RNA id: AMCG00018717


Basic Information

Item Value
RNA id AMCG00018717
length 4791
RNA type mRNA
GC content 0.48
exon number 15
gene id AMCG00018717
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18894335 ~ 18908956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCACCTCCACGATTTTGGGCTTCTATCGCATGGCTGAGCCAGAAGAGCCCCCCTCCGTGTCCAGCGGTGGCTCAGGGGACAGTGGAGACAGCCAACAGGATGAGTCTTTCCCTTTGTCCTCACTGGCCAACCTGTTTGAGGGCGAGGAGAGCTCCCCAGCGCCGGAGCCAGCGCCCCCCCGGTCTGGCGAGAGCCGCCCAAACCTGCGTATGAAGTTCCAGGGCGCCTTCAAGAAGGGCATCTCCAACCCCATGGACCTGCTGGAGTCTACCATCTACGAGTCAACGGTGGTTCCAGCACCCAAGAAAGCGCCCATGGACTCCCTGTTCGACTACGGCACCTACCATCAACCCAGCAACCAGAAACGCCGTAGGAAAAAGATTAACACCGGAAGCTCTGTCACACTGCCTTCTGATTTCTCTCCCTGTATTTCTGAACCTAACTTTCAACCGCAGTCTTTCTTCCTCGACATGAGTTTAGATGTTGTCCCCCACCACAGTCAAACCCAGTCCAGGCGTTTACTCCAGTGTCCTTACCTGTCCCCGTCCCCATCCCTGTGTTTGCGCAGTAGTGTGAAGGGccctgcccccgcccccccgcctGTGCTCAAGGTGTTCAACCGCGCGATGCTCTTCGACGCCGTCTCCCGGGCCGACAGCGAGGCTTTACAAGGGCTGCTACCCTTCCTGCTGGGACAGAAGAAGAGGCTGACGGACGAGGAGTTCAGAGagcCTTCGACAGGGAAAACATGCCTCCCCAAAGCTCTGCTCAACCTCTACAATGGCTGCAATGACTGCATCCCGCTGCTGGTGGATATCGCTGAGAGGACGGGCAACCTGCGGGAGTTTATCAACACGCCCTTCAGAGACGTCTACTACCGGGGGCAGACCGCTCTGCACATCGCCATCGAGCGGCGCTGTAAGCAGTATGTGGAGCTGCTGGTGGAGAAGGGAGCGGATGTCCACGCTCAGGCCAGGGGGCGCTTCTTTCAGCCCAAGGACGAGGGCGGTTACTTCTACTTCGGCGAGCTCCCGCTGTCCTTGGCCGCCTGCACTAACCAGCCAGACATGGTGCACTACTTGACCGAGAACGCCACTAAGAAGGCGGATCTGAGGAGACAGGACTCCCGAGGCAACACCGTGCTCCACGCATTGGTGCACATCGCCGACAACACCCGGGACAACACCCGCTTCGTAACCAAGATGTTCGACCTGCTGCTCATCAAGAGTGCCAAGCTCTACCCCGACTGCAGCCTGGAGACGGTGCTCAACAACGACAGCATGTCACCCCTCATGATGGCCGCCAAGCTTGGCAAGATTGGGGTGTTCCAGCATATCATTCGTAGGGAGATCAAAGATGAGAGCGCCCGCCACCTGTCTCGCAAGTTCAAGGACTGGGCCTACGGTCCTGTCTACTCCTCCCTGTACGATCTCTCCTCTCTGGACACCTGTGGGGAGGAGGTATCTGTGCTGGAGATCCTTGTGTACAACAGCCGAATCGAGAATCGCTACGAGATGCTGGCCGTGGAGCCGATCAACGAGCTGCTCAGGGACAAGTGGCGGAAGTTCGGTGCCGTCACGTTCTACATCAGCGTGGTGTCCTATCTGGTGGCCATGGTGATCTTCACCCTCGTTGCCTACTACCGGCCTTCTGAGGGCACACAACGTGAGTCCACacccacacgcacactcacacatggGGCTAAACTCCATTGCTCCATCAAGATCAAGGACCTCTTCCTGAAGAAATGCCCTGGGGTGAACTCCTTGTTTGTGGATGGCTCCTTTCAACTGCTCTACTTCATCTACTCGGTGCTGGTGCTGGTCTCAGCCGCCCTCTACCTCTCAGGGATCAAGGCCTATGTGTCGGTGATGGTGTTTGCCCTGGTACTGGGCTGGATGAACACTCTCTACTTCACCAGAGGCCTCAAACTCACTGGAACATACAGCATCATGATCCAGaagATTCTCTTCAAGGACCTGTTCCGGTTCCTGCTGGTCTACGTGCTCTTCATGATTGGATACGCTTCTGCCCTGGTGTCTCTCCTGAACGCATGTCCAAGTCCAGACGCAGAGTGTCCAGGAGGCAATTGTCCCACCTACCCCCAGTGTCGGGACACGGGCACCTTCAGCACCTTTCTGCTGGACCTGTTCAAGCTCACCATCGGCATGGGCGACCTGGACATGATCAACAGCGCCCAGTACCCGGCCGTCTTCCTCATCCTGCTGGTCACCTACATCATCCTCACCTTTGTCCTGCTCCTCAACATGTTGATCGCTCTGATGGGGGAGACTGTGGGACAGGTGTCCAAGGAGAGCAAGAAGATCTGGAAGCTGCAGTGGGCGACCACCATCCTGGACATCGAGCGCTCCTTCCCAGTGTGTCTCCGCCGGTCGTTCCGCTCGGGGGAGATGGTCACAGTGGGCAAGAACTGTGACGGGACGCCTGACCGGAGGTGGTGTTTCAGGGTGGATGAAGTGAACTGGTCTACCTGGAATCAGAACCTGGGAATCATCAACGAGGATCCGGGCAAAAACGAGACCTACCAGTACTACGGCATCTCGCAGACTGTCAGGGGGCTGAGGAGAGATCGCTGGTCCACAGTTGTCCCCAGGGTGGtggagcaaaataaaaacccGCGGTCTGGGGAGGCAGTGGTGGAAATGGAGCAGTTTGAGCCCCTCAATCCTGGACACAAGTACATCGCCGAGAGACACAACTGACACTGAGACAAAGAGCCACACACTCTCGCTACCAGGGCCCGGCCCGAACTGGAGTGGGTGAGATGGAGCGGAGAGGTGACGCGtgcaccctctctctctcttccattgCACAGACCAGGTTTTGCGAGTTTGCACAGACGTCTGCTGTAGTGCCTATTATTTGTCTACCACGTATGAGGGCGTGTTTACCAAAGATGCTTCCTATGAGGAAGATTAGGCAAACATCTCATAGTTAAAAACGGTTTTATTTTAACCACAGGACATTGATTTTAGAAGGAACTGGTTTTgtactgctttaaaatgtattttttgaaatCAAAGCCAAggtcaaatgtatatattgtttaattttgttacaaAGTATCACTCAGGGATTTTAAGAAGCAGGAAATGTATGACAATCATTGCCAGTCTACCGCTGAAATTAAATCCTATTTTTAAGTTTGTACTGACAAATCCTATAGATCTTTAACACTGTGTATCGGACAGGCTAAatttttctatttatgtttAGTAGTCAGGGAGTGATTTTGAAGTAATTTGTGGCCCCtgtacattttctattattatttaaactttttaggTTCTGTATAATATCGATTTTAACCTTTCACAGCTCAGATATGGCTTATAAACCTAGGATAACTGAATAACCTTAAAATCAAGATGATTTAATGCTGTACTATTAGACATACCATGCAATTCAGGATAGAGCAGTACAGTTGCATCACAATAATCCTACACTAGGTGCCAGTGTAGCACACATTATAGGGAACCTGAAGGAAAACTGATTTCTgatttcttcagaaacatgcaGTGCCAGATTTTCACGTGAACGTTTTGAAAATTCAAGGCAATGAGCAAATCGTAGTCTCTGTCTGCAAAATGTGGTAATTaactgaaaaatacagaaaaggaaCAATTTGCAGTGAACTGCAGTAGAATTGAAGGGGAATAAATGGTCCCAgtgcattaattaaatgttaaatgaacTGGAGTGTTTGACATGACCGCACTATATAACATGGGTGTGATATATGAATGAACAGTGTGCGCATGCAGTTCATATcattgcttctgtttttaaaatacaaacttatTGTACTACGaagaaagatgtattttaatcatgtaattcctgtaattatttatagcttgtttgttattttctagATCTAGAGACCTGCTTTAAGAGAATACCTCCGTGAAGGccacaaatgttttaataccATATTTAAACTTATTATGCATGTTTCCTGTTACCTTGATGCTTTTCTTCTCCCATGCTAACACTTGAAGCTAGGCCAAACTATCTATTTTTCCCTAAACAAATCTGACTCTGGTGCCATCATCTACTTTAATATTTAGTTCTaccaaaacaatatacaatactatCTGgtaatacagtgtgtgtgtgtgtgtgtgtatatatatatacacacacacaccagtctTTGACCAATGATAAATAACTACATTCGTCTTGTATATTTATGGAACCTTTTTTTGGATGGGTCATGCTTTTCATTTAGTGgcagtttttgtttagtttctgtttCCCACAAAGCTAACATCAAGAGGTAAAGGCACATTTCAAGTTAGACACTACTTCTGTAATTATCCAATTCAGTGCAACTATCATGTGAAtatctttttcctttctttttatttttatacctgGCAGCATTTTTTGCAACAGCTGAAGACAAATCAGGTCTGTACAGATAttgattacatatttaatagACATTACAAGCCCCCTCGTGTCCACTGACTGGGTGGAAATCCGTGTGGGTTATGGTAGGAGAGTTctagaatgttttttaatgtggaaTGACTTTGAATAGGAGAGCTTGGTTAACATATTCACTtttcaaaatagattttaaaaagtagtttttttttttttaaccttgtataaatatttttttattagacagcattttcactttccttttcttgtgTATTAATGTCACTGTTGGACATTTTGAGGAATctcttttaaatgcttttttgtgCCAAAATTAAAGCACCtatgaagtttttatttatacattttttaagcc

Function

GO: NA

KEGG:

id description
K04973 TRPV4; transient receptor potential cation channel subfamily V member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148025 lncRNA upstream 62092 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 163523 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA upstream 218109 18674274 ~ 18676226 (+) True G118043
TU147877 lncRNA upstream 676236 18217803 ~ 18218099 (+) True G118005
TU147850 lncRNA upstream 911318 17981210 ~ 17983017 (+) True AMCG00018681
TU148164 lncRNA downstream 314443 19223374 ~ 19227433 (+) True AMCG00018732
TU148221 lncRNA downstream 547211 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 558892 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 570760 19479691 ~ 19479956 (+) True G118291
TU148240 lncRNA downstream 668033 19576964 ~ 19579031 (+) True G118304
AMCG00018716 mRNA upstream 8356 18876770 ~ 18885979 (+) True AMCG00018716
AMCG00018710 mRNA upstream 24468 18846576 ~ 18869867 (+) True AMCG00018710
AMCG00018712 mRNA upstream 54240 18827700 ~ 18840095 (+) False AMCG00018712
AMCG00018711 mRNA upstream 73048 18809376 ~ 18821287 (+) True AMCG00018711
AMCG00018700 mRNA upstream 159751 18733107 ~ 18734584 (+) True AMCG00018700
AMCG00018720 mRNA downstream 138857 19047788 ~ 19050639 (+) True AMCG00018720
AMCG00018719 mRNA downstream 164173 19073104 ~ 19078777 (+) True AMCG00018719
AMCG00018725 mRNA downstream 199445 19108376 ~ 19116265 (+) True AMCG00018725
AMCG00018724 mRNA downstream 244527 19153458 ~ 19154597 (+) True AMCG00018724
AMCG00018730 mRNA downstream 256955 19165886 ~ 19181728 (+) True AMCG00018730
TU147936 other upstream 172992 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 912032 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 912221 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 1824665 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 3937755 14954564 ~ 14956580 (+) False AMCG00018602
TU148213 other downstream 539695 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 1062208 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1350446 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1465065 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1605229 20514160 ~ 20514491 (+) True G118623

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060174 True 2741 mRNA 0.48 15 NC_007116.7 19795977 ~ 19833310 (-)