RNA id: AMCG00018686


Basic Information

Item Value
RNA id AMCG00018686
length 1497
RNA type mRNA
GC content 0.50
exon number 1
gene id AMCG00018686
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18138045 ~ 18139541 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTAGGCAGGATTGTTGGTGTGGTTTTAGCACTGCGGTTCAACTCTGATCTAgtcttctctttcctttcttttccaggAAGCAGACTCTTATTCTTGGTGCTATGGCTGAACTCCATACCCCAGGTTGAGTGCTGTCCaggggtctgtgtgtgttacagtgagCCCAGGACCACGGTGGCATGCCAACAGCAGGGACTGTCCTCAATCCCAACAGAGATACCCATTCGCAGCCAACGGATATTCCTCCAGAATAACAAGTTGACGGTGGTGAAGTCGACCAGCTTCAGCTCTTGCCACAACCTGACTGTGCTTTGGCTCTACTCCAACAACATCAGCCACATTGAGGCTGGCGCATTTTACGGGCTGGAGAGGCTAGAGCAGCTGGACATTGGAGACAACAGCAACATGAGGATTATCAGCCCCACTGCCTTCCGAGGCCTGTCAAGACTGCACACCTTGCACTTGCATAGGTGCGGCTTGTCTGATTTGCCCGTTGGGGTTTTCCGAGGACTGTTTTCCCTACAATACCTGTATCTCCAGGACAACAACTTGTTAACTCTGCATGATGACACTTTCCTAGACTTGGCCAACCTGACCTATCTCTTTCTCCACAGCAACAAAATCAAAACGGTGTCGGAGAACATGTTGCGTGGTATGATCAATCTGGACCGCCTACTGTTACATCAGAACCGGGTGTCCTTTGTGCACCGGAGGGCTTTCCACGACTTGGGGAAGTTGACAACCTTTTACTTGTTCAATAACAATTTGACTGTGCTCACGGGGGAAACTATGGACCCCTTGGTGTCACTACAGTACCTCCGTCTCAACGGGAACCAATGGATCTGTGACTGCAGGGCCCGGTCTTTATGGGATTGGTTTAAGCGATTTAAAGGCTCAAGCTCTGAGCTGGAGTGCCATGTTCCATCGAATCTGGCTGGCAAAGATCTCAAGAGGTTGAAGGCCAGTGACCTTGAAGGCTGCACAGATTATTCGCAGCAAGTCCGAACCAGCATCTTTAGCACCAAGACCCGATCGGGAAAGCTGCCCACGACCGAGACACCGTTAACAGATGGCACTCCTAGGTGCTGCCAGCAAGAGAGTGACAAATCCTCCATTATATCCAGCAAGGGCCTCCCAGATCCCTCTTCTTACAACAGTCGACAGATCACAAACAACCCACTCAAGGACAAAGAAAACATCTCCAAGACCAAGTTCCTGGAAGTAGACCCCACCAAGAATGGCACTCATAacatacagagacagaaagacgaCCCTGCTAGAACCTTCTCTGATACTCTGGACGCGCCTTTGGGGAAATTGAAACCAGACTTCATTGACAATATGGAACCTTCAACAGCGCCCtcaaagaagagaaagaagtGCTCAAAAAAGCCCAAACCAGATGCCCAGTGTCTCAAAGGCAATGGTTCCACATCTCGGGCACTGAACCTTCTCTTCCTGCCCGCTATCTGGTTCTCTTTAACGATCTGCTAG

Function

GO:

id name namespace
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0007411 axon guidance biological_process

KEGG:

id description
K16659 RTN4R, NGR; reticulon-4 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147850 lncRNA upstream 155028 17981210 ~ 17983017 (+) True AMCG00018681
TU147816 lncRNA upstream 157106 17979011 ~ 17980939 (+) True G117959
TU147720 lncRNA upstream 552933 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 885022 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 913436 17224012 ~ 17224609 (+) True G117808
TU147877 lncRNA downstream 78262 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 326827 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA downstream 534733 18674274 ~ 18676226 (+) True G118043
TU148025 lncRNA downstream 688056 18827597 ~ 18832243 (+) True AMCG00018712
TU148059 lncRNA downstream 766865 18906406 ~ 18908956 (+) False AMCG00018717
AMCG00018685 mRNA upstream 102417 18023027 ~ 18035628 (+) True AMCG00018685
AMCG00018681 mRNA upstream 155986 17981140 ~ 17982059 (+) False AMCG00018681
AMCG00018678 mRNA upstream 178520 17933745 ~ 17959525 (+) True AMCG00018678
AMCG00018679 mRNA upstream 271060 17840752 ~ 17866985 (+) True AMCG00018679
AMCG00018668 mRNA upstream 314445 17807007 ~ 17823600 (+) True AMCG00018668
AMCG00018698 mRNA downstream 206416 18345957 ~ 18437784 (+) True AMCG00018698
AMCG00018697 mRNA downstream 388202 18527743 ~ 18528121 (+) True AMCG00018697
AMCG00018693 mRNA downstream 422992 18562533 ~ 18571339 (+) True AMCG00018693
AMCG00018691 mRNA downstream 451425 18590966 ~ 18605862 (+) True AMCG00018691
AMCG00018692 mRNA downstream 506978 18646519 ~ 18659398 (+) True AMCG00018692
TU147849 other upstream 155742 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 155931 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 1068375 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 3181465 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 3349912 14786623 ~ 14788133 (+) True G117383
TU147936 other downstream 579665 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1309085 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 1831598 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 2119836 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 2234455 20373996 ~ 20374812 (+) False AMCG00018781

Expression Profile