RNA id: AMCG00018654


Basic Information

Item Value
RNA id AMCG00018654
length 2413
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00018654
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17253155 ~ 17256857 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCTTTTAATATCGCGTAGCTGTCAGCGGAGGAGGAACTGCGGGGAGAAAGCAAGCCGTGACATTATTTCACCCCCAGTTCATCGACAGCGGCTCTGATTCAGATCCACCGGGGGATACGGCATGGTGGTTGTGACAGCAGGAGCGGGAGGCGCCCACAAGGTGCTGTTAATCTCCGGGAAACAGACAGCACCGTCCGCCGGCTCTCACGGGGGCTTCAGCCGGTCCATTTCGGTCATGTTGCCGTCATCCGGGACTCCGGCTTCCTCCGATTCGGATTCAAACGGATCCGGGCAGCCCCATCGGAAAAGGCAACGGCTCACACACTTGAGCCCCGAAGAAAAAGCACTTCGGAGGAAACTCAAAAACAGAGTAGCCGCCCAGACCGCCAGAGACCGAAAAAAGGCCAAAATGGGTGAATTGGAGCAGCAGGTTTTGGATCTTGAGTTGGAGAATCAGAAACTTCACATTGAAAACAGACTATTGCGTGAAAAGACGCATGGGTTGTTAACCGAAAACGAGGAACTGCGCCAGAGGCTGGGGTTGGACACCCTAGAAGCCAAGGAGAAGGTTCAGGTATTGCAGTCCAGGGTGGATGAGGTCAGTTTGGTGACCGGGTCTTCTGAGTCCGCAGCACTCAGGCTACGTGTGCCTCCGCAGCAGTCTGATATCTTGCTTGGCATTCTGGACATCCTTGACCCAGAAATGTTCCTCAAGTGCAGCGACTTGGAATCCAAGGAGCTGCCGCAGCTGGGAGAGGACGGGCTGGATTCAGTAcctgcctccccctctccatctGTGGGGTCCCCATCAGTTAAGCTGGAAGCCATTAATGAACTGATCCACTTCGACCACATCTATACGAAGCCTTTAGAAGAGGTGGTGTGCGTGGAGCAGAACGAAGAGAGCATCCCCGAAGTGAAGATTGAGGAGGTTTCCTTGGCGGTGGAGGAAGTGGTAGAAGTGGAGCCCGTGGAGGTCAAGGACGAGCCTGAGGAAGTGGAGCTGATCTCGGAGTTGAAGGTCAACGACTTCCTCACCTCGGTGTCTCCCAGCAACCCCGAAAAGTCATCTTGCCTGATAGATGCGTACAGCGACTCCGGATACGAACGATCCCCTTCTCCCTTCAGTAATATGTCCTCCCCTCTGTGCTCAGACAGCCCTTGGGATGATGTCTTTGCCAATGAACTATTTCCCCAACTAATCAGTGTTTGAGACCCTAATGTACAATTTGAATAGTCTTTTATGTGAAGTCTATTTTTGTAAACGATCATAACTACCTATATTTTGCTTTGCTACCACCACCCCATATGATTGGGATTATAGCTGCCCGCTGTAGACGACTGTTCGGATTAGACCAATACTAGCCAAACCATTGCTCTGTGTAATTGCCACAACCTAGTGAATTGGTCTTGGTCGGGTTCTCCTTCTCAGTCGAGTGACCCGCTTTGGGTTCCTATAAATCAGCAATTAAGTGCTGAAAAATGCACCTGCACTTGCTAGTGGTTGTGGGTAGATTCCAAATGTTGGGGATTTTAATATCCAGTATTCTGTAAATCCTGTCCTGTGTGGGGGAAGGGGGACCTTCTCGAGACcattttgtaagaaaaaataactatttatttctatttttttttttttccacgcCATTGAGTAATCAATTTAAACCTTTATTCCAGCATGTATAAGTGCATACATGTCCTTTGTTTTCCTCCTAATTTACGatgtaaatgtttcaattttcaTGATTTAAGGGGTTGCTTTCTTTACGGTATATTTaaagttctgcaaaattaaaacatgtgcaATGAATGATGTCTCTGTGGATTTATGACTTTTCTCTATTCATTCAAGGCAACTGTAGACTGATTACAGAGGAAGGGTAATTAAATGGTTGCCTAAAGATCTACTCGGAATTGTAGTCCTTGGCTGTCAATGTCTGTAATCTACACTGTAGTTTCTTTAGGGACCCCACCCAATTTAACTTCCCCTTCAAGGCTATAAACATGGCTTTCATGGCTGGCATTCCAGGATTGTTGAATTACATTATTCAAGTTCCCTGCTTAACTAGTGAGCCTTCATCTTGTCAGTCTCTAGGTCGTTTTGGTTTTGCTGGAGTGCTATTTAAAGTGTGATGACAAACGGCTTGAAGGATGgcagtatgtgtatataatccATACTAAAACAGTCTTGCACTCAACCTGTGAAAGTAATCtacagttttgcttttgcaggattttttttttttttcttcaaaggaCTATGTGAGATGTCTGTTGAAAGGCTACTCAAGTATAAAATGTAGTGTGATAATTGTTAATGACCAGAAATCTGGAAACTTCCGTAGTGCTGCCCCCTATTTCCATTCAAAGTAGCTCTGTGGTGAGAGCGAATTACTACAGGCCGATGAACT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0035188 hatching biological_process
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K09027 XBP1; X box-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147627 lncRNA upstream 132 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 28546 17224012 ~ 17224609 (+) True G117808
TU147619 lncRNA upstream 91432 17161514 ~ 17161723 (+) True G117805
TU147618 lncRNA upstream 92115 17160762 ~ 17161040 (+) True G117804
TU147612 lncRNA upstream 97331 17153782 ~ 17155824 (+) True G117801
TU147720 lncRNA downstream 327894 17584751 ~ 17585112 (+) True G117887
TU147816 lncRNA downstream 722154 17979011 ~ 17980939 (+) True G117959
TU147850 lncRNA downstream 724353 17981210 ~ 17983017 (+) True AMCG00018681
TU147877 lncRNA downstream 960946 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 1209511 18466368 ~ 18730812 (+) True G118013
AMCG00018647 mRNA upstream 103799 17141389 ~ 17149356 (+) True AMCG00018647
AMCG00018648 mRNA upstream 163133 17071354 ~ 17090022 (+) True AMCG00018648
AMCG00018641 mRNA upstream 818852 16419039 ~ 16434303 (+) True AMCG00018641
AMCG00018636 mRNA upstream 874454 16373896 ~ 16378701 (+) True AMCG00018636
AMCG00018638 mRNA upstream 954444 16296038 ~ 16298711 (+) True AMCG00018638
AMCG00018655 mRNA downstream 33845 17290702 ~ 17296987 (+) True AMCG00018655
AMCG00018659 mRNA downstream 290103 17546960 ~ 17574431 (+) True AMCG00018659
AMCG00018662 mRNA downstream 321078 17577935 ~ 17584564 (+) True AMCG00018662
AMCG00018663 mRNA downstream 328663 17585520 ~ 17593696 (+) True AMCG00018663
AMCG00018669 mRNA downstream 381410 17638267 ~ 17677169 (+) True AMCG00018669
TU147595 other upstream 183485 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2296575 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2465022 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2476661 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 2905414 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 724353 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 724353 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 1462349 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 2191769 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2714282 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060115 False 1728 mRNA 0.49 5 NC_007116.7 15944411 ~ 15948920 (-)
grasscarp (Ctenopharyngodon idella) CI01000071_03062277_03064334.mRNA True 1915 mRNA 0.46 5 CI01000071 3061838 ~ 3064706 (+)