RNA id: AMCG00018725


Basic Information

Item Value
RNA id AMCG00018725
length 1419
RNA type mRNA
GC content 0.59
exon number 9
gene id AMCG00018725
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19108376 ~ 19116265 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATAGAAAGTGGAATTACGTCCAGAATGTCAGGAATTCTTGGAAATTCAGGACAAAGTCATCACCCTTCTGCACAGGATTATAGATTACTGACCACAGACCCCTCCCAGCTGAACGAGGATGACCTCCCCAGTGACCTGCAGTCCCTGTCCTGGCTGACCTCAGTGGACGTACCCCGTCTGCAGCAGATGGCCACAGGCCGCCTTGACTTCAACATCAACTCCCAGGGTGCTTTGCTGGAGCAGCAGACCGcccAGATGAACAACATTAATGTGACTGGAGGACAGGGGACCATGATTCACCTTCAGAGCAACATGCAGAACAGCATTCTGGGAATGAACGCCATGACACCACACAGTGGCAATATGACCCAGTACTCCCTCAGTGGGCAGCCCTCTCCAGGCTTCCAGTCGCCCCCATCTGTCTACCAGCCCCCACCTCAGCAGGTCTTCACCATTGCCCAGACTGGCCAGCAGTGCTCTCCTGCCGGCCTCTATAGCAACACATCCTACAACCACAGCCCCTTCAGCCAGCCTCGCCTCGCCCCTCACACCAACCAGGACCTGCAGCCCAAATCCTACCCCAAGCCCATCTACTCATACAGCTGTCTGATCGCGATGGCTCTGAAGAACAGCAAGACCGGCAGCCTCCCAGTCAGCGAAATCTACAGTTTTATGAAGGAGCACTTTCCCTATTTCAAGATTGACAAgatggaggaggagatgcaAAAGTGGAAACGCAAGGACCTCCCTGCCATACGCCGCAGCATGGCCAACCCAGGCAAGACCACAGAGCTCTCCTaTGAGCTAGACAAGCTGATCACAGACCGCCCGGAGAGCTGCAGACGGAAGGCGTGTGACGCGGGGGTGACCCGGCTGCCCACCACCCAGGGAGGCCTGACGCTGCCCCCCCACCTGCAGCCCCAGCCCGTGATGACGCTGTCCCTGCAGTCCTTGCACCATCACCAGATCCAGGCTCAGGCCCGTCTCGCCCCCGGATCGCCTGCCCCGGCCCAGACGCCTCCTCTCCACACGGTGCCCGACCTCTCCCACAGCCCCCTCGGCCCCCAGCCCAGCAAGCCCCCGCACAACTTCTACAGCCTGCACGGCGACATGAGCACCGAGGTGGACTCGCTGGACCCCAGCATCATGGACTTCGCTCTACAAGGGAATCTGTGGGAAGAGATGAAGGACGAAAGTTTCAACCTGGAGACACTGGGTGCCTTCAGCAACTCCCCTCTGCGGCTCTCCGACTGCGAGTTGGTGACCCCCGGCCTGACGCCCGTGTCCAGCGCCAGCGACCTGTCCTTCTCCGACCTGCAGGTCACTGGCTTGTACACCACCTACACCACCCTGGACACCGTCTCCTCCCAGTACATGAGCACGCAGGGCAGCAACAAGCCCATCGCCCTGCTCTAA

Function

GO: NA

KEGG:

id description
K09407 FOXN; forkhead box protein N

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148059 lncRNA upstream 199420 18906406 ~ 18908956 (+) False AMCG00018717
TU148025 lncRNA upstream 276133 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 377564 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA upstream 432150 18674274 ~ 18676226 (+) True G118043
TU147877 lncRNA upstream 890277 18217803 ~ 18218099 (+) True G118005
TU148164 lncRNA downstream 107109 19223374 ~ 19227433 (+) True AMCG00018732
TU148221 lncRNA downstream 339877 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 351558 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 363426 19479691 ~ 19479956 (+) True G118291
TU148240 lncRNA downstream 460699 19576964 ~ 19579031 (+) True G118304
AMCG00018719 mRNA upstream 29599 19073104 ~ 19078777 (+) True AMCG00018719
AMCG00018720 mRNA upstream 57737 19047788 ~ 19050639 (+) True AMCG00018720
AMCG00018717 mRNA upstream 199445 18894335 ~ 18908931 (+) True AMCG00018717
AMCG00018716 mRNA upstream 222397 18876770 ~ 18885979 (+) True AMCG00018716
AMCG00018710 mRNA upstream 238509 18846576 ~ 18869867 (+) True AMCG00018710
AMCG00018724 mRNA downstream 37193 19153458 ~ 19154597 (+) True AMCG00018724
AMCG00018730 mRNA downstream 49621 19165886 ~ 19181728 (+) True AMCG00018730
AMCG00018731 mRNA downstream 89790 19206055 ~ 19222946 (+) True AMCG00018731
AMCG00018732 mRNA downstream 106903 19223168 ~ 19234351 (+) False AMCG00018732
AMCG00018737 mRNA downstream 158644 19274909 ~ 19282966 (+) True AMCG00018737
TU147936 other upstream 387033 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1126073 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1126262 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2038706 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 4151796 14954564 ~ 14956580 (+) False AMCG00018602
TU148213 other downstream 332361 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 854874 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1143112 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1257731 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1397895 20514160 ~ 20514491 (+) True G118623

Expression Profile