RNA id: AMCG00018647


Basic Information

Item Value
RNA id AMCG00018647
length 3943
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00018647
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17141389 ~ 17149356 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttccagtgccAGGAAATCTAGGCTGTTTCAAAGACAGTGGCCATCCTCCAACTTTGACAGGCCCAAGTGAGACGTCAAACAAACTCACCATTCAGAACTGCATTAGTTTCTGCAGAAGACAAAGATACAAGCTTGCAGGAATGGAGTCGGGCTATGCCTGCTTCTGTGGGAACGATCCAGACTACCGTAGACACGGCGAGGCAGCCAGCACCGAGTGCAATCACGTATGTTTCGGGGATCACACCCAGCCCTGTGGAGGTGATGGGAGAGTCATCATCTTTGACACTCGGGTGGGGGCCTGTGGTGGGAATTACACCACACCATCAGGAGTCATCTATTCTCCTGACTTCCCAGACAACTACGGGACCAGCCGTGTTTGCTACTGGACTGTCCAGGTACCGGGGGCGTCCGTCATCCTCTTCAACTTCACCTTCTTCGACATTGTGGACTCCACAGACATGGTGGAGCTCCTGGATGGCTACAACAATCAGGTGATCGCCAGGTTCGATGGCAGGAGCCACCCTCGGGACATTATCAACGTCACTACGGACTTTGTCATCTTGTACTTCTACTCTGATCGGACAAACCAGGCCCAAGGATTTGCGGCTGTATATAAAGCATTCAAAGGTGAGAAGCCGAAAGGGGTTGAGGAGCCTGTGAGTTCGGTGTCACCCGAATCCGAGGTGGTAACAGAAAAGGCTAACATCAGTTTAAATGCTGTCAGATCCTCTCAGATCTTGTATGTCATCACATCCAGCCCGAGCAAACCAGACCACAACATGCCAgTGTGGACCATCTATGTTTTAGCTGCCCTTCTCACACTGACTGTCATTGCTATGGTTGCAAAGTTCCTCCTGCACGTAACCGTAAAatccCCAACAATCCCCTCAATCAGCGGCTCGGAGGCCTGCAATCAAAATGCGTCGTCTGAACCCTGGATCATCTTCTACAGACCTTCCACCATTTCCTTCTTCAAGAAAAAGCTAAAGAACCACCATGGCGATCTCAGTCCCTTAGTGAGAAACTAAGGAGGCACCCAAACCTGTGGGAATGTTCTCCCCAGGAAACGAAACAATACTGGGTAACCACATGCAGACTTTTGAAACAAGTGAGCTCACACTTCTCAGACTGGCAGCCAGCAGAGATCCAGCACGGACCAAACGCAATCAGTGACAAACTGAAACAGTACACTAGTCTACGGAACTAGACCATGTTTGGTTTGCTTTGGCTTCCTGCTTCCTGCTTCCTGCTTCCCGCTTCCTGTAAGAGTTGCTGCCCTTAAATACTGGTGCCTTAAACGCTGTTGGAAAATCTCCTCCAGGGTTGAAAAACGGGCACACGCACTTATCACAAAAGGTCACATGGAAAGAGCTGGAACTGTGGACAGTTGAGGAAAATGGACAGCTTCTCTCTGTGTACCATGGGGTGGCACAAAACAGGAGACAACTCCCTGCGCAATAAGACAACTATCATCAATTACATTTACGGTGTGAGCTACTAGTCGGTGGTTTTAATGTGTTACTAAGGGTTGTTAATCCTGCCAGTTGCAGAAGGAAGAATCTGAGATGGGATAAGACAGATGTTCGACCATAGAACTACCAAATGGAGCAATATGTTTGGATAAGCATCAATGGAAAAGAAACGATGCCCCTAAAAAGCAGGAAAAGGGATCTGTTGCtgtctttttcatatttttttccatcataACCCGTTTTATACCCATAATTCCACATTCCCAAGTGTATGCACCTGTTAggatgaattattattttaaaaaaactgaaaaaactggATGAGCTCAGATAGAAGAACCAAATAATAAGGGTGCTGTGGGTATGAGAATGTGGAAAATCGAAAATACTGCTTCAAGGGTCTGTTTAAGGGGGGGCTTAAGCTCCTCCTCCGATCTCTAGAAACATTTCACTCTTACTGCTGGGGGCTCTGATCTTTCTGGTCGGATCACTTACAAGTGCCTTAAGTATGACTAAAACTGGGCTTTCTAGGGAGTCATTTTGATTCACCACACACTAAACGCATCATCCTTCTCTGTGACCAAAGCTTGCCAAATTGTTGTCAACAGAAAGGAGCTGATTGTCACAGATAAGTATGCATTTACTCTAAGGTATAAAGCcagtttatttctgcttttaaacCAGTACAATAGCTCTACCTCGAAGAGCTAAAAGTATGCCTAAAGTATCCATTATGTTCGGTGTGCTATAAATATATGCCCtccatacattttatttttcacatttgagCGATTGgtaaataatactatatatcGCAACAACAGGCATCTTTGACTCTTGGGGTATTAACTCTACAGTCACCTGTCAACAGCCCCGCCATTCAGTCAACTCGCACACAATGGTAGACAGCCATAGCGCTGTCATTTAAATTTAGAGCAGGGATCGCCAAAATGCCATGGAACTCAGTGATCACATGGTAAATTAGCAACTGCAGATGAAATTCCCATCGAGTCTTTCGCTGCATCCTGAAACCTCAAAGCACTTTGTGGTAAAGCCCCAGCTACATCAACAATCAAACATGGAAGTGCAATCTTGTGTAAACTGAACATGGCAGCCATTTTGAACTGTCAGCCCACTCAACAGCGGGACCATTCCCCATTGGGGGAATCTAGGGAGGATGTCTAAACCTCACATATCCCAGCATGTTTTAAAAGGGCATGCGatctttcattttctgaatCGGGAAAGGATGTTGGTAATGCCCAAAGTATGGCACCTCCTTTTTGACCAGGAATAAAGAGCTCCTACTCTCCGCCAACTCTCAAACCAACGACATTCCTTACGACCGTCTTATGAACTATGAGGGAAATCAGACAGAGgaaattattatgtatgtggtcTCAATTCACAGAACCAATGAGGGCGAGGAGGGgatatattattaaaagaaaacatgttagaATGATGAGATTGGAAGTTGGAAGCATTTTTTCTAATGGTGTACAtgttgacaaaaacaaacttatgCAAGTAATGCCAACTTACCTGTTCTTTACATGTTTATTAGCACTTGTGTGTCAGAACAGTGTTGCATGTTCCATGTGAAGCTGATCAGACCTGTGGCTCTTCGAAGAGACTCTAAACTTCAATGCAGATTTGAATAAActgcaaataaagaaatgcacgAAGACCATAGAACTCTTATGTACCTGACTCTGCATGCACTCTCGTTAAGTGCACTCTTTCAGTAGTCTATAGGCCGATCAATAAGAGGGAATCTATTCTTTGTGgggttttttttgttggtttttcagAGCACTTCACACACCTGTCTTTACCTATTGTCCAGATCCATTCACAGCACAATCCCCACACGCGACTCTGTTTGTAGACAGATCTGTTggcttgtttttgtgtgtgtgtgtgtgtgtgtgatgtaatGTTTTACTTTGGTCAACCAATCAACTGTAATGTATATTGTTGAAAgaacaagaggaaaaaaacggttgcattttaatttatataaattgttaaaGAAATTGACAGCCAAATATCCTtgtgtataatttatgtatACAAAGCAGTCGTATATTGATGAATTGACATCGTTTATAGCTCGCATACTGATTAAGATCCAAATCCCCTGCTGAAGTCTGCTCCTCTGCATTTACTTTAAATTGACCTCTTCATGATCTTACCAGCAAGAGAAATGCAGCAAATATCCTCTGCATCAGTGATTTGACCTTATCTGGATGTCACAGATATTCATATTCTGCTAACAGGGATTCTAAGaggttggggagggggggttaaaatattttgttgttctttctttgttttccattgaattgtaaataaaaaaatagtacgaatattaatttatacagtaaattattcagttattttggaCGTGATTGGGATATCATTTTCTATGAGTTAAGttaaattgtagtttttattgaatgtgtccc

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process

KEGG:

id description
K23091 KREMEN; kremen protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147592 lncRNA upstream 132143 17008898 ~ 17009246 (+) True G117783
TU147567 lncRNA upstream 391418 16748869 ~ 16749971 (+) True G117768
TU147415 lncRNA upstream 1019944 16083353 ~ 16121445 (+) True G117660
TU147317 lncRNA upstream 1442524 15695426 ~ 15698865 (+) True G117573
TU147318 lncRNA upstream 1446136 15693213 ~ 15695253 (+) True G117574
TU147612 lncRNA downstream 4426 17153782 ~ 17155824 (+) True G117801
TU147618 lncRNA downstream 11406 17160762 ~ 17161040 (+) True G117804
TU147619 lncRNA downstream 12158 17161514 ~ 17161723 (+) True G117805
TU147622 lncRNA downstream 74656 17224012 ~ 17224609 (+) True G117808
TU147627 lncRNA downstream 101513 17250869 ~ 17253023 (+) True G117813
AMCG00018648 mRNA upstream 51367 17071354 ~ 17090022 (+) True AMCG00018648
AMCG00018641 mRNA upstream 707086 16419039 ~ 16434303 (+) True AMCG00018641
AMCG00018636 mRNA upstream 762688 16373896 ~ 16378701 (+) True AMCG00018636
AMCG00018638 mRNA upstream 842678 16296038 ~ 16298711 (+) True AMCG00018638
AMCG00018637 mRNA upstream 854726 16280833 ~ 16286663 (+) True AMCG00018637
AMCG00018654 mRNA downstream 103799 17253155 ~ 17256857 (+) True AMCG00018654
AMCG00018655 mRNA downstream 141346 17290702 ~ 17296987 (+) True AMCG00018655
AMCG00018659 mRNA downstream 397604 17546960 ~ 17574431 (+) True AMCG00018659
AMCG00018662 mRNA downstream 428579 17577935 ~ 17584564 (+) True AMCG00018662
AMCG00018663 mRNA downstream 436164 17585520 ~ 17593696 (+) True AMCG00018663
TU147595 other upstream 71719 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2184809 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2353256 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2364895 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 2793648 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 831854 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 831854 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 1569850 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 2299270 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2821783 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_02927971_02953988.mRNA True 2902 mRNA 0.44 10 CI01000071 2926649 ~ 2954167 (+)