RNA id: AMCG00018671


Basic Information

Item Value
RNA id AMCG00018671
length 2524
RNA type mRNA
GC content 0.42
exon number 13
gene id AMCG00018671
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17732579 ~ 17740121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATGTCTCAGCTGCAGCTAGTGCAGTGATTTGTTTACCAGCCCTTAGCTTTTAGGGTTTACTCTTTGCTTACGTGATATTCTTAACTTTGTGTTCACAAGCTAATGGAACACAGTTTTGATGGTATCTAAGTAGTATCCTGTttgagtgtctttgtgtgtgtgtgtgtttgtaggagGTTGGAAGTATCTATAACTTTTTTGGGACCATGGTTGTTGGTAAAAAGCTGGTGAAAGAGTCCGTGTTGCCCTCAGTTCTAGAGGATAATGATGCTGAACTGGAAAGTGAATCTAATGGAGAGAGTGACAATCTGAGAGGAATAGGAAGCAGACCGACCAGCATACCACTTAAAGCCTTCAGCCGAGGTAGTATTGACAACAAGACTGTCCCAAGATCAGGGAGAAGCCAGTCTCCAGCACAGAGCAGATCTCCGGGTTTGGGAGTGGATGAACAGGAAGATGAGCCCACAGAACAAGTTGACCTCCTGCAGAGTCAGACAAGCACCACCTTGGACAAGGAAGCAGATAATGCGGAGGAAGAATGGGACACAGATTTAGAATTAGAAGATATGAGGGAAACTTATGACCCTACTGGACAGACACGGTATAAGGCTGCCTGCAAGATGTTTGGCGTGGTACCAGTTTCATATTTCCTGCGACATTTGCATGACACTGAGCTAATCATGATGCATCACGGGCTCGGACCCCAGGGTGCCAAAGCTCTTGCTGTTCCCTTGGTAACCAATACATCAATCCTCAAGATTAATCTGAGGGATAATTGGATTGAGGAGCTAGGTGGAGCTGCGATAGCAGAGATGCTGACAGAAAACTGCTATATCACAGATATTGATTTGTCAGAGAACAAGCTGGGAGGAAAAGGAGCCCAAGCCATTGGCAACATGCTCCTGGAGAACACCACTTTGGTCAGTATCAACCTCTCTGGGAACGGTTTTGATGACCATGCGGCAAAGCACTTGGCTGACGCTTTGGTGAGCAACCAGAAAGTGGAAGTCTTGGATCTGAGTCACAATCGGATGGGAGACGGAGCAGGAGAGATGTTAGGCAACGCGATTGCTGAAAACACAGGAATGAAGACTTTTAACCTGAGCTGGAACTCTTTGCGGGGAAGAGGATCGATCACACTGGCAAGAGGTTTAGGGGCCAACATTTTCCTTCGTGTGATAGACTTGTCTTACAATGGATTTGGGAAGGATGGAGCTGTGGCTCTTGGGGAAGCTCTTAAAGTGAACAACGTGCTTGAGGAACTGAACATTGGtaacTGCCGAATACCCCCTGAAGGAGCGGTCCGGTTTGCCATGGgcctcaaagaaaacaaaacactgaaaacactcATTATGTCGCGAAACCCGATGCAGAGCGCTGGCTGTTATGGAATACTGAAATCAATGCAAGGAAATCCAGAATCTGCCATTGAGTCCCTGGACTTCTCTGACATCACTGTAAACAAGGATTTTGATGACCTTTACTCCGCAATCAAAGAAATGTTTCCCAATCTTCAGGTGAAACACGGGGGAAATGCAGACATGTTCAGGAAAACAAAGGCCAAAACAGACCCCTTGAGCAAACTGAAAGAGCACATGAACAAGAGCAGCTTGAAGTTGGAGGATTTCTTTGAGACTGTGGATGAGGATAAAAGTGCTCTTGTCACCCGGGCCGAGTTTCAACAGGGACTCATGGCTATGGGGCTCCCTTTATCCCAGGATGAACTGCAGCTGCTGATGGACGACTTTGATAAGGACAATAACGGCGAGATTGATTTCAGaGAATTTAATACATTACTGATGAAGGTATAATGCAGTGTATCTATCTGGCATTGGGGACATCTTTGAAGAACGCTTGGACATTTAGAGTGGAAACTACAAACTCCTGGATACATGCTTTCCTTACCTGGCTCCCATTCAGTCTCTTTCCACACTCAGTGTTTCGCCGATATGACAAAGACACACTGGCAGCTGGCAAGAATAGACACGAGGGTGGTGCAGAAAATATTCTGCAGCTGTGATAAACTTATTTTGCTAtgttaatttttgttttctatgatGAAATGCCAGCATTCTTCCATgtttatacaaaatgaatgaaagtaGGTTCTATAAAAGTTGATCAAAATATAGAGTTTATTGTAATCTGAATATTGAactgcacattttttaaacacctCTGTGTATTATGGGCAATTTTTAGATTGGAATTCCTTCTGCTCCTATTTAGATTCGGACATGAaagttttaaaagcaaaactagaatataataatttctGCATGTGACATTActttttgcatgatatattactggatatgtattatttttatggtcATATGCAGGTCAATGCCAATCAAagtaataatagtataatttagGATATAATATGCATCAGTAATAGTATATAAAAGTCAGTTGGTTAGTATCTtagtataatagcaggtatGTTCATGATGGTATGTtaatataagtattattattattattattattattatcagtcaAACAGTGGCAATAGCCCC

Function

GO:

id name namespace
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147720 lncRNA upstream 147467 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 479556 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 507970 17224012 ~ 17224609 (+) True G117808
TU147619 lncRNA upstream 570856 17161514 ~ 17161723 (+) True G117805
TU147618 lncRNA upstream 571539 17160762 ~ 17161040 (+) True G117804
TU147816 lncRNA downstream 238890 17979011 ~ 17980939 (+) True G117959
TU147850 lncRNA downstream 241089 17981210 ~ 17983017 (+) True AMCG00018681
TU147877 lncRNA downstream 477682 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 726247 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA downstream 934153 18674274 ~ 18676226 (+) True G118043
AMCG00018670 mRNA upstream 4419 17704494 ~ 17728160 (+) True AMCG00018670
AMCG00018669 mRNA upstream 55410 17638267 ~ 17677169 (+) True AMCG00018669
AMCG00018663 mRNA upstream 138883 17585520 ~ 17593696 (+) True AMCG00018663
AMCG00018662 mRNA upstream 148015 17577935 ~ 17584564 (+) True AMCG00018662
AMCG00018659 mRNA upstream 158148 17546960 ~ 17574431 (+) True AMCG00018659
AMCG00018672 mRNA downstream 2831 17742952 ~ 17749119 (+) True AMCG00018672
AMCG00018667 mRNA downstream 12202 17752323 ~ 17770536 (+) True AMCG00018667
AMCG00018665 mRNA downstream 39576 17779697 ~ 17782700 (+) True AMCG00018665
AMCG00018666 mRNA downstream 46591 17786712 ~ 17789440 (+) True AMCG00018666
AMCG00018673 mRNA downstream 57832 17797953 ~ 17803948 (+) True AMCG00018673
TU147595 other upstream 662909 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2775999 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2944446 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2956085 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 3384838 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 241089 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 241089 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 979085 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1708505 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2231018 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile