RNA id: AMCG00018639


Basic Information

Item Value
RNA id AMCG00018639
length 7910
RNA type mRNA
GC content 0.46
exon number 12
gene id AMCG00018639
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16301914 ~ 16325216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTACCAACCAAGTATGCAGTGGTAGAACAGCTTGAGGAGATTAGCAAGTGCCCCTGGCTGACAGATGCAATCTCCCCAGCTCTCCCCTTGTACAATGGGATTGTGTTCCTGTTCGTGTTGGCCAACTTCAGCATGGCAACCTTCATGGACCCCGGAGTGTTCCCTCGAGCGGACGAGGATGAAGACAAGGACGATGACTTCCGGGCCCCGCTATACAAGAATGTGGACATCAAGGGCATCCAGGTGCGGATGAAGTGGTGCGCCACCTGCCAATTCTACCGCCCCCCGCGATGCTCTCACTGCAGCGTCTGCGACAACTGCGTGGAGGTGAGTGAGAGCGAGCAAGGgcAGCAGCTTCAGACCGGGCTGCAGAGAATCCAGGGAGACCTGTCAGTGACTACAGGACTCGAACTCCCTTTGTTTGTGCTTCCAAATGTGGGCAGATTGTTTGAAGAAATTGATAGCTTTCAGAGATGGATAGCTGGGTATATGGCTGTCATCCTGAAAATTACCATGTCCCCTTCAGATTCTGACTTTGACCATCACTGCCCCTGGGTGAACAACTGCATTGGCCGCAGAAACTACCGTTACTTCTTCCTGTTCCTGCTGTCACTCAGCACTCACATGGTGGGCGTCTTCTCCTGTGGCCTGCTGTTTATCATGCATCACCTGGAGAAGCTGGGCGCGCTGCACACAACAGTCACCCTGGTGGTGATGTGTGTGGCCGGCCTGTTCTTCATTCCAGTCATCGGGCTCACCGGCTTCCATATGGTCCTGGTTGCCCGAGGTCGGACGACAAACGAGCAGGTGACTGGAAAGTTCCGTGGAGGGGTCAATCCTTTCACTCGGGGGTGCTGTGGAAATGTGGAGCACGTGCTCTGCAGCCCTCTGGTTCCCAGGTATGTGTCCGACCCCAGGAAGAAGCCAGCAGTCTGTATCAAGCCCCCATTCCTGCGCCCTGACCCCTCAGACCGACAGATCACCGTGAAGATCAGCGACAATGGGATCCATGCCAACATACACAAAACCAAATCTAAAAGCAGCCTGGATGCTCTAGATGATGAACATTTGGACAGCCAGCCACCACTCCCCCCCAAGGCTGACCCCAGCAAGTACTCCGAATTGAAGAGCCAGCTGACGTCCAGTGAAGAGAGTTCCCTGTACAGCAAGCCTTTGAACCCATCCACTCCGGCCATGTTCAAATACAGACCCTCCTTCAGCACCATCCCCAAAGTGCACTACCACACTGCGGGGGAGAAGATTGTGATGCAGGACGAGCGCAAAACTGCTGCGATCCTGGAGGAGGGCGGTCGGGGCCATGACTATCGCTCAGAGCCCAACCTGGACCTGCCCGACTACAGGAACCCCTCCCTCCACCGGACCTTCCAGTCCTCCCCCCTGCAGCTGGACTCCTTCACCATCAACTCGCGCTCGCTCAGCCTGAAGCACGCGCACCACCGGAACGGGGACAAGGTGCCCCTGCACCCCTTGAAATCGGAAGGGACCACCTCCACCCCGTACAAGAGCGCCTTCGCCGCCAACACGTTGTCCAACCGCAACGGCAGCCTCTCCTACGACAGCCTGCTGAACCCCAGCATCTCCCCCTCGGCCGGCGAGTGCCTGGCCCACCCTGGGATGCCTTCAGTGGGGTACCACTCGCCCTACCTGTCTGCTAAGATGTGTCACGTGCGGGGCTCTGAACTGCAGCGCCAACTGCCACCCACCTACAGCCCCATCCTGGGCGGCGGCAGTGGAAGGGGCGGTGGGGGAGGCGGTGGCGGTGGCAGTGGGGCTGGGAGCAGGCACTCGCCACACCCACGGGACCCCTCGCCAGTGCGCTATGACAACCTCTCCAAAACCATCATGGCGTCCATCCAAGAGCGgaaggagatggaggagagggagaagctGCTCCACCTCCGTGCCCAGGTCCAGGCCCAGGCCCAAGCGCAGGCGGAGGCGGCCTACGCAGTGGACTCGGGGGTGTACGACACCCCCAGCGGGTACAGCATGCAGCAAGGCGTCTGCTACCCAGACGAGCCCCGCGCCCTGCCGTCGTCCTCCGCCTACAGTTCCCGGGACAACCTGATGGGCGGTGCTTTCACGGGCCGGACGCCCCTGCTGCGTTCCTCTGCCTCCTCGCTCAGTAGCACCCCCCTCTCACGGGTGCCCAGGACTTCCACCACATCCCTGCACGCCGACATGGCCAACAACAACATGCAGGGCAGGCCCAGTGAGGCGCCCTACAGGTCCCCAGCCCACCAGGTGCCCCACTCCCCCTCCGCTCTCCCCCGCTCCCCTTCCTATGGCCTCCAGAAACCCCTGTCCTTCATCAACGCGTTGGAAATGACAGACTCGCCACCTCTGGGAGGCCCAAGgGAGGATGGCCATATGAGAACATCCCACAGTAAAATAAACGGGCAGCCCAAAGGCCTGACCAGGGCCGACTGCCGCTTAGGGTCTGCCTCCAGTTCCCAAGGCACCCCCGTGAGCCCCAACCGCCATACGAACGTTAAAAAGGTGTCGGGTGTGGGCGGGACCACCTACGAGATCTCGGTGTGACTGGGCGTCGCACAAAGCCGGAGGCACTGCCAATGGGATCCACTGCAGCGCAACAGAGGAAGGTTCTTGACCAATAGGCTGCAGCCTTATTCCCCAGGGAATGACGGTCCAGCCAATCAGACGATCCCTCTTTACCAGACTCACGGCAGTCCCTGTGAGCGGTGTACTGGAgagtacattttgtttgtgtttgtatttgtattgtttttattttggtcggTCTCTCggagagggggggggtgaaAAAGGATTTACAGAAATCTAAAGGAATTTGTTCCCTGTTGTGTGTACACCGCTGGGGGAGagtttgattgattttgttttttccttcatttgttttttattggtttattttttttgaggCACTGAAAGCAGTTTTCAGATATGTATATGACATGTTTTAGACGAGGCTTTTGAGATTCACGTCCACACACTGTTTCTCCTTTTCAGTCACTCCACTCTGAGGGGGCACAGCAATGAAAAGCAGTCATTTCAACCAGTGACTCAAAGACCATCCGATGGTCCAGTGTGGCCTGGGTCTCAGTGAACACGTCACATCGCACACCTTGGATGTCTGTGGGCACCAAGGGCAGGACGGTCTTTCTGTCACCCATCAATATTGTGTTCTGCAGTATTAACTTTTTATTGAAAAGCTGGGTGAATGATTTAATGCAGTGATTTGTAAGCTGCGGTCGTTGCCATTTGTTCCTTGTTTCTctttgtaaagatttttttgcttaatttgatTCTCTGTGTAGCTACACCGTCTATACATGgttaaaataacagaataataacCCACTtgcttaataaatatttatgaactgAGAAGTAGAGATCTTTTCTGCTGGCCAGAGCTGTTACGCCAGTGGAGTTGTAAGTAGTATCTGGACAGTGTGTTCTGATTTGGGCAGATACCATtttaacgtgtgtgtgtgtgtgtgtctgtgtctgtctgtgatcTAGCACTGGACTATTCATACACTGTCCGTCTGCCATACAcaacccaacaaaacaaaagtaggaaaatgtttcaaaaacTGTTTGTCTCTGCAGATTGGACAAAAAGTTCAGGtaactgtaaataaaagtaaaacatttaaaatgcaaagtttTAAATCACCAGAGTtttcttggtttttgttttgttataacacaaatgtttgatataaatcttgttttttcttttctttttatggaAGTATATTTAAATGCCTTTGGTTCTTGAATGTTTCCGCCACCtggaatcaattaaaataatgattgattATCCCTTGATTTGCAAGGGAAGCTAAATGATCATTGGGGCGATGCTAGTTTGTGGTTCCAATGTTTTGCATTGCACATAAGTCGGGACTGTACAGCCACTTTTGGAAAGCTCGATATTTGTTGTTACTGCATTAAATATTCTAGTGCAGCAAGAAAAGACATTTTCTTGAGGTTAAGAAGATTCCTACTGGACACGTCTATACTGTCGTCATTTCGATCCTAAATGTATGTGCTTATTATTGTGTGGTTTCTTTGTCCTCTAACAAAAGTAACGTTAAATAAGAAAGCTGAGTTGGTTGTATGACGGAGCAACATTCAGGGCTGTTGTCTGGCACAGCACGAATACGTACACCCTGCCTAAACATGAAGTTTAATGGaacgtttgtttttttttaatttcatacgAAGGTACATcagtttttagtttgtattcCTTTTATTAAAATCTAGGTTTGctttagttaaaaataaatagtgcatCTCAGTGGAGTTAAGTCTGTATGTTAGGGGTCTGGTCTGGGGGCTGTAGTTCAGTGTGGCTTATCGTTCTCTGTAATTCACCAACACCTTAAAACAGTCAGAAGTAATTAGTTGGATAATGTACTCTCTAGTGCTGGTGGGAGGAAAGGCAGAAGACCTGGCTGCCTTCAGGGACCAGCACTGCACCCCCTTGTTTGGTCCTGAAATCTGAACAAGGTTATCGTGGACTCCAAAGAAAGccaatttacacacacaccacccaaCTGCTCAGTTTCCATTCAGCGTTTttaatgtagtgtgtgtgtaattgttatttattgcagACTTATTTTTGCAGGTATGACAGTTTTgaagattctttttttttttttttttaggaaggACTGGTCTGGAAAATTGTgggaatttatatatatatatatatacatacatacacacacacacacgttcagAATAGGTCTCATATCCCAGTAGTTGCCAAGAACAGTCCTGCGTAGCTTCTGATCTCCGTTGCCCTCTCTTCACGGTGCGCTGTCTGGTATAGCTACCACTTCCCAAAGGCACTTGACTGTTTCCCCCATTTTAATTATGATCTGCATTAATGCATACTTAATGAATGTGCACAGAGTTACTGGTGCTGCACCGAATAGGTTTCACTCTAAAGCCTCTGACCGCAGAGGCAACTCGCTCGCTCTTCCCATGCTGCGCTCTGTCTGTGGGGCGTCCCCATGAGAGCTGGGACTGTGACCTGTTACTACTGGATGTGTGAGTGATGGATCAGGCTTTAAGATGTAATTGAAACTGAAGAACTACTTGAAAACAATTCACTAcgaacaaaatgttaattttcccAAGATTAACCCAACGGCTTTTTAATGCAGGACGTTCAGCAGGGCATTCCACTTACGCAAGGGGTCTTATGCACACTTTAGATGTTCATTACTGGCAATACTTTTGTGCTTTTGAAGGAACCAGTTATAACTCTCACTGGTCTCTCAATCCAGCAGTGTTTTACGGCGCCACGAGTCAAATTTTCATCTATCTTTTGTTCGCCACCTTTTGTCTCGCTGCGGTTATGGTGTGCAGGGGTTGAGGGAGTGGAAGATGAACGGAGCTCTTTGTTACACCAACTGCTGTAACATCTACTCTCCTGAGCATCAGTATGGTTTTAATTGAAGACCCTGAGTGAGCGAGCAGGGGAATCTAATGACAGCCCGGCTGTGGAGTGTTGTAGCCCTCCGTGTAACgatcacttatttattgtaCACTTGTAAAGTATATGTTgctaaattcatttttaatgatgcATTTCCGGCAGGGTAGATTTACAGCTCCGATGACAGACGCCCGCAGCGGTGAGCGAATGAGGACCATGAGTAGAAACATCCAAGTGCTTTATTTGAAATACCTACCttgaatgaatatataatggatattttattctttgtccCACTCTGCTATATTGTCCTCTGTCCTCTAGCATTTTTCCCCTCCATTCTTGAACAGAAGGTGGTGGGAACAGAAGGCATGAATGTTTAAGAAACTGAATACCACAGTTtgggtttattttcctttttaggTATTCATAATTTTCCAtgatgcattatatataatgcGTGTACATGTGTCAGTCAGGGTTCATACTCGCTGCCATTTTGTCAGCCTGTTGTTGCAAAATCATCTTACAGAACCGGATATCTTTCACCAGAGTGTTCAACGCGAGGAACCAAAGCTGTCGCTTATCAACCACTTGCTGCCAAGGAGCTGATACGTTTCAGTCACAAGCTTTGATTAATTTCTGTGCCATATCGTTGGTATTCTAGGGATGGCCTAAGTCAACCTCTGGAAAACAACTTTTGTGCTTGGTAGTTTGTATAATAGAGCAAAACGGAAATCATGCTTTGTCAATGAGTCAGTTAGTGCTCCTGATATACCCATTGATCTAATTGATCTAACCGTGTATGAGGGAGTGTTTGGCAGTTACACAATCATTCTTACTCTAGTATTTGCTTTCCCATGGACCAAGTTTGTTACATTTCTTGTATTTCAGATGTTTACAAAACTGAGACATTAAGATTTCCTATTTTTCGATGTCTAAAGTATATTAAACCATTTCCACCCTTTTATTCTTCCCCGTccaattacaacaaaaaaaataaaaaaaaaataataagtccCTATTATTGAAGCAGACGTCTGCTGCAAATTTTTGGATACTGCAATGTGGTTTTGCTTAATAAATCAGGACAGGTTATATGTATTACTTCTACCAGCGGACAGCACTATTTTATGTGTGAGAATTGCAGAGCAGGGTGACATCCTGCTGTAGTCCAGAACCGAGTGCCTGACTTAATAATGGCAGCAGGAATACCAGGTTAGCTGCCCTTACGATGAGAGttgggaggttttttttttctcccccttttaAGTCTGTTTTCCaggccaaataaaataaaaatcactagCACATAAGGCTAGGGCTTGAGGGTCACAGTGCAGGGAGTATCAGTGGCTTTCTGGAGCTACCCTGTTGGTGCACATAAGTTCAGGATCAGGGGCAAAGGACAGACAGGTTCCTCAGTGCACGGAAAATAACAATCCTGTACATAATTGTTAACTTTTGACATTTAAACAGTAAAGTGCTACTTGACCAAAAAGGTGCTAATATAAATATAGCCACGCACACAAATATTTTGGAGGGAAAGTAGGTCTGCACTAAACATGATATGGATTTTGATAATGCATAGGTTTACATATCAATAGATTAACTGTGGTCCGGACCTGGCACTTTTAacagcagggaaaaaaaagaccacaAGATCCGCAGAGGACCAACCTTAGATTTGTCTGTCACGGGGCCGGGTTTAATTTGCTGCGTTTTTCATAGAATGTATCCTGAAGCAGCCTCCCACTTTAACCCAGCGGATGGTGTACGCAGCACAAGAACCGcttccattttaaatacaggTGTATTTATGAGCAAGATTGAATCATTCTTGGATCGAACTTTAATCTGAACGTGTTtttgggagagagaaaaaaaggcaaGTTATTTTGCGGTTTGTGTGTGAGGGTGCTTGTATAGGGAGTATGTAAATACAGACTGCATGGGTTTACTGTAaaagacatttatatatataatttcttttCACCTGTATGTAAGCACtgaggaagattttttttttaattttaattcaaattcttTCACGATATTAagtccatttacattttctttcatacaCTTATGAATGTCATGTTTCCTGTACCTTTTCCTTTATAGAACTGTAAAGCATAAACATTTGACACTTTTTCAGCTTATGTCATTATTTTGTCCAATATATCATAAAAAGATTTTTGGTTGAGCGAATCGTGTTGGgactttttttcctccccactTGCGTCCTGCATTTAACTACGTTTGCATCTGCTCATTAGGAGCAAATTACGGTGTTTATACCATTTCCCCTAATTGGATGATATGGGCCTGTCTGTAGTAtccaagaaaatacatattaaatacatctgaGAGAAATAAACTGCAGGCAAAACTGttctaaaatacaattaaatatgtaaagatCCATATTCTATTT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K20030 ZDHHC5_8; palmitoyltransferase ZDHHC5/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147479 lncRNA downstream 5469 16294830 ~ 16296445 (-) True G117710
TU147400 lncRNA downstream 276841 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 783733 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 783733 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 785632 15498662 ~ 15516282 (-) False AMCG00018617
TU147623 lncRNA upstream 828786 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1140918 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1189641 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 1259535 17584751 ~ 17585098 (-) True G117888
TU147764 lncRNA upstream 1409460 17734676 ~ 17736324 (-) True G117916
AMCG00018640 mRNA downstream 8229 16289834 ~ 16293685 (-) True AMCG00018640
AMCG00018632 mRNA downstream 158578 16115965 ~ 16143336 (-) True AMCG00018632
AMCG00018633 mRNA downstream 205892 16089985 ~ 16096022 (-) True AMCG00018633
AMCG00018634 mRNA downstream 220588 16060706 ~ 16081326 (-) True AMCG00018634
AMCG00018631 mRNA downstream 251025 16032700 ~ 16050889 (-) True AMCG00018631
AMCG00018642 mRNA upstream 53487 16378703 ~ 16391388 (-) True AMCG00018642
AMCG00018643 mRNA upstream 69740 16394956 ~ 16409595 (-) True AMCG00018643
AMCG00018644 mRNA upstream 113415 16438631 ~ 16462363 (-) True AMCG00018644
AMCG00018645 mRNA upstream 139525 16464741 ~ 16485588 (-) True AMCG00018645
AMCG00018646 mRNA upstream 422437 16747653 ~ 16747961 (-) True AMCG00018646
TU147284 other downstream 783733 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 785632 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 1563602 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 1781039 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 3046145 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 683682 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 900874 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 900874 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 1278140 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2141152 18466368 ~ 18474245 (-) True G118075

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000936 False 2526 mRNA 0.56 12 NC_007112.7 44540413 ~ 44565055 (+)
grasscarp (Ctenopharyngodon idella) CI01000071_02000540_02048898.mRNA False 2943 mRNA 0.47 10 CI01000071 2000385 ~ 2049583 (+)