RNA id: AMCG00018667


Basic Information

Item Value
RNA id AMCG00018667
length 2707
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00018667
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17752323 ~ 17770536 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGGGTTGCGCCGCCGCTCGTTTTGGAGCTGGTGATGTGAGGCAGAGCAGGCGCCGGGTCAGTGGGGAGCGGGCCTGCACAGCGACGCGTCCGGCCTGGAGCAAGGGTTCACTACCGGGGCTGAAGAAAATGGATCTGCACATCTTAGATCATAGGCTGAAAGTGACTAGCATCTGTAAAGACGGGTTGGTGAATTTCACGCACCCATTGATCAAACTCATTTTTCTCCGGAACAGGACGAGGTGCAAATTCTTTAGCCTGACTGAGACCCCTGAGAATTATACTGTGGTACTTGATGAGGAGGGATTCAAAGTTGAAGGCTCCACCTGGCTGCCTCTCAATGTGGTCTCCAACGGCAATGCCTCCAGCAGCTCCCAGGCCGTGGGGGTCACCAAGATCGCCAAGTCCGTGATCGCCCCGCTTGCTGAGCAGCACGTGTCTGTCTTCATGCTGTCTACCTACCAGACAGACTTCATCCTGGTGCGAGAGAAGGATCTACCTGTTGTCATCCACACCCTGGAGGAAGAGTTCAACATCTACAGAGAAGAAGGCGGGGAGTCTGTCCCGGTGCACGGCAAAGATGTACGCAATGGATTTCACAAGAATGGCAGGGAAGCCATGAAACCCATTGTGCATCCAGTGCTGAGCCCCCAGAACCAGTTCTGTGTGATGAGTTTAGACCCTGAGACTCTGCCGGCCATCGCAACCACTCTCATCGATGTGCTCTTCTACTCCAACAGtGCAAAAGATGGTGCCCATCCCACCCAGGCCCTGGACTGTATCAagttcttctccttctccctgaTTGAGGGCTACATCTCCCTCGTCATGGACACCGAAACGCAGAGACAGTTTCCTAGCAACCTGCTCTTCACCAGTTCCTCGGGTGAATTGTGGAGAATGGTGCGCATTGGGGGACAGCCGCTGGGATTCGATGAATGTGGAATCGTTGCTCAGATCTCCCAGCCGTTAGCGGATGCTGACATTTCTGCCTATTACATCAGCACTTTCAGCTTTGATCATGCTCTGGTGCCTGAAGAAGACATCAGCAGTGTGATCGACATGCTACAACAGCAGCGGACGGAGCCTTCGCACTGATTGTGAATGCACGCACCCAGCCCCGGGCCTCTTTGCCTAGATGGGGGATAAAAAACAGTAGAGAGAGACTCCTTCAGTGTTTGGAATCACACTGAAAACCAAACTCAGCAGTATTATCATGAACCAGAAGAAGCCTTACGTGACGTGGTCTTGAGGTGGTCAGTTACTGAATACAAATATGCAGAAAAGGATTCCTTATTTTACACGCTTCAGCCTGACACTGAAGCTACAGGCAGTGGCAGGTGGCatggttggttttgttttcaaatgcagtgCACTTATTTTTCACAGCCGAGTCTTCCGGTGTGCTCATCCCCGAGTTGTCAGTTTTCTTCTCTCATGGGGTACTTTTCTGAATCTAGTTTTAGGAATGCATAGCCGATTACTGTGTGACAGGAACGGGACAGtgttaaagaaatgaaaaggagGCACTTGGAATGTGGAAACTTGAAGGAGTTGGGAGgttttggctttgttttgtattcgtttttcagtgtttctttttgttcctTTCGGAAGTACCACCTTGATGCACGTGATTCACCAGGGTTCCCCTGCATCTGCTTCCAACAAGTCACACAATAGTACTGTACTATCCTGTAAAGCTATGCAGGAATGCTTTTCAAtgcataaatattacaaaattgaacaaaaactaaatgtgtattattggATGGGTTTCTGgccctttcattttcatttaagtgAAAGTGTTGATATTCTGGATAGCAGCAGCTAGCCACGCAGCCTATAAAGAGGACTGTGAAGGTGCGAGGATTACGTGATCATTCCAGCATATCCGTCAgggagttttcatttttatttaaaaaaatttttAAAGCTTATCAAAGAATGACAATATAATCTCATTCTTGTTTTCCAGTTAAGTCAGAGAGTGACCATTAATCTATGGTCTTAACAGAGACTTGactcattgtttttattcagacTATTTGTAGAGTAAGCTATTTTCTGTGAGTCTACGTCCGTTCAAGTTCTTCACCGATTCATCTGAAATTCTTCAGAATTGTAGTGGTCTGTTTAGTGAGTTTTGCTCTTTGTTCCACCACACCCCTCTCATGTCTGAACATCGAAGCATGCTTCTCAACCATGCAAAATGGATCAATCCAGTGCAAACTGCATTGTGTTCTTATTGGAAGAGTTGTTCTACTTGCTATTTAAGTTTTACAGTAACttcaaaagcacaaaacaaatgtggaagGAGAAATGATCCCTTTCAAATGGAAGATAACTTTATTTCGGTGGTTCAGGTAATATTCTGGCCTTTCACTGCAACACTAATCCATTTATACTACATTACTTTAGGATTATTCCCAGGAAGAAGAGATCTTAATGTCACCCCATGATATAAGCTGTAGACTATTAATTTCAAGGGTTAATTTCAGTTTGTACTGCACCTTGAGACACTACTGatttgtggcttttttttttctctcctcgtGCATAGCAGTACAatgactgtttttgtttcactttggaAGATTTAATACTTCTTTCTTCCCAgtataataacattttgtacaatagttttatgtaaaacatttgtaaatgagCTGctttattcaataaaaaatgattgaattTCAA

Function

GO: NA

KEGG:

id description
K23080 CASTOR1; cytosolic arginine sensor for mTORC1 subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147720 lncRNA upstream 167211 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 499300 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 527714 17224012 ~ 17224609 (+) True G117808
TU147619 lncRNA upstream 590600 17161514 ~ 17161723 (+) True G117805
TU147618 lncRNA upstream 591283 17160762 ~ 17161040 (+) True G117804
TU147816 lncRNA downstream 208475 17979011 ~ 17980939 (+) True G117959
TU147850 lncRNA downstream 210674 17981210 ~ 17983017 (+) True AMCG00018681
TU147877 lncRNA downstream 447267 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 695832 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA downstream 903738 18674274 ~ 18676226 (+) True G118043
AMCG00018672 mRNA upstream 3204 17742952 ~ 17749119 (+) True AMCG00018672
AMCG00018671 mRNA upstream 12202 17732579 ~ 17740121 (+) True AMCG00018671
AMCG00018670 mRNA upstream 24163 17704494 ~ 17728160 (+) True AMCG00018670
AMCG00018669 mRNA upstream 75154 17638267 ~ 17677169 (+) True AMCG00018669
AMCG00018663 mRNA upstream 158627 17585520 ~ 17593696 (+) True AMCG00018663
AMCG00018665 mRNA downstream 9161 17779697 ~ 17782700 (+) True AMCG00018665
AMCG00018666 mRNA downstream 16176 17786712 ~ 17789440 (+) True AMCG00018666
AMCG00018673 mRNA downstream 27417 17797953 ~ 17803948 (+) True AMCG00018673
AMCG00018668 mRNA downstream 36471 17807007 ~ 17823600 (+) True AMCG00018668
AMCG00018679 mRNA downstream 70216 17840752 ~ 17866985 (+) True AMCG00018679
TU147595 other upstream 682653 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2795743 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2964190 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2975829 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 3404582 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 210674 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 210674 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 948670 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1678090 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2200603 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile