCAAAGCTGAGGTGCACCGTAAGGCCTGCGGGGCCCTGCGCAACATCTCCTACGGCAAGGACAACGACAACAAGGTGGCCATCAAAAACTGTGACGGCATCCCCGCACTCATCCGCCTGCTGAGGAAGACCAATGACATGGAGGTCCGCGAGCTCATCACAGGTACACTGTGGAACCTGTCCTCCTATGAACCCCTGAAGATGGTCATAATTAACCACGGCCTGCAGACACTGACCAACGAGGTGATCATCCCCCACTCTGGGTGGGAACAAGAGCCCAACGAGGACTCAAAGCCCCGCGACGCCGAGTGGACCACAGTTTTCAAGAACACGTCCGGGTGTCTGAGGAATGTGAGCTCGGATGGAGCGGAGGCCCGTCGGAGGCTGAGGGAGTGCGAAGGCCTCGTGGATGCCCTCCTTCACGCGCTGCAGTCAGCTGTGGGCAAGAAGGATATGGACAACAAGTCGGTGGAgaactgtgtgtgtatcatgCGCAACCTGTCCTACCACGTCCACAAGGAAGTGCCGGGTGCAGAGAAGTTCCAGGACCCAACTGCCAACCAGGCCCCGGGGTCGGGAGGGCCacagaggaagaagaaagaTGATGCTGGTTGCTTTGGAGGCAAGAAAGCCAAAGGGAGGAAAAATGGAGAAAACGACAAAAACTATGACACTCTGGACTTGCCCAAGCGCACCGAGCCGACAAAAGGTAGCGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147400 lncRNA downstream 90892 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 597784 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 597784 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 599683 15498662 ~ 15516282 (-) False AMCG00018617
TU147223 lncRNA downstream 901534 15214168 ~ 15214431 (-) True G117501
TU147479 lncRNA upstream 151494 16294830 ~ 16296445 (-) True G117710
TU147623 lncRNA upstream 1010666 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1322798 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1371521 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 1441415 17584751 ~ 17585098 (-) True G117888
AMCG00018633 mRNA downstream 19943 16089985 ~ 16096022 (-) True AMCG00018633
AMCG00018634 mRNA downstream 34639 16060706 ~ 16081326 (-) True AMCG00018634
AMCG00018631 mRNA downstream 65076 16032700 ~ 16050889 (-) True AMCG00018631
AMCG00018628 mRNA downstream 221141 15863081 ~ 15894824 (-) True AMCG00018628
AMCG00018629 mRNA downstream 267014 15831182 ~ 15848951 (-) True AMCG00018629
AMCG00018640 mRNA upstream 146498 16289834 ~ 16293685 (-) True AMCG00018640
AMCG00018639 mRNA upstream 158578 16301914 ~ 16325216 (-) True AMCG00018639
AMCG00018642 mRNA upstream 235367 16378703 ~ 16391388 (-) True AMCG00018642
AMCG00018643 mRNA upstream 251620 16394956 ~ 16409595 (-) True AMCG00018643
AMCG00018644 mRNA upstream 295295 16438631 ~ 16462363 (-) True AMCG00018644
TU147284 other downstream 597784 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 599683 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 1377653 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 1595090 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 2860196 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 865562 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 1082754 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 1082754 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 1460020 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2323032 18466368 ~ 18474245 (-) True G118075

Expression Profile