RNA id: AMCG00018729


Basic Information

Item Value
RNA id AMCG00018729
length 1726
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00018729
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19149225 ~ 19153064 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAGCATTGGGGGTGATGTTATTAAAGAGAAGAGCAGGAGTTTTCATCGCATAAAAAGGATACTGCAGTTAAAACGAAAATGATTGGGCAGAAAACCATTAACTCTTATTTTGGCACCGTTACCAAGAAAAGGGAATTGGAAAATGAAACGGGAGTAGAGGTTACCCCGGTGAAGAAGCCCAAACCGGGAGGCGATGAGGCGCCGATTTCCCCTCCGTTGAGTCCGGAGCAGCTGGACCGCATCGAGAGGAACAAGCAGGCGGCTCTGGAGAGGCTCGCCGCCCGCAACGTGCCGCCTGGATTCGGGGAGAGCTGGCGGAAGGGGCTGAGCGAAGAGTTTAGCAAGCCTTATTTTATAAAGtGTTTGACAGACACTTTCTGTATTTCACAGGTGAAGGTAGTTATCCTGGGCCAGGATCCATACCACGGCCCCAAACAAGCCCATGGCCTGTGCTTCAGTGTTCAGAGGCCTGTTCCACCTCCCCCCAGCTTGGAGAACATGTATAAGGAGCTGACCTCGGATATAGAAGGCTTCGAGCACCCAGGACATGGGGATCTGACAGGATGGGCTAAGcaagGGGTTCTGCTGCTCAACTCGGTGCTGACGGTCCGAGCGCATCAGGCAAACTCCCAcaaggaccagggctgggagcAGTTCACCGACGCCGTGGTGCAGTGGCTAAACAAGAACCTGGATGGCCTGGTctttatgctgtggggggcctATGCACAGAAAAAGGGCCTTTCCATTGACAGGAAGCGACACCACGTGCTGCAGACTGTGCACCCCTCTCCTCTGTCTGTGTATCGTGGCTTCTTTGGATGCAGACACTTCAGCAGAACCAATGAGCTGCTCAAGAAGTCCGGGAAGAAGCCAATTGACTGGAAAGCGATGTGAGTGCAAGGCTGAAAATGGTCCAGAGATTTCCAGCAACTGTCTCCTGCAACTGTCCCCGCTTCAAGTAAAAAATGGACAACTGACAATCCTTTGGCTCGCAAAACAGATCACACTAGCAAATGCTTTCCTATgtcttttaatgcatttccttcTGTTGATAACTTCAATTTCAAATGGACCTTCGGTCAGTCATTGGAGttcaattgttattttgttccCGAGTTGCAGTAGGCAATTAATATAGGACTTGAATTTTAATGCATCACTttcaagggaaaaaaagttGCCAATAATTTTGTAAGGTGGTGGATTTCTCCAAACTAGAAAGTTTTCCATGGCAGCTATACAGTAGTAAAGTTTAAAGGcatccatttgttttgttttttacatttcaccCAAAGTTACATCTACCTCCTCCAATTACAGGGCACTAAATCAGCGATTAGTTTAAATACTGGATGAGAACTACATTGTAAAGAAGGGGAGTAGTTATTTTTGTTGAATAAGCTAAACTGAAGGAAGTTGCCCGGGTTTAACTTCCTTTCCCATTTTCTTCTGTATTCAAAAGTTACCTCCAATAAGACACCAACAAAAGGTAACAAATAACACTGCACTTGTAGCTATTTTTTTCTGTCCGTTGTCAAAAAACTTGGCATtgtaaatatttgcttttatttctgtctgtaagaatatacatgtttttttgttattatgaacatttgacaaataaaaaaatatataatttcaaaattcCTTGTATTGTGTTCTTGTTTACCCCAGCAGATGGATGCAGATTGTCTTAATCTTTAACAGATCTTTAAAGTCTT

Function

GO: NA

KEGG:

id description
K03648 UNG, UDG; uracil-DNA glycosylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148054 lncRNA downstream 263241 18883059 ~ 18885984 (-) True G118147
TU148039 lncRNA downstream 306585 18837754 ~ 18842640 (-) True AMCG00018715
TU148005 lncRNA downstream 402405 18745382 ~ 18746820 (-) False AMCG00018703
TU148003 lncRNA downstream 415405 18733088 ~ 18733820 (-) True G118115
TU147980 lncRNA downstream 491691 18656465 ~ 18657534 (-) True G118100
TU148149 lncRNA upstream 25417 19178481 ~ 19178740 (-) True G118223
TU148165 lncRNA upstream 68233 19221297 ~ 19221632 (-) True G118238
TU148166 lncRNA upstream 71608 19224672 ~ 19227434 (-) True G118239
TU148198 lncRNA upstream 180244 19333308 ~ 19335777 (-) True G118266
TU148225 lncRNA upstream 306862 19459926 ~ 19460509 (-) True G118289
AMCG00018727 mRNA downstream 1142 19118296 ~ 19148083 (-) True AMCG00018727
AMCG00018728 mRNA downstream 60761 19078849 ~ 19088464 (-) True AMCG00018728
AMCG00018721 mRNA downstream 77226 19058777 ~ 19071999 (-) True AMCG00018721
AMCG00018722 mRNA downstream 93190 19051938 ~ 19056035 (-) True AMCG00018722
AMCG00018723 mRNA downstream 101508 19038557 ~ 19047717 (-) True AMCG00018723
AMCG00018726 mRNA upstream 1957 19155021 ~ 19162622 (-) True AMCG00018726
AMCG00018733 mRNA upstream 28675 19181739 ~ 19195208 (-) True AMCG00018733
AMCG00018738 mRNA upstream 174917 19327981 ~ 19333242 (-) True AMCG00018738
AMCG00018741 mRNA upstream 192988 19346052 ~ 19349900 (-) True AMCG00018741
AMCG00018742 mRNA upstream 314704 19467768 ~ 19498979 (-) True AMCG00018742
TU148096 other downstream 101648 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 674980 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 1545377 17603356 ~ 17603848 (-) True G117899
TU147639 other downstream 1892954 17226090 ~ 17256271 (-) True G117823
TU148412 other upstream 834610 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 925024 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 1291433 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 1337147 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 1450454 20603518 ~ 20605820 (-) False AMCG00018794

Expression Profile