RNA id: AMCG00018642


Basic Information

Item Value
RNA id AMCG00018642
length 7563
RNA type mRNA
GC content 0.43
exon number 12
gene id AMCG00018642
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16378703 ~ 16391388 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAACTCTAAGCCCTTCTGCCTAGTTTCATGCCAAGTCCATTGTCTGCTGCGAAAGGATCAAAACTCATTATaatctttcttcttcttattatttaattgttctgCACAGGTAGTTAAAAAATGGAGGCGATTCTTAGCAGGCTGAAGGGGCTGAGTGGAGACGAGCTCCGGGAGGAGATCATCGGCGCTGGGCTGAAGTGTGGGCCCATCACTGCCACCACCAGGGCGATTTTCGAGAGGAAGCTAGCCCGCGCCGTCCTGGAAAGCCAGGGGGGGGAGAACAATAGTGAGAACGAGAACAAGAGTGAGACCGGGAGCAGCCACGGAGCTTCCATCATAGATGGCCGTCCTGCCGGTGGGGGGGAGGGTGCAACCTCTGGGAGCAACCATGCCAAACTGGGGGAGAGTGCCACGCCCACTGACTCCCCAGACAAACTGCCCTCGGCCAGTGAGGAGGGGGATTTTGGGTACGGCATGGGGCTGAACCCCCCCGAGGAAGAAGCCTTGTCACAGAAGACAGGCTCTCAGTGCAGCGTCAGTGTGAGTGAGGCCACCACACCAACCAGCACACAGACCCCTTCAAAAGGGCCCCAGGCCTCCCCACCCTTGTACTATGGAGTTTGCCCAGTGTGGGAGGATGTGTTGGCCAGAAACGACAGGGTCCATGTCTATGTAGATAAGAAGGAAGCTCTGCAGGCAGTGAAGATGATGAAAGGGGCCAGATTTAAAGCTTTCTCCAACCGAGAAGACGCTGAAAAATTTGCAAAAGGGATCTGCGATTACTACCCTTCACCCAGCAAGGCTGTGCTGTGCGTCTCCCCAGGGAAGTTGGGCATGGTGTTCAGTAAGGACGCTTCTTCCCTGGAGGCCGAGACCATAAACCGAGAGCGAGCGAACAGCTTTAAGAGCCCACGGACCCAGGACCTGACGGCCAAGCTGAGGAAGGCGGTGGAGAAAGGGGATGAGGTGGCATTCTCGGAGCTCGTGTGGAGCAATCCCCGTTACCTTATCGGCTGTGGGGACAACCCCACCGTGGTGCAGGAAGGATGCCGCTATAATGTCATGCATGTTGCTGCCAAGGAGAACCAGCCTGGTATTGCCCAGCTCCTCCTGGACACGCTGGAGAACCCAGAGTTTATGCGTCTCATGTATCCTGATGATCAGGAAATGATGCTGCAGAAACGCATTCGGTACATTGTGGACCTGTACCTCAACACACCAGATAAAGCAGGCTTTGAAACTCCTCTCCATTTTGCCTGCAAGTTTGGATGCCCAGAGGTAGTGAATGTGCTTTGTTCTCACCCGGATACCGACAAAAACTGCAAGAACAAGTACAACCAGAAGCCTGCTGATGTcatttgtgaaagaaagaataaaaccgCAGATGTGAAACAGAAGATCAGAGACTATTTGGAAGATCGCTACTACATACCCTTATTGAGGGCCGCAGACAATTCTTCCCAGCCTGTTATTGGTACTCCGTGGTCACCTGATCCTTCAGAGACGCTTCCTCATTTGCATGTTCAGAGATTCACAGGAAGTCCGAAGGATCCTATAATGGCAGTGAGGGCTTTTGCTGGTCCACTCAGCCCATCAAAGGCTGATGAGTTTCGCAAGGTGTGGAAGACTCCCCCTCGAGAGAGGGCTGGATACTTCCACCACATTCTGAAATCTGATCCGGACAGAGGTGTGGAGCGGGTCGGGAGGGATTTGGCTCACGAGATGGGTCACCCCTGGGCTGAATACTGGGAGTTCCTCGGCTGCTTCATAGATTTGTGCTCTGCAGAAGGCCTACGGAAATTGGAAGAATATCTAAACAAGAAGGATTTCAGCGAGAGGGTCCAAGAGGAGGCAGGGGAAAACGAAACCAGCAATAGGTTCAAAACTCCATCCCCAGgCAAACCTAAAAAATTCTGCAACTCTATCTCGGTTGGTGCTTTCCTCGACGAAGACGATGACATAAGTTTGGAAGAAATCAAGAACCGTCAGAATGCCGCCCTGACCAACATCACGGCGGTGTGTGCGAAGGAGAGCCTAAAGGGAGCCGTGGGGGGCTTGGAGTGCCACATCCTCCCCATAAAACACAGCGCGGACCTCATAGAGACGGCAGCCGAACAGGACCGGCTGCTGCCAGAGAAGGGGCTCAGCTCGACAAACAAGAACGGCTTCTGCTCCCCTGTGAGCGACGATGCAACGCAGAATGGAGAGAGACCGACGAGGAGCTCCTCTGGCAGCCTGCTGTCTCCCATCTCCAACCTCATGGTCGAGTTCGAGAGGATGACGCTGCAGAACAGGGAGGAAAACGAGGCGCACCGGCCAGAGAGGAGGTCGGTTGGTGGGCTGAGGAGTTGGGAAGGGAGGGACTTCTGCGCGGCGGAGGTGGTCGCCGGGGTGGGACGCATCGCGCTCTCCACCAAAGAGGATCCCGTGTGCGGTAAAGGGAGCTCTGATCTGAAGGACAACAGTTTCTGGAAAACGTGTGAGAGCAGCGAAGTGGACGGGGATGCAGAGGACAGGTCCAGCACAAGCTCGGACGAGTGGTTCACGCCGGAGGAAAGCCTGGAGGCCCTGAGCCAGAGGACAGGGGGCACAGCAGCCTCTGAGCGTGGCAGCTGTGCCCGATCTCAGTCATGGGACCATGGGGGGAGAGATTTAAACAGCTCAGGTTCGAGCAGCTCCTCTTACAAATCTATTGAGAATACTCAAGAAGACTTTATATTAAGGACTCCACCCAACGTTAGGAAAGGCCTTTTCATCGATGGGGAGTCCCCATCAAAGCTGGACAGAGAGGTTCTATTAGCAATAGAAAGCCTTGAGGTCGACCTACAGAAATATCCCAGCATTCAGAAGTGGAAGAGCTCAGTCCagactttttcttcttctgagaTGGAAAGCTGGCCTAGCCCTGCTGTAGCAAAAGGACGCCCCAAGATCCAGCTGTACACTCCAGGCTCCCCCAGCTGCAGCATGCTCTCCACCCCAGGTCGGTACAGCCCTGCCCGGAGCACCAGCTCCCCAGACTTCAGCAGTCCCGGCCGCTACAGCCCTGCTCACCCCAGCTACATCCAGAGATTAAAACTCCTGTGAGCTGCCGGTCTAATCATCACTCGCCAGTCTAgtggcaaagaaaaaaacaattccactttgtttattgaattatatCGCAAACCATGtagtttacaaaaaaatatatatatgcacaagTGTCTtgagaatatttttttgttgttcttttatatTCTTCTATATATTTCATTCAGGATTCTCAACACATTGAGTTGTGCTGTAAGTTTCAGATTTAATGCAGGTTTCCtttattgtgtatgtatgtatgtatgtatgtatgtatgagtgtgggctttgttttaataataataataataataataataataacaataatagtaataaaaatatataacaaagcCTGTTGTGTTCTAGTCTGCGATACATTTCAGAATACAGATTTGCCTAGTCAGTTTCAAAGTATGCTAACCGTCAATGAGCTACCATCCCTGAAATATGACACAGCAGCCAAAATGGCATCTCTCTCTGAATGTGTATGAACAAGATCGGTGAGATATCAGAACATGTACAatactattatattttatactagACATTCTTTAGtagtatcacagttcagaagcacaaatgtttttgcttatgaaactgtacattttgacCCAACTGCCAGTTTTATGcctaagtattttttttaaatatgatttcagGAATTGCCTTATTTTCCTTAAGAGGAACCAGCCTCCACCCAGAATTGTGCTATCTTGTTGAGGTAGTCTGTAATAGACAGTTGTTTCCTCCATCCCAGCTTCTACATAAACCATAAGCAGTGTATTAGACAGTAGCTTGTCTTTTCAAGTGTAGGTTTAAAGTACAGCTGAAAAAAATCGTGTACTTTGGTGTTTTTCCATATGTGTTTGGGGTTGTTTTCTCAAACTTTTGAGATTTACTTTAAACgcctgtattattttttgtctggtCATGGTCACACTGTTGATATTGCATGTGCGGCCTTGAGAGAAATTAAAACCCCTTTATCACGTGTAAGTGTGACATTTTGACACGTCTGCCGCCAAATTATTTTGTCACTCTACAGATCATTAAAGGGATGCTCTGGAAAATCCCTAAAACTGTATAATAGGATAACTTGGAATAAAAACCCTGCTAAATTATCCCGAATCAAATTAAACtgcttaaaattgtatttaatgaaaCTAAAGAAGAGGCATTTGGTAATAGATTTATTAGTTCAGATGATATGATGCATAATGAGAAACTAGATTTGCTTTGTAGACAAACATTATATTGGGGTTTTCAAATAAATCCCTCTGTccaatgcattaatttaatgcaAGAGAGGGCGGCAATGTGGGCACTGTTGTTCACTGTGGCAGTCCATTGAGGAAAACGGCCAACCTGTTGTGCTTTATATGATGAGCTACAGCAATTGTACATTTGAGACCCAAGTGTAAATGTCATAATTCAGTAGTGTAACATGGATTACTCCCAGTTACAAGAAATGTAGTGAAAAGCATAGTGTAGAGTTTTCATCTTTCATGTTGAGAAGCAGTTGGCTGAGTCGCGCTTACATTTTTGACAGGAAATTCACTAATGAGTTCTCGTGTTTTCCTACCAGGGAGAAGCATTAGAAACCATTTTAATCTCAAAATGTGCTGAAAAAGGCTGTTGtcagtcattgtttttgtaaaaggtTTTAGCAATTCATCTAAATTGGGCATTTACAAAGAATGAAATCAgctaaatattttcttcttaaaaatcaatcaaaccttcattatttgaaatgttgaactTATGTAAGTACCATACACCGTGGTGTGGTGGGAAATATGTGTTCTGCAGTgtcgcattttttttttttttttttaagcttcttCATGTAATACTTCATATAATATCAAATTGTTATATACAAAGATCATTTTTGTTCTGAGGACATTTGTGTGGAGTCTTCATAATCGCACACTGCAGTGACTCAGTGAGCATTGATGAATTTTGTCTTGGCAACGCAGAAAAATGTGCGGATGTGTACAATGAGGACTCTCAATCAAGTCTATGGGAAATTGTATGATAATAAAGCAAGCTGTAGTTAGATTGAATTAACATTGTTAGCAGGGCTTCGGGCTAGAGGGTAGTTAGAAGACAGCCATTGACAGCTTGTGTCAGGAACAAAATCTGATTCTAAGGTATTGTTCcgattgtgttttgttgttcagTAGTATGTCGCAAGCAGCTGACAGCTCATTATGGATAAAGTGGGTTTTATCCACAGAATGTGGTACTCACTAAGAacaatgtttgtattgttaatgAGGACGAGATTgtctgttgtaaaataaaaatcaattttattgGTATTGGAGCCCAAACTAGTTTTGACTTTGTctgcactttatatatatatatatatatatatatatatataaatatataaaatgaataaaaaataaataaaaccttgaaTAAATCGAGatgtaatacatgtttaaatagaGGAAACTTACTTGTTTACAGTGGAATTTGAGTTTGCTGCCATTTTACtctcttgttttttgtgttatgGTGGTTGTTCTTCTGATATTGGCTTGATATCGATGTAACCCTGAAAGCAGGCTGCGTTCCCTTCAACTGGGGTTTATTCTTCTCCAGATGAGAACTATCTAAATCTACAACTGGTGTCCTGCCAGTGTGGAGAACaagatttgtaatttaattgtgGCCTTCATCTTGAGGTCCAATACCTATAATGTACTTCAAAGAAtctcttcaaatattttttccacccctgtggtatttttaatttttatctgATGTTATCCCAATATGAAAGGATTGTAATATATATCTATCCTTGTTTAAACACAAAAGGGAGTTGCAGTTAGCAGTTTTGAGTACAGTGAAATGATATACTGTTTGAAATACTTGTACTGTCTTGTGATGGATTGAGACACTATTAGTGTCCGTGTGTGAGCAGGACAAATGAATGCTGTTCAAGTCTCATGGAACAGTGATCTGTGAGATGTGATTGTGGGAATAATAAACAGTTTTCTAAATAGTTTGTATTTAGAAACAAAGGTGCACAATTTTTCAGTGTTGAAAACAATTCACATTCTCTCTGAGCCCGAATTGCAATAACCAGCTCTTAACAGAAGTTTCCCAATCATGTAAGCAAACGTTAACTTAAGTCATAGATTagcctgttgttttatttaatgattattcagtccttttcttctttgttaTTCAATGTCTCCTTCTCTGTAATCTTCACTTTGAAAtctctggaaaatatatatatatatatataatgatgcaAAGGAGAAGATATTGATTGGGACAAAAAGGATGgacgttttgtttgtttttgttttgctcttcaCTGCAGGGCCGTTTCTTGAAAATCATAACCACTtgcttccatttattttctcatgtttttatatgtttatatacatataattcaGACAATACAATTTGATCTCTCATTGGGATCCTCGGTATAATGAAATCTCTCCTGGGAGATTCTAGTTGTCACCCTTGTGAAATATTGTGCTGTAATCTCAATGGTTTTGCTATGCCTTGTTTAGGGCTGTAATCATAAGAAAGATATCTGCTTTAAGTGTACTGATCTCATGCTTGTCATCATTATGGCCCAAGTCTTCTAATGTGCTTGGAGAGGAGAAACATTATCTGGGGCCATTGCACCTTGCAGACCTGAACACAGTGCTCCAGGGTGTTTTTCGTCGGCCCAAATCTCTATACATAGAATTTGCTGAACTGAAAATGTACACCCCCCACTCTTTACTTGCAAATTGTATCTGTACGATGAAGTGGGTGACATAAATTGAATGCAACAGAAGAACAATATATGGAAAAATGATTACAGCCTTAAAAAGAAAGCCATCAATATATTGTGATAGCTTTGATAGTCAAATGGTtttctgaattgtatttttattttctgaagccTTTTGTCAAGGGATTAGGCTTTGCGGCAGAGGAGCTTGGTAAGCTTGGAGCGTTTCCATTTGTCGTGTCAAATACTTCTCAAACTGCCCATCCAGCTTCTTTTAGCTTTTTAGTGCCTTTTATATTCTAACAATGTATGAAAACCTGTTGTCGTTTAACAGTGTAAAATGTGGCACAGACTTAACCTATGTGTCTTGTTCACGATTCTGAAGATAGGAACGAAGTAGCCCAAACTGAAATTTACACTCAAGAGTAGCATTGGTATATGCAGTTTCAATACCTCCTAAATAAGATTGTAAGAAGTTTACAGATTAGTGTATAGGATGTAATGCCAGCCTTACTACTTTATTATTAAAGCTTCGTAGTGCCAACAACATGGTACGCTGGAGTTGCTGTAAAATGTTGACTTCtcagacttttgtttttgttctgttctttggGTCCTGGTTTACCCCCTGCATGCATTTCTAGTCCTATTTTATCACTGTTTGTCAGAAGAAAGTGTTTGTTGTACtactgaggaaaataaataaatcggtGCACATGA

Function

GO: NA

KEGG:

id description
K21412 ANKLE2, LEM4; ankyrin repeat and LEM domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147479 lncRNA downstream 82258 16294830 ~ 16296445 (-) True G117710
TU147400 lncRNA downstream 353630 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 860522 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 860522 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 862421 15498662 ~ 15516282 (-) False AMCG00018617
TU147623 lncRNA upstream 762614 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1074746 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1123469 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 1193363 17584751 ~ 17585098 (-) True G117888
TU147764 lncRNA upstream 1343288 17734676 ~ 17736324 (-) True G117916
AMCG00018639 mRNA downstream 53487 16301914 ~ 16325216 (-) True AMCG00018639
AMCG00018640 mRNA downstream 85018 16289834 ~ 16293685 (-) True AMCG00018640
AMCG00018632 mRNA downstream 235367 16115965 ~ 16143336 (-) True AMCG00018632
AMCG00018633 mRNA downstream 282681 16089985 ~ 16096022 (-) True AMCG00018633
AMCG00018634 mRNA downstream 297377 16060706 ~ 16081326 (-) True AMCG00018634
AMCG00018643 mRNA upstream 3568 16394956 ~ 16409595 (-) True AMCG00018643
AMCG00018644 mRNA upstream 47243 16438631 ~ 16462363 (-) True AMCG00018644
AMCG00018645 mRNA upstream 73353 16464741 ~ 16485588 (-) True AMCG00018645
AMCG00018646 mRNA upstream 356265 16747653 ~ 16747961 (-) True AMCG00018646
AMCG00018651 mRNA upstream 521379 16912767 ~ 16923594 (-) True AMCG00018651
TU147284 other downstream 860522 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 862421 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 1640391 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 1857828 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 3122934 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 617510 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 834702 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 834702 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 1211968 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2074980 18466368 ~ 18474245 (-) True G118075

Expression Profile