RNA id: AMCG00018663


Basic Information

Item Value
RNA id AMCG00018663
length 2847
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00018663
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17585520 ~ 17593696 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGTCAGCGGGGAAGCAGGAAGCGGCGCAGCGGCGCAGCCTTGGCCTTGGACAGGGCTTATGTAGAAATACGTATATTTGTGAAGATGTCGGGGTTTATTTCATTATcacggttttgttttttctcccgtGATAACCACTAGAGGAAACACGCAGAAGTAGGAAGTCGGAAGTGTTGTTATTTGCTGGCGGTGTCTGTTTGCCGTTGGATGGAGTCAGGGTCGCAGGTGATTTCACTGCtggggaaaatacatttctgtttattcaAAAAACAACAGTCAGTCACATAGCTGAATACAAACGCACAGAGCAAGGCTTTCTTGACTTCAGCCATGCAGATGGACGTGAACCCCTTTGAGTACAAACCCAGGAGCAGAGACTGCAGAGAAAAGGCTACTTTGATTGGGGAGCTGAAGCCAGTTCACCCTCAGCCGCTGGACGGCCGGGCGGGCTGTGAGACCTGGAGTGTGGAGTTCTCTCCTGACGGGTCCTACTTCGCGTGGTCACTGGGCCACGGGATCGTGAAACTGCTGCTGGACCACTGGAGCTCAGCATGCaagaattacaattataatacagCCAGGaggaaaaacatgaagaaagagAAGACTTTGGACTGTGGGCAGACAGTGTGGAGTTTGGCTTTTGGACCACGTCTGTCTAAACACGCAGAAACTCAGATGCACGACTCAAAACCTGGACCGTCTACGGATGTTTTGTCAAGCTTACTTCTTGCCACAGGTCTAAACAATGGGAATATTAAAGTCTGGGAGGTCAGAACAGGTCATATTCTCTTTAATCTCACCGGACATCAGGACGTGGTCAGGGATTTGACCTTTGCACCCAACGGCGGATTAAACCTGGTTTCAGGTTCCCGTGATAAGACTCTCCGGATCTGGGACTTAACCAATGACCgtaaaaaagcacatgtattgACTGGCCACATAAACTGGGTCTACAGTTGCTGTGTTTCGCCCGACTGCAGCTTGATTGCTTCCGTTTGTGGACACAATCTAGTTTATTTATGGAGCATGCGGTCGTACACCTTCATCAAGAACCTGGAAGGCAGCCGCTACTTCCTGGTTTCCTGTGACTTTTCACCTGACGGGGCTCTGCTGATCACGGCTGCCTTCTCCAAGCAGATCATCCTGTGGGACCCGTACACCGGAGAGCCGCTTATGAAGCTGAGTCACTGCTTCCCTCCTCCATATTTTCCATCGGCCCCTGACATCTCAGTGAGAGCAGTACGCTTCTCCCCTGAAGGGTTATATTTTGCATCGGTTGCTGAGGACAGAGCTATGAGAATCTGGGCACTTGGGCTTGATGATCCAGTCGTTGACACAGAGGCTCCTGTTTCCAACGGGCTGTGCTGTGCATTCCACCCACAAGGGGGCATCGTCGCGACAGGGACGAGGGACGGGTACGTGCAGTTCTGGAGCACGCCGAGGATTGTGCCCAGCCTACGCCACCTGAGCCGCTCCTCCCTGCGCCACTCTGTGCCCACACACCAGGTAATGGCGCTGCCCATCCCCAACAAAATGAAGGACTTCCTAACGTACGGGACACTTAAACAATACCATGAAAGAACCGATCTGCACCACATGCAGGAAGTCCTCTCTCTGAACTAGAAGCACTGGAGCTGAGATTTTAAAAGACAGCTTTTCTAGGCTCGTATGCATGTACGAAACcgttacaataaatacataataatgaatgtttattacaggaATAATTTCTGCTACTGATAAAGTTTTTGTGAAATGTACTTGTTGATTACGTGAGATTATATAaagctttattaatttaaaatttatatttttataaattaatatatgccaaatttaattttttattgtatttttattttatggtcaACCTGCATTAAGAGCAGAAAAAGACATTCCGAAATGTTTTGCTGCCAGATAGGTTTAGaacttgatttgttttgtttttatacagatTTACAAACCCTAAAAACAAGCGACAGATAACTGAAGTTCACAAACATCAGATTTTATAGTCATATTTCTAAACTCAAACTGGAGATTTCCATAACATTCCAATAATATAATCATTACTTTACCGGTATAAACTCCTCACCTATACAAATAACATTGCTAAAGAccaaaccacattttatttattaaggatAGTTTTAGCCGTTGTAATGCTTCTGAAGTCTAAAACGAGAACATCTTAGAATAAGATGGAAGGACTGGGTGGtatttaaacctttattttcaaaggttgtacatgaacactttttttttttttttggtagtaaatatatttgtatatgtctTAGACAGTATGGTGTATACGTTTCCTTTGTGTACATTCTCAGTTCCACAGTACATCACTTCATATTTCATAACCATTTCATGCCTCAAACAGAATAACTGGGACGTAGGGCACACCTGTGATTTGTGAAACGTTTTTAACTTAGTGCTCAAAATTACttgatcatttttgtttttgtgtaatgcTGTGTAAACTGGAAATCGCCCcagataagggcatctgccaataaataaataattattaaagttaattttaGACAATATTAGGCTtaactgtactgttttttttgtgatttgaaATGCTCTACTGTTGAGCAGCTGTTCACAATTTGGCGACCACATTTCAGGCAGATTTCCAAATTAATTCTTCTGTGCTTTTAGACAGTACATGTGAATAGAAGTGCTAAACTCTACAGTATTGTCTTCCAGCCCCTGATTATATCACTTTATTGGATtactaaagccaaataaaatatttcaaacaattgTTGTGCATCAATTCTTTTAAatcatatacagttaggtccataaatatttggacagtgac

Function

GO: NA

KEGG:

id description
K10342 WSB2; WD repeat and SOCS box-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147720 lncRNA upstream 408 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 332497 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 360911 17224012 ~ 17224609 (+) True G117808
TU147619 lncRNA upstream 423797 17161514 ~ 17161723 (+) True G117805
TU147618 lncRNA upstream 424480 17160762 ~ 17161040 (+) True G117804
TU147816 lncRNA downstream 385315 17979011 ~ 17980939 (+) True G117959
TU147850 lncRNA downstream 387514 17981210 ~ 17983017 (+) True AMCG00018681
TU147877 lncRNA downstream 624107 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 872672 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA downstream 1080578 18674274 ~ 18676226 (+) True G118043
AMCG00018662 mRNA upstream 956 17577935 ~ 17584564 (+) True AMCG00018662
AMCG00018659 mRNA upstream 11089 17546960 ~ 17574431 (+) True AMCG00018659
AMCG00018655 mRNA upstream 288533 17290702 ~ 17296987 (+) True AMCG00018655
AMCG00018654 mRNA upstream 328663 17253155 ~ 17256857 (+) True AMCG00018654
AMCG00018647 mRNA upstream 436164 17141389 ~ 17149356 (+) True AMCG00018647
AMCG00018669 mRNA downstream 44571 17638267 ~ 17677169 (+) True AMCG00018669
AMCG00018670 mRNA downstream 110798 17704494 ~ 17728160 (+) True AMCG00018670
AMCG00018671 mRNA downstream 138883 17732579 ~ 17740121 (+) True AMCG00018671
AMCG00018672 mRNA downstream 149256 17742952 ~ 17749119 (+) True AMCG00018672
AMCG00018667 mRNA downstream 158627 17752323 ~ 17770536 (+) True AMCG00018667
TU147595 other upstream 515850 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2628940 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2797387 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2809026 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 3237779 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 387514 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 387514 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 1125510 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1854930 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2377443 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile