RNA id: TU147958


Basic Information

Item Value
RNA id TU147958
length 4636
lncRNA type sense_over
GC content 0.45
exon number 3
gene id AMCG00018687
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18538418 ~ 18547368 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGTGTGTGCAGCAGCTGGACCTGTGGAGCCTGGTATCCATCACCATGGATGGACCCAGTGTTAACTGGAAAGGTTCTGCAGCAAGAGGATGCTGAGCAGGGTGGTGGTGCTCAGCTGGTGGTTGCAGGGAGCTGCGGCCTCCACAGCCTacataatgcttttaaatgtgccTTCTCCATGTGGTGGTTAGAGAAGGTTCTGAGGGCCATGCAGTCTATTCCACAACACACCAGCAAGGAGGGAGGACTTCACTGCTCTCAACAAATCCTCAGTCTTCCCATTACCTTTCTGTGGCCACCGGTGGATCATAAACTATAGAAGCTATAGAAGTACGGCCAACACTGGTGAAGTATGTGGATATGGTGAGAACCAAGAAGCTCCCAAACCCCTGAACAGGGTCATTTGACACCACTGAAACAGCCCAGCATGATCAGCTCATCTTGGCCAAACTGCAGTTCTTCATGGCTGTCTCCAGGACTTCACTCCCTTTTTGACCAGTAATGCCATTCCTCTGCAGGGTATTTCAAGAGTTTGCATTTTATCAGAGGGAGCTCTTCCAGGACATCGCTCCTCTGCAGCTAATCAGACTAGATGTCACTGTCCAAAAGAACCGGGTCTGCCTGAAGGAAGTTGACAGGCTGAGGTGCAGCGTCAATCCTCAAGGTGATGGGaagttcccaaattgttgggTAATCCCATCACTTGAGGCCAAAAGTGAGCACTTCCTCTCCTTCCGACCCACCGAGACAAGGCTGGATATCTTCCTGCATAGCTTCCTCAGCCAACCCTAGCCAGAACTCTGAGATTTCTGCAAGAAGCTCCTTCTCTCATGGGTAGGCAACCATCGAGAGGCTTCTCCATCAACAAGGAGGTGGAGACCTGTAACATGCAGGAGAGCACAGTCATCGCCCAGAGACTGGTGTGTGACTCACAGAGGGAGAGTGAGACCGCTGTGCAAGAGCAGAAGAGAAGCTTCAGAGGACTACTTAGGTGAATtgaaaaagaagaggaagacTGCTGGAGGTGTCTGACAGCTTGGAAAGGGATGCGGACAAGTTTGCTGAGCAAGCAGAGAACAAGTCAGGCACCTTGATGCCTCCGCTCCTCACAAAGTCCAACACCCTCAGCAAGAGACATAGTGAGAAAAGGAGTGAGCTAGAACATGTCAAGGCAGAGTTGGAGACTAAAGGCTACAGAACTGAAACGCATGCCATGACCAGTGTCTGTTGGAGCAGACACCCATCTCTCCAGGAGTTGAGACCTGCCTGCCAAAACAAAACGCTGACTGCAGAAAGTGTTGTTTCTTTAGAAATCTGTAACTGGCTTTTGAAAAAGGATTATGGTTTAAACAATGTAAGCATTTTAATTCAACGAGGTTTGCTTAGGCATTTGTTACGTTATATCCGACACGTACTATATAATATTTAGGCtatttatgattttcttttacaGGGGAATCCAAGTGCTACACCCTTCAGGATTAGGAAATTGCTCCATTTTAGTCTTTGACACCCCTGTCTGCCTCGCAGTGGAAGTGCCATTTTGCTTGGGTGACCTCCGAGTCGGGAAATTGTTCTAGTGCAGCACCATGCTGGAGCCAGAGAGTCTGTTTGGAAACCCCTCCATCCTTGGGGAGTTTCTTAATGTGTGGCATCGAGGAAGAGGGCCAATTCCTTCAGCGAGGCATCAGTTGGCTGAGTGTAGAGTGAGTTTGCTGTACAATAACCGTTCGTACAGGGGGGCCGTGTGACCTGATGGATGGGTGATAGCCCGACTGGCTGTGCTCCTGACGTGCTTTGTGTCGAGACACTAGTGGGCAGTGTGGCCCTCTGGTCTTGAAGCCTCTGACAATGGGGGGCCTATTTGGCAGAATTTGTATGTTCTTCTCCAGCTTTGAGGCGCCATCTCCTTTTTAACAAGCAAATTATCTTGGCTAGCTTGTGGttagagggagaggagagacaaaAAGTGCACCAGTGCAGGATTTAATTAATCCTGTTGCGTTAAGGGAGGTTTCAGAAGGTCGTTTAAATTATGCATCACTGATTGAAACTTATTTTATGGATGCATGTGCAGGGAATCTTTAATTTGTTGTCATGAAAAGATGTGCAAGATGGTTTATAAATTTTGCTAATCATAACCAGGAATGAAAtgactgtatattaattatgcTTAAGACCTTGTCATTTCCCTGCCGGGCAGCTACCTGAAAGGTTGAAAAGTTTAGCATATCTGAAGTTTAGGGTGAAGTGGTTGGTACAATTTGAGCTTAAATGTAGCGCGTgggtataataaataaaatctataataataatgtagttgaggaggtaaagaaacaggcgtAGCTTGTGAGACGCACATGAGTTCAAGTAACGGGAAAGGCTGAGTACTTTGTCGTGATCGTGTCATGTGAGTTCAGCTTTGCGCGTTGCAGCAAACTGTTTTACATGGGTGTAGCTGCTGCCTCCGTCATCtctcaaggttttgttttagtagccTTGCCCCAGGTAAACCCAAATAATCGacgattaattacattttaggattttagtagattttaataattgaCGTTATCGCTAAGTTGTTGCAGCCCCGCTGTCGCTGAGTACTATTGTatctgtaagtgtgttttaatgatgagGCAGCTAATGCCACCTAGTAGTCGATTGGATATTGTGCCATATGAACCGCTGCAACACTGGGTCATGAACGTAATTCGTGGGACTGGTAGTTTGTTGCCTTCTCGGTTAATTGGGACAATCCACAaccgaactacatttcccacattttctACCATAATAATGATTAGTGTAAAATATCGTTATCATAATCATGtcaatgtagtatttccttATAGAGTTCAAATATTGTATTCGCACTGTGcacccaaattgtatttcacattcgcACAACATGCGCAAATGCGCGTAAAACACttgcactgtagagccctgcAAGGTGTCTATTACTTGGGTTTTAACTTGggtttttgtgtttgaaattTTCTAATCTGTCCTGTAGACTCAAGAGAATTTTAGCACTTAGTGAGTATTCAGTTAAAGCCACTTATTCCACAAGAAGGAACTAAACCTGCTATACGTTTGAAGGCGGCAATACCTAACCTTGCTGTACTGCTCCTgtctactgctgctgctgctttacTGCTCTTCCGACGGAAGGTTTGACTCTATTCTTATTGTATGTGGTATGAATTAGACCCTGTTTCAGGCTTAATGGGATGAATCGTGGGGAACGCTATACTGCCTGTTTACTGGGAATCGGACTTGAtacttgttttttctctttagtttctttttcgaatgtgttttttgttttcgaACTTTATGCTTATTTTGAGTGTGTAATAGCATTCGGTTTCGTTACTCCTAATGGACCTAGAATGTTAGACACGGACAACCCAAGAAATGAAACGTGTGATAAGTGTCAGCCCAGCTCTCTCGGGTCGCGTGGTCAGACTCTCTGGAAGATTAAAGAACGAGTCTGCCATGGAGACGATGCAGATACTTCGCAACGTCCTTCACATTGGAGCCTGCAAACATCACAGCGGTTGGTCAACACAGAGCCACAGAGGTGTATTATCTCATTGTATCATGCACCTTAGATCCATTCTAACAGTCTTAGAATTAATTTCAGTGGTGCTTGTCTGGTTGTGCTGTGCATTGGTTTTCGTCTCATTagatatctgtgtgtgtataagatGCCTCGATCTTCAGCGGTTTCTTGGCATTTACAGACGTATCCATGTTTGTGGTTTCCACCTGTGGACGGACGCACACAGACAAACTTCAGATGCCTGAAAAAATACAGGCAGGATGGAAATGGACTTAAATGTAACCAGTACTGCAGACAAGCTCCAAATGAGTCTGTATCCTGTAGTGTGAGATGTATGAGGCTGTTTAGGGGGTCGGGTTTCCCTGCTGGCCTGCCTCGTACTCTCTGGCCTCCCTTCAGGTGTTCTCGCTTTGGGAACTTCAGTCTTGATGATGGTGTCTCGGTGGCTTGGCTTTTGGTGGGTTCTATTGTCTGTGTGGCGTGGCTTGGCTTTGCTGGCACGGGGGCAGTGTAATCTGCGCCTGGCGCACAGCCGCTGCCCATAGCGTCCTTCACATCGGAGCCTGCAAACAGGCTTACTGGCACTGTCATTGTGCCTTCTCTGGAGCAACGCCAGGACAGTAAGTGCTTCAGGCACCACTAAGGTCAAGACCAACCTCAATCTCGGAACCCAGTTCTGTGCCAAAGGAGATTAGATAGTCAGTAGGTTACTTCAAATTGAAACCGGAGCAACTGACAATTCTTTCAAAGTTTTAAATGTCCTGGATTCTAGCCTTACACCGTTTACActcttaaaacaattaaaatattaaaagcagaggcatgtttttatgtgatcaattttaattatattcgTAAACCCTACAAGCATAATAGTAATCCTAGTATAGATGCTTCCCGACTTACTTAGCGATCCTGAACTGGGTGACTGAGAAGTCTGTGAGTTAACGCTGTGTGCTAACCCAATTACTGATGGATGAAAAGAGTGTGTTCGCCATCTGTTCTTGTTGTCCTGGCGTAGACTACGGCCAATAGTAGTCTGTGTAACTTCTGTGTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147882 lncRNA downstream 224202 18313999 ~ 18314242 (-) True G118010
TU147880 lncRNA downstream 238337 18299848 ~ 18300107 (-) True G118008
TU147865 lncRNA downstream 476900 17981829 ~ 18061544 (-) True G117994
TU147839 lncRNA downstream 671459 17865067 ~ 17866985 (-) True G117978
TU147840 lncRNA downstream 671459 17865067 ~ 17866985 (-) False G117978
TU147981 lncRNA upstream 107207 18652766 ~ 18659398 (-) True G118101
TU147980 lncRNA upstream 110906 18656465 ~ 18657534 (-) True G118100
TU148003 lncRNA upstream 187529 18733088 ~ 18733820 (-) True G118115
TU148005 lncRNA upstream 199823 18745382 ~ 18746820 (-) False AMCG00018703
TU148039 lncRNA upstream 292195 18837754 ~ 18842640 (-) True AMCG00018715
AMCG00018689 mRNA downstream 2534 18535525 ~ 18535910 (-) True AMCG00018689
AMCG00018690 mRNA downstream 6133 18529422 ~ 18532311 (-) True AMCG00018690
AMCG00018683 mRNA downstream 517230 18001743 ~ 18021214 (-) True AMCG00018683
AMCG00018682 mRNA downstream 552680 17984479 ~ 17985764 (-) True AMCG00018682
AMCG00018684 mRNA downstream 554535 17982629 ~ 17983909 (-) True AMCG00018684
AMCG00018688 mRNA upstream 11782 18557341 ~ 18562421 (-) True AMCG00018688
AMCG00018696 mRNA upstream 27583 18573142 ~ 18575337 (-) True AMCG00018696
AMCG00018695 mRNA upstream 32568 18578127 ~ 18586515 (-) True AMCG00018695
AMCG00018694 mRNA upstream 60689 18606248 ~ 18634128 (-) True AMCG00018694
AMCG00018699 mRNA upstream 96940 18642499 ~ 18643149 (-) True AMCG00018699
TU147953 other downstream 64199 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 934596 17603356 ~ 17603848 (-) True G117899
TU147639 other downstream 1282173 17226090 ~ 17256271 (-) True G117823
TU147640 other downstream 1282173 17226090 ~ 17256271 (-) False G117823
TU147593 other downstream 1529143 17008898 ~ 17009301 (-) True G117784
TU148096 other upstream 500123 19045682 ~ 19047577 (-) False AMCG00018723
TU148412 other upstream 1442115 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 1532529 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 1898938 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 1944652 20490211 ~ 20490738 (-) False AMCG00018790

Expression Profile