RNA id: AMCG00018648


Basic Information

Item Value
RNA id AMCG00018648
length 4043
RNA type mRNA
GC content 0.44
exon number 15
gene id AMCG00018648
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17071354 ~ 17090022 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGAATGTGCTTAAGTGGCAGATATTGTATCGCAGACAAAGTGTGGGCGTGTTTCTCATAGCTTTTTGAAAATATCCcccttttcatttgtgtttgttctgaaTTAATTGCAATTCACCGGGTTATAACACTTTTGCAGCCTCGTCAGCAGCACAGCTGACACAAACGGGTTCATATGACAgagttaataaaaaacaaatctcttctTATCAGAGACCTTTGATTTACACCCGTgcgtttttttaaacaaacgtCAACCATTATGCAGAGATAAGTAGACATTTGTATAGGTTACATATTACTGTTTCCTTTCAATGATCCGAGGGGactaaaaaaagacaaatattgtGATACATGCCAAACCACTCCATTAAAACAATGAAGAGAAACGCCAAGATGCATGGTCTGTTGCTTGCTACAGTAATCCTCTTTCTGATTACATTTATCTCAGCACCAGCCGGGGCACAGACCTGTGAAAATCACTGTGGCAAAAAAGCTGAGAATTGCTCTTGTCAATTTACCTGTGAGTCATTAACAGACTGCTGTCCGGACTACAGACAGTTCTGTTTGGAGATCTCCCCATATTCTGGCACTCTTCTGGGGGGGACTGATTTCTCGATCCTGCAAACAGTGTTTGAGCTGAGCTCCACACTTCGCTGCAGgTTTAATGGTGATATAGTAACAGATGGATATGTCGACATTGAAAGGAAAGGTCACTGCATTTCGCCTTTATTGTATGAAAGCGGATGGATTCCATTTGAGGTCTCAACAGATGGTGGACAAACATATAATCGCAAGGGAGAGTGGTTAGCAGTTCATCACAGTAAATTGGATTCTGAGCTTAAAATCAAGCTGGACAACGCAACAAAATGGCAGTATTATGGCACCCCTAACACAGCAGGATCCTTAAGCTTGAAGTGGAACACCTCTTTAATCACAGCGGACAATGTCAGTGTGGAGCTGTGGGGGTACAGAGAAACGGGTGAGCCCTATTCAGTCTCTTGGTTACCTGAATGGAAGTTCCTGTACACAGTTGAAAAAGCTGTTCCTAACAGTGGCACATTTAGCTTCACCCCAACCCCTGCGGGAAAACCCTTCTCAGACTGGGATGTTGGATCGATAAGAGTCAACCCAAGTACACCTCCAGAAGGGACAAGCAATGTCAATGCTCTTTGGAGTGGGGCTCACGCTCTGGCCTGGCACCTGGAGACAAAATTCAGAGAGGACTCTGCATCCTGGGCGCTCGACAAGTGCCTCAAATGGGATGAAAGTGAACGGGAGCTGCCCAACTTCCTGGAGGAGATAGCCGACTGCCCTTGTACATTAGCCCAGGCCAGAGCAGACACTGGCAGGTTTCATACAGATTATGGTTGTGATATTGAGAAGGGAAGTGTGTGCACCTACCACCCTGGAGCTGTTCATTGCGTGAGAGCCATCCAGGCCAGTCCCAAATACGCAGCAGGACAGCAgtgttgttatgacagcacggGGGCCCAGGTCCTGACCGCAGACTCGATTGGTGGAAGCACACCAGACAGAGGGCACGACTGGGGATCCCCTCCCTTCAAAAAGCCACCGAGAGTTCCCGGGGTTTCCCACTGGCTCTATGATGTCATCAGCTTCTACTATTGCTGCCTTTGGTCCGATAACTGCCACTATTACTTCACCCACCGACCGTCCAGTGACTGCAGGACCTACAAAGCCCCTAAATCTGGTATTGTGTTCGGAGACCCCCATTTTATAACATTGGATGGCTCAAACTATACCTTCAATGGGAAAGGTGAATACTATCTTGTGAATTCAACGTACAAAGCCCTGTGTGTTCAAGGAAGGACAGAGCCTGTGAAATTCGAGAATGGTACCTCTGCCAAGGCCACCAGGCTGTCTTCAGTAGCCATGCAAGAAAATGGCTCTGACATCATCGAGGTAAGGCTCACAGGCCAGCAGGACCATCTGGAGGTATTGAGAAACCAGCAAGTCCTTTCCTTCTCTGAGCAAAACTGGATTGACCTGAAAGGAGTGTTCCTGTACGTGTCTGTGCCTCAGAACGTCACGGTCATGTTTCCATCCGGAGCCGGTGTGGAGGTGCGAGCCAGAGGGGGTGTGATCAGCGCAACTGTTCTCCTCCCCAAGGAGTTTAAGAATCACACGCGCGGCCTGTTGGGTCTGATGAATGATAATCCACAGGATGATTTCGTGTTCCAGAACGGGACCGTCCTCACAGCTGAGCGCAGCAGCCCAGAGGGTTTCTTTGACTTTGGTGCAAGCTGGGCAATCACAAACGAAACCTCTCTCTTCACTTATGACTCGGAGTCATTGTTGAACACTTACTATTTCGCCGAAAAGCACGATTCCTCTTTTATTCCTGTTTTCACCGTCACCGAAGACCCCGGAGACCCCTTATTTGGAGAGATGTCTAAACTGTGCCGTGATAATTCCTACTGCAAGTACGACACACTAACTGCACGGAGCCTGAGTATTGGCAATGCCACCAGTATCTCCTATCAGAGCCACATGTCCCTTTTGAAACATCTGGAACCTGTGATTTCCTGTGGGTGGCTCTCGCCCCCAAAGAACGGGAAGAAGGAAGGCACAACTTACCTTGAAGGAGCCACAGTGAAATTAACCTGTAACAAAGGCTACGTCCTCTCGGGCTCGGCTGAACGCACCTGCCAGGTTGATGGGAAATGGTCTGGTGAAACCACTCACTGTGTAACAGATAATACCCTTGGAATCGTGCTGGGAAGTGTGTTTGGCTCAATAACACTCTTAGCCCTGATAGTGACGATTATCCTCCACAGCAAAAAGCAGAAAAGGAAGGCCGCCGCATCCTGTGTAACTAATGACTTGTGAGCAGTCAAATATtgcccaaaacagccctgaagTGCGTCTCCTAGCAGCCACACAATTAGTAATACCTGAAGTACAAGTTGAAAAATGAACAGCCAATCAGTGAAACTATTACAAGATTCTGTCAGTTTTCGATTTGTGCTTTGACAATTAATagtaccaataataataataaccaatttTATACACTAGACTAGATAACTACAGTGATATAATGTTTGTATCAGTATTACACTATGAAGCAGTTtataatttgattgttttacaCAGTTTTTAGTTTGAAAACAGCAGACCACCATGATTTTGTTCCACCTGTACATTAATTATGATGTCTTAGCTCAATATTGCAGCTGGCAGTAATGACTCATGGTGGCTTTTTGCTCTTATGCAACAGTATATAGCGGCTCTTTCAgctagggatttttttttctgttgctatTAAGGGGAAGGAGGGTAAATTGCTGTTAATTATGTTCAGATGAAATTACACAAAACCTAGCTTTGTTGCTATAGTACATTTAGATTTCCATGGATGTCTGACCTCGTTCTGTTCACTTCATGGTTCAGTCAAAGTTAACTGaccaaaacaagaaagagaatACTGTAATGAAGACTTTCCGATTGTAATGGCTTCAACAAAATACTCTCCTTACTTCCTAATATAGCCATTACACGGACAAAAATCATATGCCTAtgctgaaaaaatgaaaacggcAAAAACAATCTGGGAAATGCATCCTGTTTTGTTGACGTGTAACTGTTACTAATCACAACATGACAAATTCTGAAATGAATCCTGAAAACAATAGTGATGCAATGGTTCAATATGTATGGTATTCTGTTTGTTCTGCTTAGCCACACAATTCCAGTCACTGAATAATGtctgtaatatattaatacaacacTCCAGATGCTCTTTGCTGCCTGTGTAGAAGAAACGCTGCCTAATACAATCCAGTCTGCAAACGCCTCTTGTACgagttttaagtacagtttgaATGAGTGTGGAAGTCTTTTCTctttaaagcatgttttaattgGTCAATTGACATAGATCCCTGACTTccttttaaattacttattttttcagctGTCATTTCAGTTGTTGTAATCGTTGCTTTTATTTGAGCTTTTTGAGAATGTGATTGAAGACGTGTTGAGTGCTAATCATGAAATAAATTCCTGTTCaaat

Function

GO: NA

KEGG:

id description
K23820 SUSD2; sushi domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147592 lncRNA upstream 62108 17008898 ~ 17009246 (+) True G117783
TU147567 lncRNA upstream 321383 16748869 ~ 16749971 (+) True G117768
TU147415 lncRNA upstream 949909 16083353 ~ 16121445 (+) True G117660
TU147317 lncRNA upstream 1372489 15695426 ~ 15698865 (+) True G117573
TU147318 lncRNA upstream 1376101 15693213 ~ 15695253 (+) True G117574
TU147612 lncRNA downstream 63760 17153782 ~ 17155824 (+) True G117801
TU147618 lncRNA downstream 70740 17160762 ~ 17161040 (+) True G117804
TU147619 lncRNA downstream 71492 17161514 ~ 17161723 (+) True G117805
TU147622 lncRNA downstream 133990 17224012 ~ 17224609 (+) True G117808
TU147627 lncRNA downstream 160847 17250869 ~ 17253023 (+) True G117813
AMCG00018641 mRNA upstream 637051 16419039 ~ 16434303 (+) True AMCG00018641
AMCG00018636 mRNA upstream 692653 16373896 ~ 16378701 (+) True AMCG00018636
AMCG00018638 mRNA upstream 772643 16296038 ~ 16298711 (+) True AMCG00018638
AMCG00018637 mRNA upstream 784691 16280833 ~ 16286663 (+) True AMCG00018637
AMCG00018635 mRNA upstream 792553 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018647 mRNA downstream 51367 17141389 ~ 17149356 (+) True AMCG00018647
AMCG00018654 mRNA downstream 163133 17253155 ~ 17256857 (+) True AMCG00018654
AMCG00018655 mRNA downstream 200680 17290702 ~ 17296987 (+) True AMCG00018655
AMCG00018659 mRNA downstream 456938 17546960 ~ 17574431 (+) True AMCG00018659
AMCG00018662 mRNA downstream 487913 17577935 ~ 17584564 (+) True AMCG00018662
TU147595 other upstream 1684 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2114774 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2283221 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2294860 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 2723613 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 891188 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 891188 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 1629184 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 2358604 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2881117 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile