RNA id: AMCG00018702


Basic Information

Item Value
RNA id AMCG00018702
length 393
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00018702
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18719206 ~ 18721343 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGTGCAGTCTGTACCCATCCGGGACCTGGCCTTTTACCAGCGATGGCTGCAACAgtacttgtatttattaaaacactaCCCGATTCTCACCAAATCCGTGACGAGACTGTGCGTCACAGGACCTTTGAGTCACTATTTCTACCACTTTCTGGAAGTTCTCGTCCCTTCTTCCGTGCCTTACTGCATGGTGAAGAGACTGCTGCTGGATCGCTTAATCTTCGCTCCCGCCTTCCTACTACTCTTCTTCGTCATCATGAACGTTTTAGAGGGTAAGAACTGGTCAGCATTGCAGGGCAAAGTGAGATCAGGGTACTGGACAGCCCTGAAAATGAACTGGAAAGTGTGGACCCCCTTCCAGTTTATCAACATCAACTATGTACCCGTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147918 lncRNA upstream 43242 18674274 ~ 18676226 (+) True G118043
TU147877 lncRNA upstream 501369 18217803 ~ 18218099 (+) True G118005
TU147850 lncRNA upstream 736451 17981210 ~ 17983017 (+) True AMCG00018681
TU147816 lncRNA upstream 738529 17979011 ~ 17980939 (+) True G117959
TU147720 lncRNA upstream 1134356 17584751 ~ 17585112 (+) True G117887
TU148025 lncRNA downstream 106458 18827597 ~ 18832243 (+) True AMCG00018712
TU148059 lncRNA downstream 185267 18906406 ~ 18908956 (+) False AMCG00018717
TU148164 lncRNA downstream 502235 19223374 ~ 19227433 (+) True AMCG00018732
TU148221 lncRNA downstream 735003 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 746684 19467823 ~ 19473460 (+) True G118290
AMCG00018701 mRNA upstream 29229 18685139 ~ 18690239 (+) True AMCG00018701
AMCG00018692 mRNA upstream 60070 18646519 ~ 18659398 (+) True AMCG00018692
AMCG00018691 mRNA upstream 113606 18590966 ~ 18605862 (+) True AMCG00018691
AMCG00018693 mRNA upstream 148129 18562533 ~ 18571339 (+) True AMCG00018693
AMCG00018697 mRNA upstream 191347 18527743 ~ 18528121 (+) True AMCG00018697
AMCG00018708 mRNA downstream 7897 18729036 ~ 18729506 (+) True AMCG00018708
AMCG00018700 mRNA downstream 11968 18733107 ~ 18734584 (+) True AMCG00018700
AMCG00018711 mRNA downstream 88237 18809376 ~ 18821287 (+) True AMCG00018711
AMCG00018712 mRNA downstream 106561 18827700 ~ 18840095 (+) False AMCG00018712
AMCG00018710 mRNA downstream 125437 18846576 ~ 18869867 (+) True AMCG00018710
TU147849 other upstream 737165 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 737354 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 1649798 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 3762888 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 3931335 14786623 ~ 14788133 (+) True G117383
TU148213 other downstream 727487 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 1250000 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1538238 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1652857 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1793021 20514160 ~ 20514491 (+) True G118623

Expression Profile