RNA id: AMCG00018730


Basic Information

Item Value
RNA id AMCG00018730
length 3177
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00018730
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19165886 ~ 19181728 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGATGACCTGTTCCAGCTGAGACAGCTCCCTGTGGTGAAATTCCGTCGCACTGGCGAGAGCGCGCGCTCCGAGGATAACGATGGCTGTGGAGAGCACGAGGTTCAAATCGAGGGCGTGCGGGCAGCATTAGAGTCCGTGGAGCTGGGCGATGGCGCGGCCGTTCCCAGGGAGTTCGCCAACCCTACCGACGATACGTTCATGGTGGAGGATGCGGTGGAAGCGATTGGCTTTGGAAAATTCCAGTGGAAACTCTCCGTTCTCACTGGACTGTCATGGATGGCAGATGCTATGGAGATGATGATTCTGAGTATTCTGGCCCCACAGCTGCACTGCGAATGGAGGTTGCCCAGTTGGCAGGTTGCCTTTCTCACCTCGGTGGTGTTTATTGGGATGATGATCAGCTCTTCTCTTTGGGGAAACATATCTGACAAGTACGGGAGAAAAACAGGCCTGAAGATGAGTGTGATGTGGACGATGTACTACGGCATTCTGAGTGCGTTTGCCCCTGTCTATGGCTGGATCATCTTTCTCCGGGCGTTGGTGGGCTTCGGAATCGGAGGGGCGCCCCAATCGGTGACACTGTACGCAGAATTCCTGCCGATGAAATCCAGAGCCACTTGCATTTTATTGATAGAGATATTCTGGGCACTGGGCACCGTGTTCGAGGTCCTCCTGGCTATCATGGTGATGCCCACGCTAGGCTGGCGCTGGCTGCTGGGCTTCTCCACTGTGCCCCTGGCCATTTTcgctgtgctgtgctttTGGCTGCCGGAGAGCGCACGGTACGACGTGCTTACGGGGAACCAGGACAAAGCGCTGGCCACACTCAAACGCATCGCCGTGGAGAACGGGGTGCCCATGCCACTGGGCAAACTGATTGCCGCCAGACAGGAGGACCGTGGGAAGATACAGGATCTTTTCTCCCCGCAGTTCCGCTGGACCACTTTGCTGCTGTGGTTCATCTGgtTCTCGAATGCATTCTCATACTATGGTTTGGTCTTGCTGACCACAGAGCTATTTCAAGCTGGAGATGCGTGTGGGGTCTCCAAGGGCCAGAGGATGGAGCCCAGGTGTAGTATGGAGTGTAAATACCTGACATCTGATGACTACAAGGACCTGCTGTGGACCACTTTATCAGAGTTCCCAGGCTTGATAGTGACTCTGTGGGTCATCGATCGGATCGGGCGCAAGAAAACCATGGGTCTCTGCTTCCTCATCTTCTCCCTCTGCATCCTGCCATTGTTCGCCTGCGTCGGGAGGACAGCCCTTACAGTCTTCATTTTCATCGCAAGGGCCTTCATCGCTGGGGGATTCCAGGCAGCTTATGTTTATACCCCTGAGGTGTACCCCACAGCTACCCGGGCACTGGGTTTAGGGACCAGCAGTGGGATGGCCAGGGTTGGCGCTCTTATCACCCCCTTCATCGCGCAGGTGATGCTGGAGTCCTCGGTGTACCTGACGCTGTCGGtatactgctgctgctgcatccTGGCTGCCATCGCCTCGTTTGCCCTCCCCATCGAGACCACCGGCCGGGGCCTGCAGGAGTCCAGCCACCGCCAGTGGGGCCAGGAGATGATGGGCAGGAACTCTACCAGCTCCGGGGGCATCCCTCAGTCGAGCTCGGGCTCCCAGGACTAACAAGGGGTACAGCACTGGACAGGACTGGGGCTCAGAGAGGGCATTACCTCCCCGCCACCACCTCCGCAACTGCCTCCCTGGAGTATCACCTGGTCTGTATCTTGACACCATGGGAGGGAGCCTGTCTGcgtgcctgcctgcctgtgcaatgtgtttatttccgTATTTGGTTTTTGAATTTGTCATCCACCACTGCTGCTGTAATGACCTTGCCGATGCGAGTTCTATCGCGACATTTACTGGCAAAACAGAGTTCTGTGTCCTCCCAGGCCTCGGTGCCACAGGGGGAAAATTGCCCTGTTGAGAGAAGGGTTACGTGTATACACCCGAGGGGCAGTAAAGTAGTAAAGACTAATTTGTCACTGCATACACATCTCCCTATTCTCTAGCCACTGTGTATTCAGAGGCCTCTGTGAAAGAAGGCTGTTATGGGACATTCAGAGGGTAATGTGTTATCAGATAACTGATTCTAGGAACAAACATTGCAATCTACTTCTCATTATCAAACGTGGGAGAGATcgaaaaatcatatattttatgaaaacagCCGGCAGTTGCTCGGGGAAATCCTGTACTTCACTAAATAACGTTAAACAACCTAAAAACAAAGAATTTGGGAATAAATGTGTTCACTCTTTTGGTGTTATACCATTCCACTTTCTACCTGAAGAAGACGCCAAAATTGTTACCTAATTGGATATTcataaagaacaacaacaaaaacagaaggcgggcattacttttacttttgaacAAATCCTGTATTCATTCTCAATTAAATTACAGTGTTTGAAGACACCTTGAGGTCTCACCATCCTTTTAATCACAATAGAAGGCTTCATCAGCAGGCCATGAGACCACTGTAATAGTCACAGATGGCCTCTATACCATTGTAAAGACTTGGCTGTATTAAGATTAAATAGAAACGTTACCCATATAGGTGATTTGATTTTCTATATTAGACtagttaaacaaaaatgtcatgCCTGATTGTATCTGGGcaaaaaacatgctttgaaaCAGGAAaactgtatgtactgtacatgcTTACAAGAATATCTCAACAAAGTAGGCATATTTATACAGGTCTCTAGTCAATCTTATTGCAGTGAACAAGCACGCAGAACTCTAGATGTTTTAGGTCAATACTGGCACTCTTCATGCCTATTAAGGTTACATGTCCTGCCCTCTTGAACACAGATTTCAAGCTCAAGGTAGAAGGCACACATGCTGTATTGTAGATGGgaataattacttttcattgtGGGACAAACGTgagttgttttttagttttttttttctttgtccatGCTGTTTTTTGAAAAAGGGTTTTGTCCCCTTTGCAAGTAATGAGTCAAAACAAGGTGTTCTGGAAATTCCTGCACTTCTTGTCATGAAAACTGTCTAATACATGCCTGCCTTTGCAATTTATTGCTGCATTAAGTGTCTGTACACAGATTCTTGCCACTGCactgtatgtaaatgtgtatgATACAATGAATTAtgttataaaaaagaaaaagagcatCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148059 lncRNA upstream 256930 18906406 ~ 18908956 (+) False AMCG00018717
TU148025 lncRNA upstream 333643 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 435074 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA upstream 489660 18674274 ~ 18676226 (+) True G118043
TU147877 lncRNA upstream 947787 18217803 ~ 18218099 (+) True G118005
TU148164 lncRNA downstream 41646 19223374 ~ 19227433 (+) True AMCG00018732
TU148221 lncRNA downstream 274414 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 286095 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 297963 19479691 ~ 19479956 (+) True G118291
TU148240 lncRNA downstream 395236 19576964 ~ 19579031 (+) True G118304
AMCG00018724 mRNA upstream 11289 19153458 ~ 19154597 (+) True AMCG00018724
AMCG00018725 mRNA upstream 49621 19108376 ~ 19116265 (+) True AMCG00018725
AMCG00018719 mRNA upstream 87109 19073104 ~ 19078777 (+) True AMCG00018719
AMCG00018720 mRNA upstream 115247 19047788 ~ 19050639 (+) True AMCG00018720
AMCG00018717 mRNA upstream 256955 18894335 ~ 18908931 (+) True AMCG00018717
AMCG00018731 mRNA downstream 24327 19206055 ~ 19222946 (+) True AMCG00018731
AMCG00018732 mRNA downstream 41440 19223168 ~ 19234351 (+) False AMCG00018732
AMCG00018737 mRNA downstream 93181 19274909 ~ 19282966 (+) True AMCG00018737
AMCG00018734 mRNA downstream 107461 19289189 ~ 19296001 (+) True AMCG00018734
AMCG00018735 mRNA downstream 118220 19299948 ~ 19306740 (+) True AMCG00018735
TU147936 other upstream 444543 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1183583 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1183772 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2096216 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 4209306 14954564 ~ 14956580 (+) False AMCG00018602
TU148213 other downstream 266898 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 789411 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1077649 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1192268 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1332432 20514160 ~ 20514491 (+) True G118623

Expression Profile