RNA id: AMCG00018691


Basic Information

Item Value
RNA id AMCG00018691
length 3710
RNA type mRNA
GC content 0.40
exon number 12
gene id AMCG00018691
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18590966 ~ 18605862 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGCTTATGGTTCCCACTACAGCCATATAGCCATCATGTCTGGCGGCAGGGCGAAACCCAGGTCGGTGGCAAACCCCCTGAATCAGGCTGTTTCCTCTCCGGGGGAGCACATCTTGCGGGAATGCCACAGCCTCTATACCGACAGCGACAACGgTCTAATAAAGATCGCAAACACTCTGGGTGTCAAGCTGCTTCCTCCGCGCAAGAAAATCATTGTGATGATAATGGGAAACCACTCAGCTGGGAAGAGCTCCTTCATTAACTGGTATGTGGAGGAGCACATTCAGAAGACAGGAGTGGCAATTGAAACGCAAGGTTTCACCTTTGTCACGAGTGGTCGGAAGAGAGAGTCGCTTACGGGCAACGCCACGCTTCACCTGTATCCACATTTTCGACCTCTTCTGGAGTTTGCAGACTACCTCTCTGCTGAGATCTCCACTTCCAAGCAGAAGAAGTTCAGTTTAGTGACATTTGTGGACACTCCCGGGTTGGTGGATGGTGACATGACGTACCCCTTTGATGTGAACAATGCTATCACATGGCTTGGGGAGCAAGCCGACCtcatctttgttttctttgaccCCATGGGCCAGGCTCTGTGCAAGCGAACGCTGAACATTGTGGAGAAGCTCAGCGAGAAGTGTGGCGACAAGCTGCTTTTCTACCTCAGCAAGGCCGACGAGGCAGGCCGGGAGACCGACCGGCAGAGAGTAATGATGCAGATTGTTCAGGAGCTTTGTCGAAGACCAGGTCTGAACAAATGTGGCTTTGAGATGCCCACAATTTACATACCCAACCCACAGAAGCCCAGTCGTTGTGTCAATCAGATTGACACAGTCTGCCAAACAATTGAGAAGACCATCAACCAGGCGGTACAGAAGACTCTGGACCAGCTGGAGAAGGACTGTGACCTGATCTCCAACACAATCCGTAACAAACTAGCACAGGACAGGGAGGACATGGGTTCCAATAAAAGGGCCCGTCTTCACTCTTTCCTGTTCGGGGCTCTTGGGATCCTGCTCCCCTTACTGTTCATCCTCAGCTTTGTAGTCAGCACTTTAACTAGAGAGGTGGTGAAGGCCTTTGCTGGAGAAAGCATAACAACAATTCTCTACCTGAGTACGGGATGGTTATTGAAATTGTGGGACTGGATGCCAGAAGACAgccagattttatttataataattgtagGAGCCTTCTGTTACCTGTTTATATACTTGGCAAAATACTTTGCAAGCCGTACAAACCGAACCctcacaaagagagagaagaagtgCCTGGCAGACTACAGTGATTATATTCAGGAGGTTGTCAAACCGAAGAAGgGGAAGCTATATGAAGAGTATCTGCGCCAGTGTGCCACAGAATATGACCTGAGCTAAAGCAGCGAGCCATTCCCAAGATGTGGACAGCACCCCCCTGAGTGAAAGCGATCAAAATGCAGAGGAATTCTGAGTAGACAATGTGCaagtaataattttaaatataccgTAGTTTGGGATGAAATCGCAGCCTTACATAGAATTGTATTTAAGTGAGGCAGTGGAGGTTCTTCTAGTACAGAGAGACTCTGGATAAATCAGGAAGACAACTCTCAAGGCTGCAGTTGGACGAACAACACGATCGATTGAACCAGAGGTTTGTCTTGGATTTTCTCAAACACAGCACTTGGGTATAGAGCTTTTTAATAGACATTTATACTGCCATTTTTATATTGACTTTTGGTACTTATGTGTTTGTTCTATAGTAAGACTTAGAAGGAAACATGAACGGCCTCTTGAATAACTAAGTGCCTTCTGCATGGaagtcaaatgtaaaaaattgtGGTGCTCAGCAGGGTGACTTGGCTTGTTGTGGATGCATACACCCTGTGGGTTTTCCAACTGATGGGTAGTATCTGGTTAATATAGCAATAGATTAGAGACCGTATAATgtactaatattattttcaggaaataaaatgtgtacatcATTTAAATAAGGTAAACCAATAGATTGCAAACCCATAAATGCCTATTAGAATGGTTAAACATCCTAAACTCAGGCTGTGCCCATTCTTGTGTACGTCACTTTCCATGAGAGACTTTAGTGTCCCACTTGTCCAATGTCCTAATCCTCCAAACAGTGCACTGCGTAGATAACTAGATTAGCCACTCTGTGTTATAAATCCTTTAATGGCTTTTGATAGATGTTTGTTTCGTTTTTATACTCAGAGTGGCAGAGCACAATAACCAACAATGTGAATCATACAGCTATAAGCCGATTAATaataagtgtgtctgtgtgagtgtgtacagCTTGAAATCATAGGCACACAAATTGTGACTTAAATTATACTATGTAATTAAGAAAGTTTAAGCTTGAAATGCTCCCTTTTATCTACATAGACTTCCATATGTTttggcttgtgtttttgatgaAATCTGTGAATACTTCCGGTatagattaaatcaaagcatAGCCCCTCAGTTTTAAAACCCGAGGTTTCTCTGATGACCCTCCTGTTGGATCAAAAGAGGCCTCTAGCAAACAGAAAGCCACTATCAAGGGcttggtttgtaatttgtgataaGCTCTTTGAAACTTTTATTCAATTTTGAACTTTGTCAATGGCCATTAGGTTTTTCAAAGGGAAATTAAGACTGATTTATACACGTTTTTCTAATGTGAATTTTACTGATTTATCTTCAGGTGCATCTTACTGATTAAATGTGGATTTGATTGCTATACAGATATGCTATTGTTATGTCcgaaaatacatttcttgacaGTAAACCTCAACACTTAAACTTCTTCTGTTTGACTGGATTAGTCCATTTGGTCTACCAACACCAGGACTAAGTGTCTGCcagttttatataaattatataatgagtgattgttgttttttcttatcaTGCTAGAAGAAGCAAAATGCTAATGCTAAAACACAAGATACCTTTAATTAACTAACATAGTGAGATTCTTGGATCAACAAGCTAAAATGTGCTGAATGGCTCCTCTAGTCTTACTTTGTGATGATAGTTTTACGGTTTTCATCACTTTTATGTCTGTAGAGCacttttagtgttttgtatgaAAAGGCACAATATACAATTGAATTACTATTGCTCTTATGAAAGTAATAATTTCTGCCAAGGTCTGTTTACAATAAGTATTGCAACAAAGCAATAATGTTGTATGTCTTCATATATACTTCAAAGGATCGTGATTTTAAATGATGACTGAAAATATTGGCAACTGTCACAGGTCTATAAGAAATTTAGTTGTatgctgtgattggctggttgaATGTGGCTGATTAGtacttcaacaaaacaaaaacaagttgaTTTCATAGATCAAATTCCTCTCGGCTTCATTAAAGTTTTAGCACATCCAACAGGCATTACTGGACACCAAAGTGTATTTATCATGGATGTGAAACATTGGAAATGCcaagttttatgttttaataaataaaatgaataaaagtggTTTATTTCCAAATTCAAGTATTTTTGGTTAAAAGTCATTAATACAGTAGTTTTGGAAAGAAGGACAGATTGCTGTGTAGTGTCAGAGTCATGTGCCAAAATAATATATGTCTTATgtggttttataaatgtttgtataaGAACATGAGATTTGACCAATAAAATGTTCTTCTCAATACAggtgtttttcttaaatgtgttttgtttcattttgtatcCTGAACAAAATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147877 lncRNA upstream 372867 18217803 ~ 18218099 (+) True G118005
TU147850 lncRNA upstream 607949 17981210 ~ 17983017 (+) True AMCG00018681
TU147816 lncRNA upstream 610027 17979011 ~ 17980939 (+) True G117959
TU147720 lncRNA upstream 1005854 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 1337943 17250869 ~ 17253023 (+) True G117813
TU147918 lncRNA downstream 68412 18674274 ~ 18676226 (+) True G118043
TU148025 lncRNA downstream 221735 18827597 ~ 18832243 (+) True AMCG00018712
TU148059 lncRNA downstream 300544 18906406 ~ 18908956 (+) False AMCG00018717
TU148164 lncRNA downstream 617512 19223374 ~ 19227433 (+) True AMCG00018732
TU148221 lncRNA downstream 850280 19456142 ~ 19456983 (+) True G118285
AMCG00018693 mRNA upstream 19627 18562533 ~ 18571339 (+) True AMCG00018693
AMCG00018697 mRNA upstream 62845 18527743 ~ 18528121 (+) True AMCG00018697
AMCG00018698 mRNA upstream 153182 18345957 ~ 18437784 (+) True AMCG00018698
AMCG00018686 mRNA upstream 451425 18138045 ~ 18139541 (+) True AMCG00018686
AMCG00018685 mRNA upstream 555338 18023027 ~ 18035628 (+) True AMCG00018685
AMCG00018692 mRNA downstream 40657 18646519 ~ 18659398 (+) True AMCG00018692
AMCG00018701 mRNA downstream 79277 18685139 ~ 18690239 (+) True AMCG00018701
AMCG00018702 mRNA downstream 113606 18719468 ~ 18721139 (+) False AMCG00018702
AMCG00018708 mRNA downstream 123174 18729036 ~ 18729506 (+) True AMCG00018708
AMCG00018700 mRNA downstream 127245 18733107 ~ 18734584 (+) True AMCG00018700
TU147849 other upstream 608663 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 608852 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 1521296 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 3634386 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 3802833 14786623 ~ 14788133 (+) True G117383
TU147936 other downstream 113344 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 842764 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 1365277 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1653515 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1768134 20373996 ~ 20374812 (+) False AMCG00018781

Expression Profile