RNA id: AMCG00018719


Basic Information

Item Value
RNA id AMCG00018719
length 2698
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00018719
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19073104 ~ 19078777 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagaactttaaACTACTAAACTTCCAGTTATCTTGTGATGTGACACAAATTTCAACAGGATCTCATGGAAGAGATGTCGGGAGAAAGCGTGGTGAGCTCGGCAGTGCCGGCGGCTACAACTCGGACCACCTCCTTCAAGGGCTCCAGTCCGAGCTCCAAGTATGTGAAGCTGAACGTGGGGGGGGCGCTGTACTACACCACCATGCAGACCCTCACAAAGCAGGACACCATGCTCAAGGCCATGTTCAGCGGCAGGATGGAGGTGCTGACGGACAGTGAAGGCTGGATCCTGATCGATCGCTGCGGGAAGCATTTTGGGACGATTCTCAACTACCTGCGGGACGGCGCCGTACCTCTGCCCGAGAGCCGCAGGGAGATCGAAGAGCTGCTGGCAGAAGCCAAGTACTACCTGGTACAGGGGCTGGCAGATGAGTGCCATGCAGCGCTTCAGaacAAAGATATGTACGAGCCGTTCTGTAAGGTACCTCTTGTCACATCGCCCAAGGAGGAACAGAGACTCATCGCCACCTCTAATAAGCCGACTGTAAAGCTTTTATACAACAGAAGCAACAACAAATATTCCTATACCAGTAACTCGGACGACAACATGCTGAAGAACATCGAGCTGTTCGACAAGCTGTCTCTGAGGTTCAACGGGAGGGTCCTGTTCATCAAGGACGTGATCGGGGACGAGATCTGCTGCTGGTCCTTCTACGGGCAGGGCCGCAAGATCGCCGAGGTGTGCTGCACGTCCATAGTCTACGCCACCGAGAAGAAGCAGACCAAGGTGGAGTTCCCCGAAGCCCGCATCTACGAGGAGACCCTGAACATCCTGCTGTACGAGTCCCAGGACGGGCGCGGGCCGGACAACGCCCTGCTGGAGGCCACGGGGGGCGCGGCGGGGCGCTCTCATCACCTGGACGAGGACGAGGAGAGGGATCGCATCGAGCGCGTCCGGAGGATCCACGTCAAGAGGCCAGACGACCGCACACACCACCACCAATGACCGGGCCACCCCCTGGCCTGCCTTACAAACTTCCGGTGCAGTTCACCTTAAACCACAGCCGCTCCTCCGGTCGCTGCCCTCTCGAAGCCTGTGTCACTGAGGCCGCCCCCTATAGAGACCACAGGCTGCAGCTGGTGAGGAGAAGTTAGTTCCCTTCATCTTCagtgactttttaaaaattgtatgtaGAAGTTCTTTGACCTGTACTGAAGCAATGACCAGTcttaacacaacacaaatccAGTTGTCCATATTCCCCCctaaaaatgtctaaaatgcTTCCGGCTTCAATTGGTCTTGGGTGACAGGTATCTGACGTGCTATACAGGCGGATGTCGCCATTTCACTTGCATGGACTGAGGAGGAACAGTCGGCCCGAGCGCTGACATGCTTCTTTAGATCAGTAAGTTGTGAAGGCACGAGCTACAGGAGATGAAGAGTGCTGTGGGGCTCCAGCAGGAGGGTGCACTGCTATGCATGCTGTACAGAGgttatagattattttttaagcGCTTttagttaaacaaacaaaaacatatattcaaAATCCAGGAAGGCGGGTTATACAAATTACTGTGTAACAGCATAATGTGGTCCAAGACTGAAGCATTCCTGTATCTATCACTCCATTTATGATGCATCAGTACTTAAATGATAGGTCCTGTATTAATTAAGCCAACAGGGCACTTGGCCTTCAGTGTAACGAGTTCGTCCTGCAGTATCTCGTAGATGTCCGCTTATCTCTACTTGTGGAAAGAAAAGCTGTTCGCCTGCTAAGATCTCAATTCCAGCTTCCGTGGTAAAATAAAAGAGCAGCATTAGGtgaaggaagaagaaaataaataaataaaaaggcaacCAAGAccgttttttgtattttgggcATCGGCATATAGACTTCATTCCAAAACCAATTCAAGAAACAGGCCAAGAAATAACGTTTTAAAAATATAGCAAATGCACATTTTCCTTCAGTATATTAAGACGTCTGCTCTTTAACTTGTATGCGTGTGAAGGATaggttttttttatgtgtgtgtgcatcggGTAGTTGTAAATAATGAGCTATGGATTGTTTTAATCGACTACAATCTCCACTCCatactgtgtgcagtgtttATACACCGATTCTGCTCACCTTCCAAAGAGTGCAGCAAACGGTTCAAAAGCCTAGTTTACTTTTTCTGTGCGGTTAAATCAAACGTTCAGATGGGTGGGATTAACGTCTGAAGAGCCCAGAGGGACGGTAGGGGTTTGGTTGCATCTTGTTAAAGCCTTGATGTTCATTATGGAATAGAATGCAAAGTGtttcttgagagagagagagagagagaatttgaaCATTTCTCTTGTGTGTGGTCTTATCCAGAGGTTCATGAAGATGGGTTATGAACGATCTTGCAGAGTGTTTTGATGCTGTTTGCCTCCAGAGGGCAGTGtgagctacaaaaaaaaagctccGGTAGAACCGATATCATTTTGGTCCGTCAAGGGAGCTTTAACGGTGTCGGAATTAAACTGTTCTTCATTCCAGCTCATACACGGGAATGTATGTTTGTACTTTGCTAGAGAAAGAGATGCATTTTTTACAATCATTATACATACAAATTTCTTTTTGTGTGGCTATACACAGAGAAAGGCTTCAACTATATTTATAGATGcagatcaaaataataaaaactaaaagagTA

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K15074 BACURD; BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148059 lncRNA upstream 164148 18906406 ~ 18908956 (+) False AMCG00018717
TU148025 lncRNA upstream 240861 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 342292 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA upstream 396878 18674274 ~ 18676226 (+) True G118043
TU147877 lncRNA upstream 855005 18217803 ~ 18218099 (+) True G118005
TU148164 lncRNA downstream 144597 19223374 ~ 19227433 (+) True AMCG00018732
TU148221 lncRNA downstream 377365 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 389046 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 400914 19479691 ~ 19479956 (+) True G118291
TU148240 lncRNA downstream 498187 19576964 ~ 19579031 (+) True G118304
AMCG00018720 mRNA upstream 22465 19047788 ~ 19050639 (+) True AMCG00018720
AMCG00018717 mRNA upstream 164173 18894335 ~ 18908931 (+) True AMCG00018717
AMCG00018716 mRNA upstream 187125 18876770 ~ 18885979 (+) True AMCG00018716
AMCG00018710 mRNA upstream 203237 18846576 ~ 18869867 (+) True AMCG00018710
AMCG00018712 mRNA upstream 233009 18827700 ~ 18840095 (+) False AMCG00018712
AMCG00018725 mRNA downstream 29599 19108376 ~ 19116265 (+) True AMCG00018725
AMCG00018724 mRNA downstream 74681 19153458 ~ 19154597 (+) True AMCG00018724
AMCG00018730 mRNA downstream 87109 19165886 ~ 19181728 (+) True AMCG00018730
AMCG00018731 mRNA downstream 127278 19206055 ~ 19222946 (+) True AMCG00018731
AMCG00018732 mRNA downstream 144391 19223168 ~ 19234351 (+) False AMCG00018732
TU147936 other upstream 351761 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1090801 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1090990 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2003434 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 4116524 14954564 ~ 14956580 (+) False AMCG00018602
TU148213 other downstream 369849 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 892362 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1180600 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1295219 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1435383 20514160 ~ 20514491 (+) True G118623

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_01113148_01115596.mRNA True 2065 mRNA 0.43 6 CI01000071 1113148 ~ 1116722 (+)