RNA id: AMCG00018726


Basic Information

Item Value
RNA id AMCG00018726
length 3611
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00018726
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19155021 ~ 19162622 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCCGGGCCCGCCGCGGGGAGGATGCAGTGCCGAGCGGAGGCCGCAGACAGGCTCGTCCGGGACTTCCTGAGGACGGGATCGGCTGTCAGGAATAAGATCATGAAAAACTGGGGAGTGATTGGCGGGATTGCTGCTGCCTTGGCGGCTGGAGTTTATGTCCTTTGGGGACCCATCACTGAGAGAAAGAAACGGAAGAAAGGTATGGTCCCAGGCCTGCTGAATCTGGGCAACACTTGCTTTCTGAACTCTCTGCTGCAGGGCTTGGCAGCCTGCCCCTCCTTCATCAAATGGCTAGAAGAGTTTGCAGCCAGGATCATTGTGGACCAGAACCAGGAAGAACGGGAGCCCCAGCTCTCTAGAACTCTCCTGCACCTGCTCAAGGCTCTGTCCAGTCACGAGGCCGTAGAGGATGATGTTCTGGACGCAGGGTGTCTCATGGATGTCCTCCGGTTGTACAGATGGCAGATCAGCTCATTTGAAGAGCAGGCCCTTTACACCCTTTTCCGAGCCCTTGGAAATCCCAGCATCCGTTTCACGGACGTCTGACAAGCAACATGGTGTGCAAGCGCTGTGAACAACAGAGTCCAGTCCGGTATGATTCATTTGACAGCCTTTCACTCTCTATCCCTACAGCATCCTGGGGACGCCCTGTGACTCTGGACCAGTGTCTGCTACATTTCATCTCCTCGGAGGCCATCAAAGAAGTGGAGTGTGAAAACTGTACCAAGATCCAGGCAGGTGGAGTGCTCAATGGGCAGGTTGTGGAGAGCCAGAGGACGACCTTTATCAAACAGCTCAAACTGGGCAAGCTGCCCCAGTGCCTCTGTATCCACCTCCAGAGACTCACATGGTCCAACCAGGGCACACCCATCAAACGGCAAGAGCACGTGCAGTTCTCAGAATTCCTGTCCATGGACTGCTATAAGCACCGCACCCCAGGTCAAAGGTCACTGCGGGCAAACCGGTCATTTGGGGCAGTCAGAGTGGACAGTGCCAGAGATGGTCAAGAAAGGACGTCCCCCAAGGGTTCAGATCCAGAACATTATTGCAATAACAAGAAGCCGATGACGAATGGGGCGTGCTCAGCCGCCATTCTCAACTCCCCTGTGTTGAGCCCTCAGTTCTCCCTGGCCTATGATTGCAACACTGCGATGTATCTGTTCCGGCTGACGGCGGTGTTGGTCCACCATGGAGACATGCACTCAGGACACTTTGTCACGTACCGGCGCTCCCCCCCCTCGTCCCGTAGCCCCTCGGCCTTCAGTAGCCAGTGGCTATGGCTGTCGGACGACACCGTGCGCAAGGCCACCTTGCAGGAGGTGCTCGCCTCCAACGCCTACATGCTCTTCTACGAGAGGGTGCGCCCCTCCAGCGCCAGGCACGAGTAGGACCTGCTTCGTCTTCCAACTGGCTCTCCAAACTGTAGACCCCGCCCTGCCTCATGTCGCGGTGTGTGCCAGACCTTTCCTCCGACTCTTCCCAGACTGTGCGATGCTCAAAGCCCCATGTGCAATTTTGAATTCCgtattgctatttattatttttgatgtaCCACAACTTCCAAGAAAAGGGATGTCAGAAAGGTGTCTGGCAGTGGATCGGATTTTCAATTGGGGATAACTTTCCTTTCCCAAACCACTGCTGAATCCCCTGTCCTAATGGCTGGTCTTCACTGTTTAAAGGCTTGTGCAGGGAGGTGCAAACGAACTGGATGACTCAACCTCTCCACTGAACcctcttccttcttccttttgAAGAAGTACAGCTGAAGCTTCTCAGCACCTCAGGTTGTACTATGAACGTCTGGACTCGAAAGGCAAAAAAATTAGTGCTCAAGGCTGTAATGGTAAAGGAGGAGTGCGTAACTGGATCACGGGAGGGAACACGCAGCTCCTTCACTTAGTCACTGGATCTGATAGAGAAAATTGTGACACCTGCTGTAGAGGAGGAGTAATAGAGATACTTACAACATATCTGATGTTACAGCATGCCTAGACTCGTGGGATTTATCCTGAATCCAAAGGGTTGGACTGATCTATCACATGAACTATGAATATGAATAGAGCAATGTAAACTAAAGGCCAGGAGATTATCGTTATCAATCTTGACAACCTGAAGATGGAAAGGGGCAGAGGAATCTACCTGTCGTCCTCATTTGGGTTTGTCTCTGTAGGCTGTTACACTCTTCATCCCAAATTGCACTGTAGGTCATGCTAGCATCTTCTAAAGCAATCCAAAGGCTTCAAACATCAGGgaatagaaaactaaaatcagaAGGCAAAATGGTTTTGAATAAAGTGCCTCCTTGTTTGTCTGAACTAGAAAAGAGTGTAGTTtcagtttgtatgtattttcctCATGCTGGGAATGCATTGGGTTGTAATCATGATTGTTCCATCAATGCAGGGCAGTTGGTTTATTGACTGTGCTCTGTATGGTATGTATGGAAGCGGTTTGGTTCGAACCAACCTGATAGTCTCCTATATAGATTTATTGAAGGACATCACCTCTGCATGCTGCTACTGTGATGCCTCTATACATGCATTTTGATACATCTGCATCACCAAGTAAGCTGCAGTTCTCAATGGAAAGCCTCTGCCCCTATTCATAACTTCTCTGTCAACGAGGCTGTGGTTGATTTAAAATCCAACAACCATCAATAACATACCAAACCatttccccagacatttcaaaGAACTGCCAGAGGAGGTGAGAGGAGATATATAGGATTGTCAAATGTTCTGAGTAAATGTGGCGCGTTTGCATCCAAACTACTTAATGACGGGACACTGTGTACTGATAGACACTTTGTAATGATTGCCAGCAAGGATGGAGTTACAGCCTTTGAAACCTGCTGAAATAACTTGTTACCCTAACCCTCTTGGTTACTGTTTTGGCTGTAAATAAGATTGCATATAGCTTCGAGTTAAATAGTCACCGATCCATAGCAGCAGATGCAATCTTTGTAGCTATGTTACACCTATAAATAGATAACCAAGTCCCAACGGGGTAATTCCATTAAGTTCCTACGTCCCAGTGAAAGAAAAACTGTTTGTGTCTGCGtttgatatatgtatgtatgttgtgttcattaataatagtatgttCTCTATTTTTCTTTACGACTCACTATATTTTGATGATTGCCGAAGATCTAAGAATGGGCCAAACTGCTATGCCAGTGGCAGTTGGCAGATAATCTCCCTAATGGAAGCAaaattatagtatttatttataagaacctgaagatttcaaatttaccaaaaaaaaataagaggtGGCTGAACCTGAAGAATAACATCCTAACCCTGCaattatatcaataataatattggaaTGTGTGACCAATCCTGTGGGTGATGTttccaaatgtgttttatatacaggACACAATTACTGCCCACCACTCTAATGTAATCAGTGTTACCTTTGAAATATCCTAAATGCTCCCGAGTATAACTGTACTGCAAGACATTTGCACTGactaatgtatgtttttaatatatacttgTTGTGTGATTGTAATTATGCCAGATGTATTTTGATGATGTTTTCATAGATTTCAATATTAAAGAATGGAATTGTTAATAAAATGGATCGAATATGATA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11851 USP30; ubiquitin carboxyl-terminal hydrolase 30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148054 lncRNA downstream 269037 18883059 ~ 18885984 (-) True G118147
TU148039 lncRNA downstream 312381 18837754 ~ 18842640 (-) True AMCG00018715
TU148005 lncRNA downstream 408201 18745382 ~ 18746820 (-) False AMCG00018703
TU148003 lncRNA downstream 421201 18733088 ~ 18733820 (-) True G118115
TU147980 lncRNA downstream 497487 18656465 ~ 18657534 (-) True G118100
TU148149 lncRNA upstream 15859 19178481 ~ 19178740 (-) True G118223
TU148165 lncRNA upstream 58675 19221297 ~ 19221632 (-) True G118238
TU148166 lncRNA upstream 62050 19224672 ~ 19227434 (-) True G118239
TU148198 lncRNA upstream 170686 19333308 ~ 19335777 (-) True G118266
TU148225 lncRNA upstream 297304 19459926 ~ 19460509 (-) True G118289
AMCG00018729 mRNA downstream 1957 19149225 ~ 19153064 (-) True AMCG00018729
AMCG00018727 mRNA downstream 6938 19118296 ~ 19148083 (-) True AMCG00018727
AMCG00018728 mRNA downstream 66557 19078849 ~ 19088464 (-) True AMCG00018728
AMCG00018721 mRNA downstream 83022 19058777 ~ 19071999 (-) True AMCG00018721
AMCG00018722 mRNA downstream 98986 19051938 ~ 19056035 (-) True AMCG00018722
AMCG00018733 mRNA upstream 19117 19181739 ~ 19195208 (-) True AMCG00018733
AMCG00018738 mRNA upstream 165359 19327981 ~ 19333242 (-) True AMCG00018738
AMCG00018741 mRNA upstream 183430 19346052 ~ 19349900 (-) True AMCG00018741
AMCG00018742 mRNA upstream 305146 19467768 ~ 19498979 (-) True AMCG00018742
AMCG00018749 mRNA upstream 417780 19580402 ~ 19603286 (-) True AMCG00018749
TU148096 other downstream 107444 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 680776 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 1551173 17603356 ~ 17603848 (-) True G117899
TU147639 other downstream 1898750 17226090 ~ 17256271 (-) True G117823
TU148412 other upstream 825052 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 915466 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 1281875 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 1327589 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 1440896 20603518 ~ 20605820 (-) False AMCG00018794

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000039_08311824_08317719.mRNA True 2083 mRNA 0.42 10 CI01000039 8311070 ~ 8317719 (-)