RNA id: AMCG00018659


Basic Information

Item Value
RNA id AMCG00018659
length 3840
RNA type mRNA
GC content 0.46
exon number 21
gene id AMCG00018659
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17546960 ~ 17574431 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcttataccTTTCTCCatcttttcacagtttttcatAAGCACTGTACCTCAGACATGGAGAAGGCGGCCAAAATGAATCCAAACTAGACCTGGAAAGTGACatgatgcacattttaaaggTACTGATTGTCAATGCCAGTTTTGTCAATGAAGGAAAAAACTGATTGGATATCCAAGGTAGTGTTTTGGTCATAATGCCATCGTCGACGCGGAAAGGAGTACCGAAGGACCCCGAGCTTGCTGACCTCTTCTTTAAGGAGGACCCAGAGGAACTCTTCTGTGAATTACATGAAATTGGCCATGGAAGTTTTGGGGCGGTTTACTTTGCCAGAAATTCTCACTCAAATGAGGTGGTCGCCATCAAAAAGATGTCCTACAATGGGAAGCAAACGACAGAGAAATGGCAGGACATCATTAAAGAAGTCAAGTTTTTGGGAGAGCTGCGACACCCAAACACCATCGAATATAAAGGCTGCTACCTGAAAGACAACACTGCCTGGCTGGTTATGGAGTACTGCCTGGGTTCAGCTTCAGATTTGTTAGAGGTTCACAAGAAACCACTTCAAGAAGTTGAAATTGCTGCCATTACACATGGTGCCTTGCAAGGACTGGCTTACCTGCATTCCCATAATATGATTCACAGGGATGTCAAAGCTGGAAATATTCTACTGACGGAGCCTGGCCAGGTCAAACTGGCGGACTTTGGATCTGCTTCTATAGCTTCTCCTGCCAATTCTTTTGTGGGAACACCTTACTGGATGGCCCCAGAAGTAATCCTTGCTATGGATGAAGGGCAGTACGAAGGGAAAGTGGATGTGTGGTCGCTTGGCATCACATGCATAGAGCTGGCCGAGCGCAAGCCTCCACTTTTCAACATGAATGCGATGAGTGCCTTATATCACATAGCCCAGAACGACTCCCCGACACTGCAGTCCAGTGAATGGTCTGATCCCTTCAGAAGTTTTGTTGATTACTGCCTACTGAAAATCCCTCAGGACAGACCGTCATCTGCCGAGTTGTTACGACATGACTTTGTTCGGCGCGATCGGCCTCCCAGGGTGTTGATCGACCTCATCCAGAGAACGAAAGATGCTGTCCGGGAACTTGACAACCTGCAGtacaggaaaatgaaaaagatctTGTATCAAGAGAAGCACAATGGGCCCTTAACGGAGTcccaggaggaagaggagGACAGCGAACAAGCCAGTTGCAAGATGAACAGCCTTGGTAGTAACCACTCCATCCCCAGTACCTCTGTGAGCACAGGAAGTCAAAGCAGCAGCATCAACAGCATGCAGGAAGTTATGGACGAGAGCAGCTCTGACATCGCCATGATGCATGACTATGACAGCACCTTGGAGTCCGAGGCGTCGGCTGTCCCGAAAAAGGATCATGTATTCATAAGGGATGAAGCAGTCCACAGGGATCCCAGGCCTGAGCTACGGCCTACTTCATCTGACAAGAGCCAGGCTCACAACTACAAGAACCGAGAGCGCTTTGCCACAATCAAATCAGCATCTTTGGTTACGCGACAGATCCACGAGCATGAGCAGGAGAACGAGCTGCGGGAACAGATGTCAGGATACAAGCGGATGCGGCGCCAGCACCAGAAGCAGCTGATCGCTCTGGAGAACAAGCTGAAGGCTGAGATGGACGAGCACCGCCTTAAGTTGCAAAAGGAGGTGGAGACTCACGCCAACAATGCGTCCATCGAGCTTGAGAAACTGGCCAAGAAGCATGCCATTTATACAGAGAAAGAGACGAAGACGGCCGCGGCAGATGAGAAGAAGTTCCAGCAACAGATCATGGCTCAGCAGAAGAAGGAGCTCACCAACTTCTTAGATAACCAGAAGAAGCAGTACAAGCTCTGCAAGGAAAAGATTAAAGAGGCATGTACAGAGATGAACGAAGACCACAGCACGCCCAAGAAGGAGAAGCAGGAGCGCCTGTCCAAACACAAGGAGAACATGCAGCACTCGCAGGCCGAAGAGGAGTCTCACCTCCTGAGTCAACAGAGAGTGTTCTACGACCGCAACTGCCGTGCCTTCAAACGCAAGATCATGATAAAGAGGCACGAGTTTGAGCAGGAACAGATACGAGAGGCAAGATGCCCTGGAGCAGTGGAGCTGAATAAGAAGAAGACTCAGAAGGAGATGGAACATGCCATGCTGATCAGACACGACGAGTCGACGCAGGAGCTGGAGTACCGGCAGCTGAAGACGCTGCAGAAGCTGCGCATGGACCTGATCCGGCTGCAGCACCAGACCGAGCTGGAGAACCAGATAGAGTACAACAGTCGGCGCGAGAGAGAGCTGCACAGGAAGCACGTCATGGAGCTCCGGCAGCAGCCCAAGAACCTCAAGGCCATGGAGatgcaaattaaaaagcagtttCAGGACACGTGTAAGGTCCAGACGAAGCAGTACAAAGCACTGAGGAACCACCAGTTAGAGGTGACCCCCAAGTCTGAACACAAAACGATCCTGAAAGCACTGAAGGAAGAACAGACGCGCAAACTTGCCATTCTGGCTGAGCAGTACGAACAAAGTATAAATGAGATGATGGCCTCACAAGCGttGCGCCTGGACGAGGCCCAGGAAGCCGAGTGCCAAGCCTTGAGACACCAGCTCCAGCAGGAAATGGAGCTGCTCAACGCCTATCagagcaaaattaaaatgcaaacagaagCACAGCATGAGCGCGAGATGCAGAAGCTGGAGCAGAAGGTGTCCCTGCGCAGAGCCCATCTTGAACAAAAGATTGAAGAGGAGCTGGCTTCGCTTCAGAAGGAACGCACTGAAAGAATTAAACACCTGCTGGAACGCCAAGAGCGGGAGATCGATACGTTTGACATGGAGAGCGTCCGGCTAGGCTTTGGAAACTTGGGTACATTAGACTATCCTAAGGAGGACTATAGATGAAACCGATTTGCCATAATACCCTGTCCACTTCTCATTATAGATGGGCTCTCCGCTACTGACGTCACCTCCGGACTAGTGCCTGTGCAGTCCTCAAAAATCAGGGCCCCTTGTAATGTTACAAGTAAAATGCTGGATAACTCTTGGTTGTCTTTTAACAAATGTCACAGTATTGATGTTCATGTGCAATGATAACTTTTGgtgaaactgaaaagaaaaaaaaaagtggatgtTGCTTAACGATCATGCATTAGAAATGATTTGTCAGTCtgtgcaaaaaaactaaaaaaaaaaaaaaaaaaagaaaacaagaaaaaaagaaattttCCTGCAGCCTTATCTTATACGCTGCTTCTCTCTTTTGGTATTTATTCATCAGGAAAATTTTATTAAGATTGAGCAATTTGATACGTTTAAATATGAACTCATAATGATGTACATATTGGTAGTTACATGTTACTTCTGGgaaattgtgatttaataaaTGCTGGCTCAAGTAACTCAGCCCAGCATTTAACTGTATCATAATCATTTTCTGCTGTAGCAGATGATGTGAATACCATACATGACTCCTAGCGCCCAGGTAGCACATAGGGTTCGGGATGATCGTGTATTTTGTGTATAGAAGGATTTATGGAGAgcttttacttattttcatattgtattttaactgGTCCTcaaatcaattttttaaaattgttttttttttttttttgttcagtatttGGAGTTTAATCTGTCAATGGGATCTTCTATTGGAATTTTCCATCTAGATCATTATATTGCTTTATCCACACTTTCAAGCTGTGTATTTTCTTACAATAAATCGAATCagtaaaatgctttattattgcatgcactttaattttttttcaggttattaaaaaaaaaacacaaaaaaacggCATGAATCTGTCAg

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04429 TAO; thousand and one amino acid protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147627 lncRNA upstream 293937 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 322351 17224012 ~ 17224609 (+) True G117808
TU147619 lncRNA upstream 385237 17161514 ~ 17161723 (+) True G117805
TU147618 lncRNA upstream 385920 17160762 ~ 17161040 (+) True G117804
TU147612 lncRNA upstream 391136 17153782 ~ 17155824 (+) True G117801
TU147720 lncRNA downstream 10320 17584751 ~ 17585112 (+) True G117887
TU147816 lncRNA downstream 404580 17979011 ~ 17980939 (+) True G117959
TU147850 lncRNA downstream 406779 17981210 ~ 17983017 (+) True AMCG00018681
TU147877 lncRNA downstream 643372 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 891937 18466368 ~ 18730812 (+) True G118013
AMCG00018655 mRNA upstream 249973 17290702 ~ 17296987 (+) True AMCG00018655
AMCG00018654 mRNA upstream 290103 17253155 ~ 17256857 (+) True AMCG00018654
AMCG00018647 mRNA upstream 397604 17141389 ~ 17149356 (+) True AMCG00018647
AMCG00018648 mRNA upstream 456938 17071354 ~ 17090022 (+) True AMCG00018648
AMCG00018641 mRNA upstream 1112657 16419039 ~ 16434303 (+) True AMCG00018641
AMCG00018662 mRNA downstream 3504 17577935 ~ 17584564 (+) True AMCG00018662
AMCG00018663 mRNA downstream 11089 17585520 ~ 17593696 (+) True AMCG00018663
AMCG00018669 mRNA downstream 63836 17638267 ~ 17677169 (+) True AMCG00018669
AMCG00018670 mRNA downstream 130063 17704494 ~ 17728160 (+) True AMCG00018670
AMCG00018671 mRNA downstream 158148 17732579 ~ 17740121 (+) True AMCG00018671
TU147595 other upstream 477290 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2590380 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2758827 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2770466 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 3199219 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 406779 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 406779 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 1144775 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1874195 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2396708 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_03329447_03356262.mRNA True 3692 mRNA 0.47 19 CI01000071 3329447 ~ 3357152 (+)