RNA id: AMCG00018640


Basic Information

Item Value
RNA id AMCG00018640
length 1887
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00018640
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16289834 ~ 16293685 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGAGGTTGTGGAAGGTGTCGTGGCAGGAGCACCAGACCTGGGTGAGGAGAAGGAGGCCGTACCAGAGGAGGCGGTGGAGGAGGGGGCGGATGTGGACCGTGGAGATTCAGGAGAGGAGCCTCAGCCAGACGGGAAAGAACCAGATGGGGCCGACTCCAGCGTCTACCGCTACATCAAGGATGACCTCTTCACCTCTGAGATCTTCAAGGTGGAGATCCAACACCTGCCCAAGTTCACCGGCTTCAACGACCTGAAGAAGTTCCTGGCCAAGCATGGGGTCAACCCTCACAAGATCAAGCTGTTTGGCCGGCAGACCTTCGCCTTTGTCACTTTCAAGAGCCTGGAGGAGCGGGACAAGGCGATGAAGGCCGTCCACGGCATGCAGTGGAAGGGCAACGTCCTGAGCGTGCGGCTGGCCAAGCCCAAAGCCGACCCCATCCAGAAGAAGAGGAAGCAGCAGGAAGAGGCCGGGGCGGGGCAGCCAGCCTCCAAACGCTCGGCGGCCTCGGAGGGGctggaggaggatgaggagccGCTGAGTAAGCAGCTGGCGGACGTGGTGACGCCTCTCTGGAACGTCCCCTATGAAGAGCAGCTGAGGAGGAAGGAGCAGGAAGTTGAAGGGGTCTTGCAAAGACTAGCGAAggAAATAggtaacaacaacaaagccATGTTGCCCTGGCTTTTTGTGCAGAAGGAGAAGTATAACAGAATGTGCTGTCCCCTAGAAGCTATCAGACCATCTCCCCTGCAGACTGAATATCGAAACAAATGCGAGTTCCTTGTCGGGAGGGGAGCAAAGGGGGAGGATAAGACGGTGGGCTTCCGACTGGGCAAGTACAAGGGGGGCTCCTGCGCTGTGGTGGAGCCGTCAGATACCGTCCACGTCCCCGTCCACACCAAGAGGGTGGTCAAGGCCTTCCAGGAGTACATCAGGACAACTCCCTACACAGTGTACTGTCCCGAGACGTACGAGGGCCACTGGAAGCAGCTGACCGTGCGCACGAGCAGGGCTGGTGAGATCATGGCGATGGTGTACTTCAACCCACAGAAACTACAAGACCCAGAGCTGGAAAAGCTGAAGAGCTCTCTGGGCCAGTATTTCTTTGAGGGAGCTGGTAAAGAAAGCAAGGTGACCTCTCTGTATTTCGTGAGAGAGGGGCAGCGGAAGTCTCCTAACCTTGAGGACCTGCCCTCAGAGCATGTGGCTGGAGAGAAGTGGATCCACGAAGAGATGCTAGGACTCAAATTCCAGATCTCGCCTCACTCGTTCTTCCAGGTGAACACGCCGGCTGCCGAGGTGCTGTACTCGGCTGTAGGGGAATGGGCGCAGCTGGGCCAGGACAGCACGGTTCTGGACGTGTGCTGTGGGACAGGAACCATCGGGATGTCCCTGGCCAAGAGTGTGAAGAAGGTGATTGGAATCGAGCTTTGTCAGGAAGCAGTAGAGGATGCCAAAGTGAACGCCCGGATCAATGGTCTGAGCAATATCGAGTTCCGCTGTGGGAAGGCAGAAGACATCTTCCCCTCAGTGCTGAACTCCATCGTGTCCCGAAACGTAACTGCGATTGTTGACCCTCCGAGAGCAGGACTGCATTCCAAAGTCATTTTGGCCATCAGAAGAGCAGAACACCTGAAAAGGCTGGTTTATGTGGCCTGCAATGCTAAAGCTGCCATGAACAACTTTACAGATCTCTGCAGGGCCCCTTCAAACCGGGTCAAAGGCGCCCCCTTCAGGCCGGTCCGAGCCATGGCAGTGGACCTGTTCCCTCAGACCATGCACTGTGAGCTGCTTATTCTGTTCGAGAGGGTGGACTACAGCTCCAGTGCTGACCCCCCAAAACCTGCGGAGCCATCCAAACCAGAACCTTCGGCAGACTGA

Function

GO: NA

KEGG:

id description
K15332 TRMT2A; tRNA (uracil-5-)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147400 lncRNA downstream 264761 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 771653 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 771653 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 773552 15498662 ~ 15516282 (-) False AMCG00018617
TU147223 lncRNA downstream 1075403 15214168 ~ 15214431 (-) True G117501
TU147479 lncRNA upstream 1145 16294830 ~ 16296445 (-) True G117710
TU147623 lncRNA upstream 860317 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1172449 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1221172 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 1291066 17584751 ~ 17585098 (-) True G117888
AMCG00018632 mRNA downstream 146498 16115965 ~ 16143336 (-) True AMCG00018632
AMCG00018633 mRNA downstream 193812 16089985 ~ 16096022 (-) True AMCG00018633
AMCG00018634 mRNA downstream 208508 16060706 ~ 16081326 (-) True AMCG00018634
AMCG00018631 mRNA downstream 238945 16032700 ~ 16050889 (-) True AMCG00018631
AMCG00018628 mRNA downstream 395010 15863081 ~ 15894824 (-) True AMCG00018628
AMCG00018639 mRNA upstream 8229 16301914 ~ 16325216 (-) True AMCG00018639
AMCG00018642 mRNA upstream 85018 16378703 ~ 16391388 (-) True AMCG00018642
AMCG00018643 mRNA upstream 101271 16394956 ~ 16409595 (-) True AMCG00018643
AMCG00018644 mRNA upstream 144946 16438631 ~ 16462363 (-) True AMCG00018644
AMCG00018645 mRNA upstream 171056 16464741 ~ 16485588 (-) True AMCG00018645
TU147284 other downstream 771653 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 773552 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 1551522 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 1768959 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 3034065 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 715213 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 932405 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 932405 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 1309671 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2172683 18466368 ~ 18474245 (-) True G118075

Expression Profile