RNA id: AMCG00018649


Basic Information

Item Value
RNA id AMCG00018649
length 513
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00018649
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16963043 ~ 16977083 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCCTAGTGGAGGGACCAGGGGGACTCGGGCAAGGAGGTGCCGCTGCTACCCTAAGGGACGATAGCCATGAATCTGAGAGCAAGTATGAAGAATACGGCTACAACGCCCAGCTCAGCGATAGGATATCACTGGATAGGGCCATTCCAGACTACAGACCAAAAAAGTGCAAGCAAATGACCTATCCAGATGACCTCCCTCAGATCTCAGTGGTCTTTATCTTTGTGAACGAAGCCCTCTCAGTGATCTTGCGGTCTGTGCACAGCGTGGTCAATCACACGCCTGCTCACCTGCTCAAGGAGATCATCCTCGTGGATGATAACAGCGATAGCGTGGAGCTGAAGTTCAATCTTGACCAATATGTCAACAAGAGGTACCCAGGTTTGGTGAAGATTGTGCGCAACAACAAGCGAGAAGGTCTGATCCGAGCCAGGATTCATGGATGGAAAGCAGCTACGGCTCCTATCGTGGGTTTCTTTGATGCCCATGTGGAGTTTAACACCGCCTGGTAA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147479 lncRNA downstream 666598 16294830 ~ 16296445 (-) True G117710
TU147400 lncRNA downstream 937970 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 1444862 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 1444862 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 1446761 15498662 ~ 15516282 (-) False AMCG00018617
TU147623 lncRNA upstream 176919 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 489051 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 537774 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 607668 17584751 ~ 17585098 (-) True G117888
TU147764 lncRNA upstream 757593 17734676 ~ 17736324 (-) True G117916
AMCG00018651 mRNA downstream 39449 16912767 ~ 16923594 (-) True AMCG00018651
AMCG00018646 mRNA downstream 215082 16747653 ~ 16747961 (-) True AMCG00018646
AMCG00018645 mRNA downstream 477455 16464741 ~ 16485588 (-) True AMCG00018645
AMCG00018644 mRNA downstream 500680 16438631 ~ 16462363 (-) True AMCG00018644
AMCG00018643 mRNA downstream 553448 16394956 ~ 16409595 (-) True AMCG00018643
AMCG00018650 mRNA upstream 91129 17068212 ~ 17070690 (-) True AMCG00018650
AMCG00018652 mRNA upstream 179137 17156220 ~ 17168116 (-) True AMCG00018652
AMCG00018653 mRNA upstream 202006 17179089 ~ 17224239 (-) True AMCG00018653
AMCG00018656 mRNA upstream 290506 17267589 ~ 17290539 (-) True AMCG00018656
AMCG00018658 mRNA upstream 321181 17298264 ~ 17304621 (-) True AMCG00018658
TU147284 other downstream 1444862 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 1446761 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 2224731 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 2442168 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 3707274 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 31815 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 249007 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 249007 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 626273 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 1489285 18466368 ~ 18474245 (-) True G118075

Expression Profile