RNA id: AMCG00018731


Basic Information

Item Value
RNA id AMCG00018731
length 4490
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00018731
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19206055 ~ 19222946 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCAGCATCTCATTTCCTTCACTGTACACCGAGTCCTTGGAGCTATCTAGTCCTTGGGTCAGCCTCCGAGCAAGGTTAcacagagatgagagagagacagatgggtGTATGTGCACGGAATTCAGAGCTCCACTCTCGGGCTCTGTGAAaccgcctttttttttttttctttgctcttttctcgtctctctcttttttaaaattgtacacttctgcatttgcttattttctgtCTCGGTTCTAGTCAGCTTTGTTATTCTTAACCGTGCTCTGGGACAGCAGTTGCGAGTCTTAAAAGGAAAGATAAGGTGATATCCTTTAGTGAGCACTAGACAGAGCCGCTGACAGGGTAATAAGATTTCAGCTACAGGAGTATCGTGGTGCCAGCTCCTGAAGAGGGCAGGTTAGCTCTCCCTGCCTCCAGCATCGCATCTGAGTGATTACTGGCAACGTTGCTTTAGTCCGTGACTCATGCGGTGACATGCATGTCAAAAAGCTCCTGCGAAAATTAAAGCGTTAAAGGAATTGGATCCGGAGAAGGGCTGGATTTCTGcctcaagtgtttttttttttttcttctatgtgCGTTAGAGTGGATGCTGCAGGTtggaacaaacaaaccaaactaaaatatattttgtctgtgGAAATTAGACTTCTGGAAAGTGTTTCTTCAGAGAGAGGCTGACAGGGGTGAGAGATTTTCCTTCGGAGAAGTGggtgcttttgtttctttcaaactGAAACTGAGTCGGAAGTCTCTAAGCTTGTACGGTTAGGATTTATTGAGACAGGTCTCCAGGGATAAAAGTTGAGATGCTTGGTTAAGTACTATGGGATAACCATGTCTTCATTTAAAAGCTTACTTGCTTTTGAACAGCCTTAGcctttttttcaaatgaagtgCGCTTTGGaacatttgtaatttgctaAGGGCATCATTTATTGAGACACCGCAGATTGCTAAATTTCAATCAGCTTGCTGAGATCAGTTGTACCCCTAGGCCATTCACAGTGAGCACTGCAGGCTCCTTGTGCACTCACTGCAAAGGGGATATTTGACACAactaacacaacacaacaacgagACTAGCTACTGTCATCTTGTTCAGAGCAAGCTGGTGCTCCCCTACACCTGGGGTTTGAAAACCCCTTTTCTTCTGTGGTTTATAAAGAAAGATTGGCcgggaaaaaaaacaggatgcaTCTGGTAGTGGAATCCTCACAAGAAGCCGTGCTCAAGATGCTGCCCTATTTTGTGGAGAATGCTGTCCTGACTCAGAAAGAGATCTGCCGAATCCTGAGTGAGAGCTTCTTCATGGTGAAGGGAGCGGCTCTCTTTCTGCAGCAGGGAAGCAGTCCACAGTGTCAGAAGGTGCACCCCCATCACAAAAATGCAGGTGATTTACCTCAGCACCTTCAGGTGATGATAAACCTTCTTCGTTCAGAGGACAGAATTAAACTGGCTGTGCGTTTAGAAAGCGTGTGGTCAGACCGGGTGCGGTACATGGTGGTGGTTTACACCAGCGGCCGTCAGGACACTGAAGAGAACATCCTACTGGGCATGGACTTCATCAACAAAGACAGTAAAAGCTGCTCCATTGGCATGGTGTTGCCATTGTGGAGCGATACCAAGATTCATCTGGATGGAGATGGAGGCTTCAGTGTGAATACAGCAGGAAGGACTCGTATCTTCAAGCCGGTCTCTGTCCAAGCCATGTGGTCGGCTCTACAGATCCTGCACAAGGCCTGTGAGGTGTCCCGCAGGTACAACTACTTCCCAGGAGGAATGGCTCTGACCTGGATGGGCTACTATGAGAGCTGCATCGCATCTGACCAGAGCTCTATCAACGAGTGGAACGCCATGCAGGACCTGGAGACTACACGGCCGGACTCCCCCGCCATGTTTGTTGATAAGCCCACAGAGAGGGAGCGAACAGAGTGCCTTATTAAAACCAAACTCAGGAGCATAATGATGTTCCAAGATCTGGAGAATGTGACCTCCAAGGAGATCCGTAGCGAGCTGGAGCAGCACATGAACCGCAACCTGAGGGAGTACAAGGAGTTCATCGACAACGAGATGCTGCTCATCCTCGGACAGATGGACAAGGCCACGCTCATTTTCGACCACCTCTACCTGGGCTCTGAGTGGAATGCCTCCAACCTAGAAGAACTGCAGGATTCAGGTGTTGGTTACATCTTAAACGTCACGAGGGAAATCGATAATTTTTTCCCGGGCATGTTTTCCTATCACAATATACGGGTTTATGATGAAGAAGCCACAGACCTACTGGCGCACTGGAATGACACCTACAACTTCATAGTAAAAGCTAAGAAAAACCACTCTAAGTGTCTGGTACACTGCAAGATGGGTGTCAGCCGGTCTGCGTCGACAGTCATCGCCTATGCAATGAAGGAGTATGACTGGTCTCTAGAGAAAGCATACAACTACGTCAAACAGAAGAGGAGCATCACTCGCCCCAACGCCGGCTTCATGAGGCAACTGGCGGAGTACGAGGGGATCTTAGACGCAAGCAAACAGCGGCACAATAAGCTGTGGCGTCCCGACTCCGACTGCGACCTCCCCGATGGCCAGCAGGCATCGGCCCAGTGCTGCAGCGCGGACGAGCCTGGAGACCTCACCCCCGAGCTCGGCATCCCTGCGTCCGACGAGGCCTGGGGCGGGGATGAGGCCAGACCCTCGCCCTGCCGGACCATCGGGGTGGAGGTGGACCCCGCCGACCCGCCCAATTACAACTACTACTTTCGGAGGCTGTCGGACTCGGCTCTGGACAGCGACCCTTGCACCCCGGTGCGGGCCCCCCCCTTGCTGGACATGGAGCGCGTCTTCATTGAGATCGAGGATGTGGAGCGGGACGCCCTGCTGGACGATGAAGGCTTCGAGGCCAGGGAGTGCCCCCTGCCCCCATTCAGTTTACCCGGGGAGGGCACTGCTGCCCAGACCTGCTGCCGCCTGGACCCCCTAGAGGCGGACATGCGTATGAAGCTGGAGTTCGGCAcggtggaggaggaggatgaggaggaggaagaggaggagcaggaggaagcGGAGATGGTGTCGTTGACGAGACCAGGagggggtggaggaggaggaggaggagggggtggcgacggcggcggcggcggcggcggcggaggGAGTGAGGCCATGCtggaagaagagaaagaagacAGTGGGCCGGCCTCTTGCTCCGCCTCCTTGGCCAATCGGAACAGGTTCAACAACGAGaatgccaacaacaacaacagcctcGGCAGCAGCAAAAGGAGCTGTCCACCTGGCTTTGACGACAGTGCTAACACCAGAAACACCTATAAAATCAAGCCTCCATACCAGCCCTGTACAGACTGCATGCTTTCCCAGCGCTGTGAACCCATGGTTGTGGAGCGCGCCCATCGCCTTAACCCTCTGCATATGTGTAGCATCCCGAACATCTGCGTACAGAACTCCGGCTCCGTGTCAGCTGATCATGCCTCCATTTCTAGTGTTTCGCCCTTGCCTGGGCTGCGTAGGGCCTCCTGTAGTCACTGCTCACCCAGCAACCGTGCCAACTGTGGTGTGTCGCCATCAGCAACATTGATAGAGGCCTATCGACATCGCCAGGTTTCACCCATGAACTGCGATGAGCTTCCCAGAGACCCACACAGACACTTAGAGGCTGATTCCATGAGCGAGTTGTCTGAGGCGGAGCACAAGAAGGCTGCTGTCAAAGCAGCCAAAGACCTGAGTCTGCTCAAGCTCAGTCTGGAGGCAGAGAAGCCCATGGTGCCCAGTTATGTGATGCAGCATCAGGAGTCCATCATGCAGCTCCAGAAGGCAGGGCTGGTCCGCAAGCACACCAAGGAGCTGGAGAAGCTGTCGAGCCTTTCCCTGGACCTCAGCAAGGCAGGCAGCCAGCTCCCAGAGCAAATGGACACGTGCTCCGAGGAGATAGACGGCATGGGGCTGGAGGAGGAAATGGAGGTGGACTCCACTTCTGTGACGGAGACATACCTCAAGACCTCCACGCCGTGCGGTAGCCGCCTTGATGTGGCCGAACCCCTGACCAACGACCTCCTGAAGACCGTGGGTGGACTGACGCCCACTTCCTCGCCGCACGGCTCCACGCTGACGCGCAGCTCCAGCAGCGACAGTCTGCACAGTGTGAGGGGGAAGCCAGGGCTGGTGAAGCAGCGCGCCCAGGAGATTGAGACCAGGCTCCGTCTGGCCGGACTGACCGTGTCTTCCAAGCTGAAGAGATCCAACTCCCTGGCCAAGCTCGGCAGCCTCACCTTCTCCTCGGAAGACCTGTCGTCGGCCTGCTCCTCTTCGGAAGCCAACACCATCTTGTTCTCCACGTCTGCTGAAGTCAGTAACGGCGAGGGCTGGCTGATGTCAGGCTCCCACACGATCAAAGGCAGCCTGAGTCATGGCAGCTGGGCGAAACcactgttagggaacatttctGGTTTTCCTCCTCAGAGCTGA

Function

GO: NA

KEGG:

id description
K05766 SSH; protein phosphatase slingshot

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148059 lncRNA upstream 297099 18906406 ~ 18908956 (+) False AMCG00018717
TU148025 lncRNA upstream 373812 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 475243 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA upstream 529829 18674274 ~ 18676226 (+) True G118043
TU147877 lncRNA upstream 987956 18217803 ~ 18218099 (+) True G118005
TU148164 lncRNA downstream 428 19223374 ~ 19227433 (+) True AMCG00018732
TU148221 lncRNA downstream 233196 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 244877 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 256745 19479691 ~ 19479956 (+) True G118291
TU148240 lncRNA downstream 354018 19576964 ~ 19579031 (+) True G118304
AMCG00018730 mRNA upstream 24327 19165886 ~ 19181728 (+) True AMCG00018730
AMCG00018724 mRNA upstream 51458 19153458 ~ 19154597 (+) True AMCG00018724
AMCG00018725 mRNA upstream 89790 19108376 ~ 19116265 (+) True AMCG00018725
AMCG00018719 mRNA upstream 127278 19073104 ~ 19078777 (+) True AMCG00018719
AMCG00018720 mRNA upstream 155416 19047788 ~ 19050639 (+) True AMCG00018720
AMCG00018732 mRNA downstream 222 19223168 ~ 19234351 (+) False AMCG00018732
AMCG00018737 mRNA downstream 51963 19274909 ~ 19282966 (+) True AMCG00018737
AMCG00018734 mRNA downstream 66243 19289189 ~ 19296001 (+) True AMCG00018734
AMCG00018735 mRNA downstream 77002 19299948 ~ 19306740 (+) True AMCG00018735
AMCG00018739 mRNA downstream 103533 19326479 ~ 19327879 (+) True AMCG00018739
TU147936 other upstream 484712 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1223752 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1223941 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2136385 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 4249475 14954564 ~ 14956580 (+) False AMCG00018602
TU148213 other downstream 225680 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 748193 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1036431 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1151050 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1291214 20514160 ~ 20514491 (+) True G118623

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060544 True 2377 mRNA 0.52 15 NC_007116.7 31918809 ~ 31928913 (-)
grasscarp (Ctenopharyngodon idella) CI01000339_06770289_06776849.mRNA True 2955 mRNA 0.51 15 CI01000339 6770085 ~ 6776849 (-)