RNA id: AMCG00018643


Basic Information

Item Value
RNA id AMCG00018643
length 7799
RNA type mRNA
GC content 0.49
exon number 22
gene id AMCG00018643
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16394956 ~ 16409595 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAATCGAGACACAACAACAAGGCTCACATCCCAATGCCAAAGCAGGTGCCAATTCTGCTGAGAGCACTACAGAGCTGCTGCAGCAGGGGATTGTGGGAAAGCCACCAGCTACCGGGCATGGAGTTAATGGTCCTGTTGCTAATCCAGACACAGTCCTAAATGGAGACAAAACGGCAGCAGGTTCAGGCGCTGCAGGCGAGAGCCACCCTAATGGCCCCCTGCCCCCTCTGCCCCAGGGCCCCTCTGCCAGCCCACAGACCGAAGAGCCGTCCTCAGGTGTGGCCGCTTTCCATCACAACCTAACGAAGTCTCAGGGAGCTAAGTCTGAGCCCACAGTTCATAAGAGTGATGCATTGCAGTCTCTCAAACTCAGTCTACCTATGCAAGAAACTGAACTGTGCTCCTTAGAGCCCTCCCTGGAGCTCGAGAATGAAGAGCAGATCCGCATCGCGGCCCGCAGGCGCCTGGAGGAGCAGCTGAAGCAGTATCGGGTCCAGAGGCACCAGGAAAGATCTCATCATTCGACCCCCAAAGGCCGCCCTTTCAGCACACTGGACCCAGAGTTGATGCTGCACCCTGACGGACTGCCCCGGGCCAGCAACGTCTCCATGACCAAGGAGTACTCCTTCATGCGTACCAGCGTGCCCCGGGGCCCCAAGCTGGGCAGCCTGGGTATCCCACAGCCTTTCAAAGAGAAGAAGTCCTCCAGGTCGTCTCGCTCCAGCAAGATCCGCTCCCTCGCCGACTACAAGAGTCCGGAGGCGGATGCAGGGGGCAGAGGCAGCTCCAGGTCCCCGGCGGGCGAGGCCTCCATGGGGTCGCTGAACTCCAACAGGAGCTCGTCGTCCATCGTGTCTGAGATCAGCGTGGCCTCGGAGACGGAGGAGCAGCTGGAGCCCTCGTTGCACTTGGGAGACAGCATTTCGGAGATCGACGGCAGCGAGTCGGGGGCACGGCAAGACGGCAACGACAGCGACAGCTCGTCCTACAGCAGCGTGTCTGCTTCGGCCACGTACGGCATGCTGTCGGCCATGGTCAGCAGGCAGAAGGCCCCCTACACCGTGGATGGCAGGGAGATCGCTGCGGATGCCGTGGGCCAGTACCCGTCTCTGCAGGAGGTGCTGCAGGCCGCCACGGATGAGCGACACTTGGAGGCTCAGGAGCCGGAGCTGATGAATGGAGAAGCGCGCAGCCGCAGAGACAGCTTTTCTAGCAGTGTGTCCCTGGGAAGCTCAGTAATGGGAAGTCATGATGAGATGCTGCAGGTCCTGAAGGAAAAGATGAGGCTTGAAGGGCAGCTGGAGGCACTTTCATCTGAAGCAAACCAGGCGCTGAAAGAGAAGACGGAGCTGCAGGCCCAGCTGGCCTCCCTCAACGCCCGGCTCCAGGCCACGTTTGAGCAGAACCAGATCAGTCAGGAGAGGCAGAGCTCCCTCAGCTCAGAGGTGGGCACCCTGCAGCAGAGCTGCTCAGAGCTGGAGCGTGCCATGTTGGAGCTGCAAGGCAACCTGGAGAGCAAGAACGCCAACCTGGCATCGCTAGGCAATGACCTGCAGGTGGCGGAGGAACAGTACCAGAGGCTCATGGGAAAAGTGGAAGAAATGCAGCAGATCGTGGTCTCTAGGGACAACTCTGTCCAGGAGCTGCGGCAACAGATGAGCAGCATGCAGACCCAGCTGCAGCAGGTACAGCGGGAGCGCAACACCCTGCAGTCACGGCTCAAGACCTCCCAGGCCGAAATCGCCTCGCTGCAGCAGGTGCGCCAGTGGTACCAGCAACAACTGGTGCTAGCGCAAGAGGCCCGGGTCCGACTGCAGAGCGAAATGGCCAACATGCAGGCCGGTCAGATGACGCAGACAGGAGTGCTGGAGCACCTGAAGCTGGAGAATGTGACACTGTCCCACCAGCTCACAGAAACGCAGCACCGCTCCATCAAAGAGAAGGAACGCATTGCTGTGCAACTGCAAAACATAGAGGCGGACATGCTGGACCAGGAAGCAGCCTTCCACCAAATCCAGGAGGCCAAATCAATGGTGGAGGAGGACCTTCAGCACAAACTGGAGGAGTTTGAAGAGGAGCGGGACCACCTGCAGAAACTGGCCAACTCCGCCAGCGCTCTGGAACGGGAATTGCAGCAGGTGAAGCTGGCCCTGGCCCAAAAAGAGTTGCAGCTCACGGCGCTGCAGCAGGAACACTTGGAGCTGATGAGGCAGCTGACAGCCACCCAGGAGGCCCTGCACACCAAGGAGCAGTCCCTGAACCAGCTGGAGGCCCGCTTTCTGGAGCTGGAGGCCCAGCTGAGCGAGCTACAGGCCGACAGCACGGCCAAGGAGGACTCCATCCAGTACCTGCAGAATGAGAAGATCGTGCTGGAGGTAGCGCTGCAGGCTGCCCGGGCGGACAAGCAGGGGCTGGACAAGGGAGTACAGCGGCTCGGGGAGGACACGGAGGCGGCCTCCGAGATCCTGGAGCAGCTTAGGCAGGAGGTCAAAGTCAAGGCCACACAGGTCATGGTTGAGGCCTATAGGCGTGATGCCAGCTCCAAGGACCAGCTGATCAGCGAGTTGAAAACCACGAAGAAGAAGCTGCTGATGGAGGTGAAGGGGCTAAAGCAGGAGCTGCTGAACTCCCAGGTGGAGAAGCAGGCAGCTGAGCTGGAGCAAAGCCGGCTACAGAAGGAAGTGTCTCGGGTCCAGCAGCAGATGACCCGGCTGGAGGATCACTTGCAGACCgtgcagagcgagagagaccgGTTAGAGACCCAGATTCAGTCCCTGCAGTTTGACCAAAGTCAGCTGGCATCGGTGACAGAGGAGAATGAAGGTCTACGGAAACAGGTGgagcaaatgcaaaaagaagcCAAAAAGGCTATCTCGGAACAGAAGGTGAAAATGAAGAGGCTGGGCACAGACCTGACCAGCGCCCAGAAGGAAGTGAAGGCCAAGCACAAGGCCTACGAGAATGCAGTGGGCATCCTGAGCCGGAGACTGCAGGAGGCACTGACGGCCAAAGAGACCACGGACGCAGAACTAAGCAAGCTGAAGGCCCAGGTCACCAACGGAGGCAATAGCCAGGCCTTGCAGGACAGAATAGAGACCCTGCAGACTGAACTCCAGGCAGTGAGCCACAGCAAGGCCATGCTGGAGAAGGAGCTACAGGAAGTGATCTCGCTCACCAGCCAGGAGCTGGAGGAATACCGGGAGAAAGTGATGGAGCTGGAAGATGAACTCCAGGAATCAAGAGGGTTTAAGAAGAGGATTAAGCGTCTGGAGGAGCTCAATAAGAAGCTGTCGCTGGAGCTGGAGCACGAGCGTGGGAAGCTGGCTGGAATGGGCcagtcccacaatgcactgcggGAGCACACTAACATCCTGGAGACGGCCCTGGCCAAGAGAGAGGCAGACCTGGTCCAGCTCAACCTGCAGGTTCAGGCTGTTTTGAAGcggaaggaggaggaagacaaTCAGATGAAACAGCTCATACAGACACTACAGGCAgctttacagaaagaaaaagccaCGGTGAAGGACCTCAAAGATCAGGTGGCCGTAGCCAAAGCAGAAGCAGCTCATAACAGACGGCACTACCGAGCGGCCATGCTGGAGCTCAGCGAGGTCAAGAAGGACCTGCAGGCCAAGGAGCAGCTGTTTAAAGCGATGCAGGACGAGGCGGAGAAACTCCAgGCTCAGGACGAGAGGCACTCCCAGGAGGTTTCTCAGTTCCAGCAGGAGTTGTCAGAGGCCCACTCCCAGCTCCAGCTGTTGCAGAAACAGCTGGAGGAGCAGCTGAACAAGCAGCCTCTCACCAATCAGGAGGTGGAGGATCTGAAGTGGGAGGTGGAGCAGAAGCAGAGGGAGATCGAGGCTCAGAAGCAGCAGCTGGAAATGGCGGAGCAGTGCAGCCACAGGGAGCTGGAGGGCCTGCAGACTGCGCTGCAGGCCATCAAGGCAGAGCTGGAGGTGGTGCAGGAGGAGCTGAGCTGCACCAGGAAGGACAAGTTCATGCTGCAGGCCAAGGTGTGTGAGCTGAGGAGCAGCATGAAGACCCTGCTGCAGCAGAACCAGCAGCTGAAGCTGGACCTGAAGCAGAGCCGCACCAGGAAGCGGATGGAGCTGAAGGGCGACGTGAACGTATCCAACCCCGTGACTCCGGTGAAGATCCCAGACTGCCCCGTCCCGGCCTCCCTGCTGGACGAGCTGCTGAAGCCCCCCGCCTTGGTCAGCAAGGAGCCGCTCAACAACCTGCACACCTGTCTGAAGCAGCTCAAGCAGGAGATGGACAGCCTACAGAGACAGATGGAGGAGCACACTTTTACCGTTCACGAGTCCATGACCTCGTGGACACGATTAGAAGGAGAGCTAACGGGACTGTCGGCTACGGACAGCAACTCGCCGTTGGAATCGGGGCCAAGCGACGGCTCCGCAGAGCCCGGCCCCCATGCAGTGCAGAGAGAGGCGGCCGAGCGCTCCTAACACTGGGCACGACGGACTGAGCTTCCCTGCGCTGGAaacctttctgttttgtttatccttctcccccccacacctttttttttacaacccCTTATGCTGGctaatttattgtatgttttgaaattgttttattataattattattatttctaagaAATTAATGACACCCAAATCGAGAACCACATATAGAGAGGTAGCAGGTTTGGATTTGCTTTGGCTTACTGAAGTCATATCTACAAAGCAAACCTAAAAATTTATGGTTATGACGGTTGACTCCCctactacattttaattgagttttacactacccccccccgccccatctttttttaaattatttttttattttattttattttttgtcagatgTTCTGGTTGGATAGTGTGATAGCTGTAGTAGCTCAAAGGGGAAATGAGTACCATTAGAAACTGTGTCTTTGCACATCGAGGCCTCGTTTGTGTGGCTTACCATACTGTTCTTCCTATCCACTGTGCCTCTGAATGAGAGGGCTCGCTcggggaaaaacacacacacacacacacacacataacggaaaaaaaagacagtgttGTCCACAGTCTATAGTCTTTCAATCGAGTATCAGAACTTTTTAAACCTGCTCGGCTTCTGTATTCCAAAATTCCAAGACGTCATGTctctaaaaacaagaaaaagcatCAAGCCATGAACTTCCATTCTCAAAACCCCTGCTTCACACGGTCGAGGAAGCTGACAAATGGCTGTGCATGTTTCTACAGCATCTTACAGCCTGCCTTTCACGTTCGAATCGCAGGAATGTATTGGTGATTGTTGAAGATGCCGTTTGCTTTGTCATTTAGATAATGCTTACCAAGTATTGCTTTGCCATCTAAAATGGTGTGAAGCTTAATATTTAGTGTGCTACTGTTGAgctcaatatattttaaataccatCCTGTAACGGTGGGGTTTGTGGTTTGGCCTGAGTTGTTAGTAATGGTTATGGCAGTGCCATAATGACTAGAAAAAAGTCACCAATAATATTTTATTGGGAAAtttaatatattgctttttGAATGGATGTATCTTcagttgtaaaatatatatatatatatatatatgtaaaagaTGTATCTAGATCTCAAGGGGTAACCCGCTGTGTAGCAGCACTAACTGATAACGTCAGAAAGATAATGGCTGAAGTTGCACGCTTTATGTAACAACACATAACTGACCTAAAAACAGAGGAAATAtctttatacaaaacatttagtttGCATTTGTATGCAAGGTActctttaatttattgttttattttttgttgtttgtgttttgattgatatattttaaagaaaattaattgtcAAAGATTTGTTGTTTCTCATGCGATCTGTTCAGTCTTGTACAGCGTTAATGATAGTGTGCATTTCTTAAGGGTTTGGGTTTATGGTTAGTCTTGTGAGGAAAGAAATGTTAAACAATGTGTTGTACGGaagattattttctttgctctgatatttataaatattgacATGGATTTAGGGATTTCCTAGGGCCTCTTAAACTGAATCAAATCCCAGATGttgcaaaagctttttttgaTGCAGCTCTTTTCTTGTTGAAGAAGGAAGGTCCTTTTTGTCCTTATTGAAAGAAAAGCTGCTGCACTCAAATCAGTTCCTCTAATGGAAAGAACCGCTACACTCAGTCCCTACAGCAGTTGGTATTAACTGCCATATAATATTGGAACCTTTCTGCTTGAGTTAAACACTTGTTCAAAGTCTGTAATGTTTGCTGTTAACAAATTTGGCCAGTATACCAAACTTGCAGCTCAAGACCTTTAAGTGTAGCATAACATAACAGGAGCAAGATGTACCTAAAgggacattttattatttatttatgaacagATATTGACATTTGTCAATTTCAGCGTAATTTCCAATCAGAATTAAGAAAGTGTGGATGATACTGTTAATTCTGATATCCTTCTGCCTCAGTAAATGCAAAATTGTCACAGTCCTTCACTAAAACTGTGGAGAAAGTCATCCTAGTGACACTTTCGAACCGTTAAGTTGTTGTAATCCTTTTTGCTTGAATTAACAAAAATAGGTTTCAGCGGATATGATTGCCAAATGCGTAAACTATTTTGTGATGACCAGTCATAGGAGATGTTGCGTTACTGCAAGTTCTTGATATTGACCTTTCATTGTAGAGATGTTTTTCTGGTCTTTTTCTCTATCCCTGTGGGGTAAGGTTCGCTTCAATATGGAATTCTCTATGTACTGCAGTTGTTCTGCTTACCTCTTGCATCTCTTTCCAAACTGCTgaaggtttaattatttttaatttaaaaaaaaaacagcaactgaaTAGCATTGTCTGAATAAtgccaaaactaaaataatacgAATATTAGGACTTTTTACCATTTGTACATTCGTCTAAAAGTTGCATTATTCCATTAAGTAAAGTTACATCCTTGCTATTTTTTATCAAACAAAGTATTGGATGTGATCTTGATGATGGTTTCTTTAAGGCTTTGTTTATGAGTCTGTGTGATACCTTGGATCCTGTTTTGCAAAGAGAGTATgggtaaaaatacatttatgtgtattgtgtgcAGTCAGGAATGGGGGTTTCTTCATCAAtcgtatgtatttgtattattattttatcaattcATAAAATGTGGTCTTCAAGGAAAAGTCCCATATATCAATGTACTCCAGAGTGAATTTTGCCCCATATGTAGACTTGTACTTTGGTATAGATAAATCATACACTGTAAGCATAGAAAAACTACTAATCTTTGTGTGTCTCGATGGATGAcctgatgaaaagaaaaatgttataaaaccTAATATTGTTCTTTggctaaaaagaaaaaggaataataaataaaatagggaGAATAGGCACTAAGGGGTGGTTTCACAGACtctgattagcactagtcttggtcTACCCTATATTATTTTAGGTAGTGttgtccaagactagtgctaatcaatgTCTGAAACCAGCTGAAAGTGCTTATTGGTTAAAAATAGGTTGCTGCAAACTGAATGTCTGTAAAATGGTTCTGCTTTTGTTAATGTAGTACTTGTAGTATGGGTATAGTGTACATAGTTAAAAAAGTATTACTGTAATACCAAGATTTctacaaaaaaaacttaattactGGCTTTTTGTTGAATACATAAACCACATAAACTTTCCTGAGCTTGAAAATTGTAAAGGTTAACAAAGCAaaagcatgtttaaaacaaagatgAAGAAAAGGTGCAAATTATTTCCTTTAAGTTCTGTgcaataaactattttttggTAAACTAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147479 lncRNA downstream 98511 16294830 ~ 16296445 (-) True G117710
TU147400 lncRNA downstream 369883 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 876775 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 876775 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 878674 15498662 ~ 15516282 (-) False AMCG00018617
TU147623 lncRNA upstream 744407 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1056539 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1105262 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 1175156 17584751 ~ 17585098 (-) True G117888
TU147764 lncRNA upstream 1325081 17734676 ~ 17736324 (-) True G117916
AMCG00018642 mRNA downstream 3568 16378703 ~ 16391388 (-) True AMCG00018642
AMCG00018639 mRNA downstream 69740 16301914 ~ 16325216 (-) True AMCG00018639
AMCG00018640 mRNA downstream 101271 16289834 ~ 16293685 (-) True AMCG00018640
AMCG00018632 mRNA downstream 251620 16115965 ~ 16143336 (-) True AMCG00018632
AMCG00018633 mRNA downstream 298934 16089985 ~ 16096022 (-) True AMCG00018633
AMCG00018644 mRNA upstream 29036 16438631 ~ 16462363 (-) True AMCG00018644
AMCG00018645 mRNA upstream 55146 16464741 ~ 16485588 (-) True AMCG00018645
AMCG00018646 mRNA upstream 338058 16747653 ~ 16747961 (-) True AMCG00018646
AMCG00018651 mRNA upstream 503172 16912767 ~ 16923594 (-) True AMCG00018651
AMCG00018649 mRNA upstream 553448 16963043 ~ 16977083 (-) True AMCG00018649
TU147284 other downstream 876775 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 878674 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 1656644 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 1874081 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 3139187 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 599303 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 816495 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 816495 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 1193761 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2056773 18466368 ~ 18474245 (-) True G118075

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060157 True 5826 mRNA 0.49 24 NC_007116.7 18965494 ~ 19006290 (-)
grasscarp (Ctenopharyngodon idella) CI01000071_01392755_01411463.mRNA True 5733 mRNA 0.49 23 CI01000071 1392755 ~ 1412681 (+)