RNA id: AMCG00018728


Basic Information

Item Value
RNA id AMCG00018728
length 3615
RNA type mRNA
GC content 0.53
exon number 31
gene id AMCG00018728
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19078849 ~ 19088464 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAAAGTTTTATAAAAAGAAACGCCGAGTGACGCTGTCCTGTGATTGGCCGCAGAGCGAGGAGGTGGGCGGAGGCGGTATCCGGCTGAACATGGAGGGCGCCCTGACGGCCCGAGACCGTGTGGGCATCCAGGACTTCGTGCTGCTCGACTCCTACACAAGTGAGGTTGCCGTGCTCGACAACCTGCGCAAACGCTTTCGAGAGAACCTCATCTACacgtACATTGGTACGATGCTGGTCTCAGTCAACCCCTATAAGGAACTGGAGATCTACACCCCAAAACAGATGGATCTCTACATGGGAGTCAATTTCTTTGAGCTGCCACCCCACCTCTACGCCCTTGCAGACAACGCCTACCGCACCATGCTGACGGAGTACAACAACCACTTCATCCTGATCTCCGGGGAGAGCGGGGCGGGGAAGACCGAGGCCTCCAAGAAGATCCTGCAGTTCTACGCCGTGTGCTGCCCCAGCACTGAGCAACTGCACAGCGTCCGGGACCGCCTGCTGCTCTCCAACCCGGTGCTGGAGGCTTTTGGTAACGCCAAAACACTTCGGAACGACAACTCCAGTCGCTTTGGGAAATACATGGACATCCAGTTTGATTTCAAGGGGGAGGCTGTGGGGGGCCACATACTCAGCTATCTGCTGGAGAAGTCTCGGGTGGTGCACCAGAACCATGGAGAGAGGAACTTCCACATTTTTTACCAGCTGCTGGAGGGGGGTGAGGAAGAGCTCCTACGATGGCTGGGACTGGAGAGAAACCCACAGCACTACAGCTACCTGGTACAAGGGGAATGTGCCAAAGTGAGCTCCATCAACGACAAGAGCGACTGGCGGACCGTGCGCAAGGCCCTCTCCATCGTTGACTTCAGCGAGAACGACATTGAGCACCTGTTTGGCATCATCGCCAGCGTCCTGCACCTGGGAAACCTCCACTTCGACGCAGATGGCAAGGGGTATGCCACCATCGGCAGCAACGCAGGGGTGCGTTGGATTTCCAAATTGCTGGGGGTTCCAGTTCTGCTGCTACAAGAGGGCTTGACTCACAGGAAGATTGAGGCCAAAGCTGAGGAGGTTCTGAGCCCCTTGACTGTAGAGCACGCTTACTATGCCAGAGATGCCTTGGCCAAGGCGATTTACGGACGCACGTTCACATGGCTGGTCAACAAGATCAATGAGTCTTTGGCAAACCAGGACCCCAGGAGGAAGACAGTGATTGGGCTGCTGGACATCTATGGCTTTGAAGTCTTTTATATAAACAGTTTCGAGCAGTTCTGTATCAATTACTGCAACGAGAAGCTGCAGCAACTCTTCATCCAGCTGACCCTGAAGTCAGAGCAGGACGAGTACGAGATGGAGGGCATCGAGTGGGAGCCGGTGCAGTTCTTTAACAACAAGATCATCTGTGACCTAGTGGAGGAGAAACATAGGGGCATCATCGCTGTGCTGGATGAGGAGTGTGTGAGGCCAGGGGGGGCCACTGACCTCATCTTTCTGGAGAAGCTGGAGGAGAAGATGGGCAGTCACCCCCACTTTGTGACACACAAGCTGGCGGATCAGAAGACGCGCAAGACACTGGAGCGGGGAGACTTCCGTCTGCTGCACTACGCCGGCGAGGTCACCTACTGTGTCATCGGATTCCTTGACAAAAACAATGACCTTTTGTATCGCAATATCAAAGAAGTGATGTGCCAGTCTAAGAATGTCATTGTGAAGCAGTGTTTCTCCCCGTCAGAGCTGGATAACAGGAAAAGACCCGAGACGGTAGCCACCCAGTTCAAGAACAGTCTTGCAGGCCTGGCAGACATCCTAATGTCCAAGGAGCCCTGGTACGTGCGTTGCCTGAAACCCAACGATGCCAAGCAGCCAGGGCGTTTCGATGACGTGTTGGTGCGACACCAGGTGAAGTACCTGGGCCTGATGGAGCACCTGAGGGTCCGGAGGGCAGGGTACAAGCCTCTGTGCCCGGACACTTGGCCCCACTGGAGGGGGGTGCCGGCAGAGGGGGTGGAGCGGCTGGTTAAATATATCGGCTACAAGCCCGACGAGTACAAGCTGGGCAGAACAAAGATATTCATCCGCCATCCCAGAACGCTCTTTGCCACCGAGGATGCCTTTCAGATCTGCAAGAACAATCTCGCAACAAAGATACAAGCCAGGTATAAAGGTTACCGGGTGAAAGGGGAGtatcagaaaaagaaagaggctGCCACGAAGATCGAGAACTGCTGGAGAGGCGTGCAGGCCAGGAAGGAGCGCGAGAGGAGAGCGTGGGCTGTCAAGGTCATAAAGAAGTTTATAAAGGGCTTCATAAACAGGAACAAGCCCCTTTGTGACGACAACGCGGACTACGTGACGTTTGTTAGATACAACTATCTCAACAAGCTCAGAAACCACCTCCCCAAAGGCCTCCTGGACAAAACCACCTGGCTCAATCCCCCCCTCATGCTGGAAACGACCTCACAGATCCTGAGGAGGCTCTGCATGCGCACCATGGTCAGGAAGTACGTCAAGGGGCTCACACCCCAGCGCAAAGCCCAGCTGCAGCTGAAAGTGGTGACCAGTGCCTTGTTCAAAGGAAAGAAGGACGGTTACACGCAGAGTGTGGCCAAGCCCTTTGTGGACACCAGACTCGGAGAGCAGGAAATCAACATGAAGGTCCTGCAGATTGTTCGCAGTGAACGGATCAAGTACGGCACTCCTGTGGTGAAGTATGACAGGAATGGGTTTAAGCCGCGGCAGCGCCAGCTCATACTGACCCAAGTCGCGGCTTACGTGGTGGAGGACGCTAAGGTCAAACAGAGAGTCGAGTACTCTGCCCTCAAAGGCGTGTCAGTGAGCAGCCTGAGTGACGGCTTCCTCATCCTGCACGTGCCCTGCGAGGACAACAAACAGAAGGGAGACCTGATTTTACAGTGTGACCACCTGTTCGAGGCTGTGACGAAGCTCTGTGTGTTAGCCAACAAGCACAGCTCCGTCAAGGTTGTTCAGGGCAGTATCCGTTTTGCTATCCAGCCTGGGAAAGAAGGAATCATAGACTTCAGCACCGGACAGGAGGCCATGGTGTACCGAGCCAAGAATGGACACTTAGTGGTGGTTTCTCTTAGACCGAAGGCACGATGATTTGTAAGGAGTCGGGATGCATTTTGGAGCCCACAGACCAGACTGTAGCGACACTCTGTGCCCTTTGCATATTGACCATAGGGTCAGGAAACTGGCGACGGTAATTAGGACACTGTAGCAAGTGaaccatataaaatatattaatttcactTCGATATACACTGGATAATGGTCACCCtattataatgaatgtattgtCCATTGCAGAACCCACTGTTAAAGAAATCTGGTTGCCCAAGTTATTAATGCGGCCCAGCGTGTTGGTGCTGATCAGCTGAACCGTGGTAGAACAACCTGTTTCctcatggtgttttttttatatttcaatatagaGACACAGCCATGGCCACCTGACAGATGTCATGTAGACTGATTTTCACATAAATCTAACCACCTCAACACACAGCAAAAGGTTTTGAAAATAGTTGGATAGTACATTTTTGATAAGATTTCACTGCTTTCCATGTGTATTTTATGATATTAAAG

Function

GO: NA

KEGG:

id description
K10356 MYO1; myosin I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148054 lncRNA downstream 192865 18883059 ~ 18885984 (-) True G118147
TU148039 lncRNA downstream 236209 18837754 ~ 18842640 (-) True AMCG00018715
TU148005 lncRNA downstream 332029 18745382 ~ 18746820 (-) False AMCG00018703
TU148003 lncRNA downstream 345029 18733088 ~ 18733820 (-) True G118115
TU147980 lncRNA downstream 421315 18656465 ~ 18657534 (-) True G118100
TU148149 lncRNA upstream 90017 19178481 ~ 19178740 (-) True G118223
TU148165 lncRNA upstream 132833 19221297 ~ 19221632 (-) True G118238
TU148166 lncRNA upstream 136208 19224672 ~ 19227434 (-) True G118239
TU148198 lncRNA upstream 244844 19333308 ~ 19335777 (-) True G118266
TU148225 lncRNA upstream 371462 19459926 ~ 19460509 (-) True G118289
AMCG00018721 mRNA downstream 6850 19058777 ~ 19071999 (-) True AMCG00018721
AMCG00018722 mRNA downstream 22814 19051938 ~ 19056035 (-) True AMCG00018722
AMCG00018723 mRNA downstream 31132 19038557 ~ 19047717 (-) True AMCG00018723
AMCG00018718 mRNA downstream 142533 18924508 ~ 18936316 (-) True AMCG00018718
AMCG00018714 mRNA downstream 203233 18869934 ~ 18875616 (-) True AMCG00018714
AMCG00018727 mRNA upstream 29832 19118296 ~ 19148083 (-) True AMCG00018727
AMCG00018729 mRNA upstream 60761 19149225 ~ 19153064 (-) True AMCG00018729
AMCG00018726 mRNA upstream 66557 19155021 ~ 19162622 (-) True AMCG00018726
AMCG00018733 mRNA upstream 93275 19181739 ~ 19195208 (-) True AMCG00018733
AMCG00018738 mRNA upstream 239517 19327981 ~ 19333242 (-) True AMCG00018738
TU148096 other downstream 31272 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 604604 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 1475001 17603356 ~ 17603848 (-) True G117899
TU147639 other downstream 1822578 17226090 ~ 17256271 (-) True G117823
TU148412 other upstream 899210 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 989624 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 1356033 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 1401747 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 1515054 20603518 ~ 20605820 (-) False AMCG00018794

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059037 True 2139 mRNA 0.47 24 NC_007116.7 31965845 ~ 31981195 (+)
grasscarp (Ctenopharyngodon idella) CI01000071_01116766_01128579.mRNA True 3520 mRNA 0.44 30 CI01000071 1116495 ~ 1128579 (-)