RNA id: AMCG00018645


Basic Information

Item Value
RNA id AMCG00018645
length 4570
RNA type mRNA
GC content 0.54
exon number 17
gene id AMCG00018645
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16464741 ~ 16485588 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGAGGAAAGAGGCGATTGCTCAAACCCCCCATTAAATCCTATTAAAGTCATCatcaggaaaaacacacacctcGTTGTGCCATTCCTTCGTGAGCACTATGGGCCCAGTCATCTTGTGGCCGGGCTCCAGCAGACAGACTTGAAACACGGTCTGACAGCGAATGAGAATCTCGAATCGAAGAACTCCAGCTCCACCAAAGTCTCGGGGCTTCAGCGCAGCCAAGAGCAGAGCACTGAGGTGTCCTTTGTGCCACCTGCCCCCAGCCCCACCCCAGCGTCCCCCGCGGCTGGCTCTCCTGCGCCCGCCGCCGCCGTCATCGTCGCGCCCCCTCCCAGCGCCTGCGTCAGCCCCCCGTCCGCCCCGCCCGCCCCGCCTGTCAAGAAGGAGGTCGCTCCACCGATACCTACCCCTCCCCTGCTGACTGTCCAACAACCACAGCCCCTACCGGAGCTCCAAGCTCCGCCTCCCCAGCTTCACCCCCCACCTATCATCCATCACCAAGTGCATCGTTCCTTGCATTACAACGGTCTGAACAATATCAGCCGGAGCAGCAGTGCCAGCAGCACAACCAGCGTCAGCCACCCCAAACACCACCtgcccccatccccccaccTGGCCAGCCACCCCTCCTCCACCCCTGCCCTGCCCCTGTCCATTGCCAACCTTGCTACCTCGCACTATTCACTGCGAACTCCGGCTCTCCGCCATCCGGCCATGTTCGCAACCCCCGCCACACTGCCACCACCTCCGACCTTACCAACCAACAGCCTTGTGGTCCCAGGGCACCCCACTGGAACCGGCTACCCAGACACATTATCAGACATATACCAGCCTGTTGATATCATTCAACCAACCAATCATGTATTGCCAGCCTCATTCGGGGATTCTGATTGGTACTTTGTCACAGGCAACTCTCTTACCACCACCAATGAGTCCTCACGTAGAAAACCCTCACAGCATGAGCTGGAGAAACAGGGAATGCCAGAGCATGACCTCCTACGCCAAGAGTTGAACAACCGCTTCCTGGTTCAGAGTTCGGAGCGGAGCAGAGGGCCGTCCTCGGCCTCGTTGGCCCCAGTGTCGCTCCTGAGGGCCGAGTTTCACCAACACCAGCACACGCACCAACACCAGCACACCCACCAGCACACCTTCACGCCATTCCCCGCAAGTTTGCCCCCGGCGTCCATCATTGCACCGCCCACTGCACCTCCCATGGTGCGTACCCCAGCCCAAAATACTAAATCCACCTCCAGCAAACCCACAAGCCTCTTCAGCTCATTACTGGACAGATTCGAAAAGTACGCTCCGAAACTGGACAACCCCTTCCTGCGGCATTCCAATttttttcaATCCTATCCTCCAACGATGCCAGGCATGGCCCCACTTCTTCCACATGCAGGTCCCTTCAGCTCTCTCCAGGGAGCCTTCCAGCCCAAGGCCTCCAATCCTATTGATGTAGCATCCCGGCCTGGGGCAGTTCCTCACACCCTGCTGCAGAAGGACCCTCGGGTATCAGATCCTTTCAGGTCATCAGTCAGAaagccTGGTAAATGGTGTGCTGTTCACGTACAAATTGCCTGGCAAATTTATCACCACCAGCAGAAAATGAAGCAGATGCAACTGGATCCTCACAAGCTGGACATGAGCGGGAAACTGGACCTGTTCAGCCGTCCTCCTGGTCCAGGTCATCCAGCTTCTTCTCCCTATGGGCCCTCCCCTCATCACAGCAGCTTCCTGCCTACCCCTCACCTGGCAGATCCATTCAGTCGCTCCAGTTCCTTTGGCGGTCTCGGCAACCTTGCAAGCAGTGCCTTTGGAGGATTAGGCAACCCCTCGCTCGCCTCCAACAGCATTTTCGGACACAAAGAGGGTCACGGGCTGCCCGGCTTCAGCAGCCCTCATCACGACACATGGAACCGTCTGCACCGCACCCCGCCCTCCTTCCCCACTCCTCCGCAGTGGCCCAAGTCCGTTGACATGGAGCGCAGCTCCTCGGTCAACAACCACGAccgggagagagagcgagagagggaaagggaacaGGAGAAAAGGGAGTCGTCCATTAGcaaggaggagagggagaaagacagAGATTCTTTGGATAGGAACCGTCACTCCAACAGGTCCTCTCCGGCATCTGCTCCCGTCAGTTATCAAATCAGCAACCTCATCCGCAGCAACAGCCAAAACTCCAGCGACACGGGAAGGCACCGCAGCGGCAGTGTGGACCGAGTCCGGGACTCTGAGAAGGAGCTGCTGGAACGCCAGAGAGAGGCGGCACTGCTGGGCGACATCAAGGTGAAGGAGAGCCGCTCCCCAGGGAAGGAAATTCAGGGCCAGGAGAGACGCCCCTCGGAGGATACCTGCAAGCCCAACACCCACCAGCCCCCGTCCCCCTATGCCAAGCCTATTCTGACGGACACGGGGCTGAAGCTGGGCGGCTCCCTGACGCCACTCAAAGAGGGCGAGAGGAAGGAGCCGCCCCCAGGGGAGCTGATGCACAAGCTGAAGAACGATCTGAAGATCAAGGAGGAGCGCAAAGAGGACCAGGAGGTGTTGGTGGTAAGCTCTGAGCCACCCCCCTCCCAGCCGCCCCCTCCGCAGATGCACCATCACCACCCCCAGCCACCGCCCCCCCGCTGCACCGACCTGCCTACCCCCGGCTCCCTGCACGGAGTCCACCTCCCCCACTCCATGCCTCTGTCCATGGGCAGCATGCATCAGATGGGCAGCCTGAACGTGCTGGACCGCACCCGCATGGCCCCCTTCATGGGTGTGAGCCCGCTAGCGGCCGGCAGGGAGCGGCTCCCCCACACAGCCTTCTGGGACCCTCTGAGGGAGGCCTGGAGCCTGCAGCGCCGCATGGACTTCCAGCTGCGGGCGGAGCAGGCCCACCGTTTCCCCGGCGTGTATGACCCAGAACGGACGTACAGGGACCGAGAGCCCCACGACTACTCCCACCATGAGCAGCTGCTGGAAGTGCGCCGGGAGCAGGAGAGGATGCGGCATCAGGCCGAGGAGCGGGAGAGGATGCACTTCCGTGAGGACCTGGACCGGGCCCGGCTGCACCAGCTGCACCAGTCCCCCATCGAGGGCCACCTCCCCCACATGCCTCCCTTCATGTCTCCCCTGGGCGGCATGCACTACCCCAGACTGAGCCCCTCGGCCGCGCACAACGGGATCCTCAACCGAACCCCCCCGACCGCCGCTCTCAGCGCCCCGCCGCCTCTAGTGCCAGCTGGCAGTGCCAGACCCGCCTCCCCCCGAAGGACTACCTCCGACCCCCGGGACTACTCCCCCTCCCGTAATCCCAAAGAGGTGGAAGCTCGGTagcttctgaaattaaaatgacaaatgacactttttaaagatgaaaatgcaCTGCttttatgagagagagagagaaagagagagagacggacagaagcaaattaaaactgtacatttataaGGCAGATGAAGCacatttcatgcttttattttaagggACAGGGAAGGCGGGGGTCGGGAAaggagtatttaaaaataaagaaataaataaaagtacaaaccCAGTCTGTACTTTCTTTGCCGACTTAAAACTTGAGATTAATATATTAATCGGATACTTTTTTCACTTTCCACACGCAAAGTGGGATTCTGAAACAAGTTTGTACATTTCCTTTCCTCTTTCCTTGTATAGAAGTCATTTTTATGgatttatatttctcttttgtttttcctgtattcacttggatttttttttttgagatcTTACATTATTTATCCCAGTTCACTGCGAGAAACTGCTGAATCTCAGTTAcatggggatttttttttctttaaaatgtatcttgttttcttgattattttattttctcctctatTGTTACCACATTTGGTACCTGGAAATACTCAGAAACGACAATGTACAGAGTTACattacaggtttttgttttgccttattAAGAtatgcagaaaagaaaaaaaaaaagaaattacgaggtcttttgtttggtttctgtataaaacaaaatgtaaatatcttgTTGATATTCCTTGgaacaaaagaaatgtaaatttattaggctttttaaatgtttctagaaaaaaataaacaaccactTACCAATTGATCACCATGGTTTCAGAGAAGGGCGTTGGGTTCAGATTTCAATGATGGGGGCGGGGCCTCGTGTGATGTAATCTTCAATCTATGCAAAGAGGTGCTGAAATGGCCAAGTTGATGGACATGTGGCATGAGAAGCATTGGAGATGTTGACTGAGCGGAAGGAACATGGATTCAAccgattttattttttattattaaaagaatacaaaaaagactTCCGGACCACAGATATAATATAACTGAAGCAAAACAGCCTTGTAGCCCCAGAGAAACAGGCAGGAAGAGGAAGACACTGTTTGATCGGGCGGCAATAGACTCTCTCTGTCGACCTTGTGGTGTTGTGCGGTGATTTGACTCTTGTATACGAAACCAGTAGAGTTTTAGGcgtgcaaaaaaagaaaacgaaaattcatggttttaaaaaaagacaaaaaaatgaaataaaagttcGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147479 lncRNA downstream 168296 16294830 ~ 16296445 (-) True G117710
TU147400 lncRNA downstream 439668 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 946560 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 946560 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 948459 15498662 ~ 15516282 (-) False AMCG00018617
TU147623 lncRNA upstream 668414 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 980546 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1029269 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 1099163 17584751 ~ 17585098 (-) True G117888
TU147764 lncRNA upstream 1249088 17734676 ~ 17736324 (-) True G117916
AMCG00018644 mRNA downstream 2378 16438631 ~ 16462363 (-) True AMCG00018644
AMCG00018643 mRNA downstream 55146 16394956 ~ 16409595 (-) True AMCG00018643
AMCG00018642 mRNA downstream 73353 16378703 ~ 16391388 (-) True AMCG00018642
AMCG00018639 mRNA downstream 139525 16301914 ~ 16325216 (-) True AMCG00018639
AMCG00018640 mRNA downstream 171056 16289834 ~ 16293685 (-) True AMCG00018640
AMCG00018646 mRNA upstream 262065 16747653 ~ 16747961 (-) True AMCG00018646
AMCG00018651 mRNA upstream 427179 16912767 ~ 16923594 (-) True AMCG00018651
AMCG00018649 mRNA upstream 477455 16963043 ~ 16977083 (-) True AMCG00018649
AMCG00018650 mRNA upstream 582624 17068212 ~ 17070690 (-) True AMCG00018650
AMCG00018652 mRNA upstream 670632 17156220 ~ 17168116 (-) True AMCG00018652
TU147284 other downstream 946560 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 948459 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 1726429 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 1943866 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 3208972 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 523310 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 740502 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 740502 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 1117768 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 1980780 18466368 ~ 18474245 (-) True G118075

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058657 False 4971 mRNA 0.48 15 NC_007116.7 17624463 ~ 17753961 (+)
grasscarp (Ctenopharyngodon idella) CI01000071_02107452_02124157.mRNA True 3465 mRNA 0.54 14 CI01000071 2107365 ~ 2124403 (-)