RNA id: TU148164


Basic Information

Item Value
RNA id TU148164
length 4038
lncRNA type sense_over
GC content 0.42
exon number 2
gene id AMCG00018732
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19223168 ~ 19234351 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taattttaaaagtaaagaaagaaaaagcttttaatgAAAACTGTTATGAAGGGGATGGTTTTGTTTAAGGCTTctcctttctgttttgttttcctcaagtGGTACTCGATAGTTTATGACTTAGTGTTTGATGTAATGATTAGACTGCATTTAATATCTGTTATTTGTAGTATTCAATAAGGCTTTCACCCTTGGCCATGTGGAGGAGACAAATAATGATCTTTATCAGCAGCAGAGTAATTAACCATGCATCTATAAAATCCTTTTCACTCTCATGACGTTCACAGGGAAGATTTCGCAGTGTAGTACGATTTATGATTTTATTCCTAAGGGAGGCTGTTGGTCAGGTTTGAACACAACAGTTGGTCTTCAGCACAAAAACTGACACAAGCTTTTGAGTTGTGTATGCAGACGTCACAATGAAGCAGGCAAGACCAGACAGCACAAAATGGGGTACGTACCTGTATCTCCTGTATTGGAAACTTTCTAGATATGTAAATCGCATTGTATTCAGTGCAGAAGGCGATCAGCTGCCCAGGTCCCCCATTAACATTGTGCTCTTCATGCTCAGATATAAATAACGCCCGGGAATAATGTGAAGTCCATCCAAGCCATAGACCTGCAGCCATTTTgcttttccttctctttgttAGCCACTTCCATTATATATTGGGCAGAGCTCTCATGCAGAACTCCAGAGCTGTTCTCCATTTCAGATCATACAGCCGTTCAAGctaaaaaagacacacacacacacacacacataaacttAATCCTAAAAACCTCCCTGATCATTTTCAGTAATTAATAAATTCCAGGACCATTCAATCTCTTGTTTAAAGAGGTTTTACTTGTATTGTTTCCTGGGTGCAAAACTAGAATAAAGTAGTCAGGCCTGATTGGTTACAACAAGAGTTCAGGACCGGGGTTAGTGAGAATACATTTGCTGTGTTCAAGCATCGACACCCACAGCTtagggcagtggttctcaaacctgtcctggagtaccacctaccctgctggtttttgttccaaccaagctctcaattacttaatttaacccttgattgaagtaatttgattaaatttgactctttaaattgtgtaactgataaaaagttggttccttaatattttccttaaacaatttcatacttaacttaaaactcctactgttaaaaataattaaaaggctgtAATTAGGAAAttgtttgttcaattaagggttcaattaagtcattgagagcttggttggaacaaaaaccggcagggtaggtggtactcaaggacaggtttgagaaacACTAGCTTAGGGGGATAAAGCTGCGTTCTTTATCTAAACGGCCTCGGTGGCAGTAGCTGCTGAAGTGGCATCAGAGGAGATGTTTATCTACTAATTCGGCAAATCCAGCTGCACAAAGACCCATTCAtattccaaacacacacatatccaTTTTAAAGTGTAACCACTCTGTCATGACAGTACGTTTCTAAAGATCAAATCCTAAAAGGTAAAGAACAGCAGCAGTTTATTATTTCTGTCACACACTGGATCACTCAAGGGTTCAGGGGAACCAGGGGTTGATTTAAAGCAACGCGAGTGTCATCTCTTCAGAGACGGCTGGACAGTTAACGATCGTCTGTGTTTAGACTGGGGAggattattttgctgtatgGGTCGGGTGTGCTCTCGGATCAGAGGTACGATGCCTATATTTGCATGCTTATAAGTATTCAGAAAGGAATTTGAATCTCCCTCTATTCATTCAACCCTGGTGTGTTATGCCCTCATCAGTACACACAGCCTGCATTCCCTCTGAAATTCAGTCTTGTGCCCTGGTTGGCTTGTTTGGTACTGAACTGTCACCTGGAGTAACTCTGAGAATGTAAGATTGGTCGGCTAGGATGATGACATTGGAGTTGTCTCTCCACACGCGTGTTCTTGTCGGTTCATTATCGCATTTACAGTGTCGGCTCACTTCTGGCAGATGGTTAAACTCACAACAGCACAAACTCGCTTCAGACACCTGATGAAAACCAAACGTCTCTCTTTCCCGGAGTCTCGAGCGCAGAATGTTTTACCTAGAGTCAGAGCGTGTGAACTTTACTTCGGAAAGACTTTCAGATGTATCGAGCAAGGAGTGCATCGGACCTGTGCCCTCTCGGTTTCCCGAACCTGCTGATTTGAAACTCATTTGTTTTGCCTGTGAGGTGACGGGCTTCGCCATCCTTGAAGAGTCTGTGATGTGACAGTCCACATACTACGCTATACAGACAGTCCTATTCTTTCATGTCATTCCAGATGTGTAGATTTTTCAAGTCAcccaatgtttttatttatttatttatttattacttttgtatttattctgtttatcGGCACATAATATGCAAGTCTGTTCATAGGAATTTTGTATGGAACCTAATGCTATTCTGCCATTtacttttgatttagatttttttgtaccATACACTATGCAGTTAAATCAGTGTATTACAAGTGTGTAAGttctatatgtgtgtgcatgcgagTGTAACACAGACGTTACATGGTtactgtgaaatatttatataaaaaataataactaagaACTGCGTGGAAATTAACGAATGATTTGGAGcaatgaagactctgtatacATGCGTGTATACATTCCCTACCTGTATACATGTGACACTGCAGAGGTCTGGTCTCTAAGAGAAGTGGTATCAGGATGATGTAATATGTGCAGTGAGTTCAGGTTGCACTCCTGATTGGTTTGGACACTTTTTGTCAAGCAGCTATTTGCTCAATTTTAatatatgattgtgtgtgtggaataatatatattattcctacatacgcatatatatatatatattgtatactggCATACACATACAGAATGCATGTATGTGagtttatctatatatatatcaaaacaaaTCTATGGTCAGAGTGGTGCTGTAGTGGTTATCATCTTGAGTTTATTCCTAACACTTTGGCCAtacaggctgtggtcactgctGCAGAACATGATCAGAGAGCTTCGTTTGGTTGCTGCATGTTTGGCCCTGGAGGAGCAATGGTCGAGGCATCCCACTTCTCTGTTCCCAATCTCATCGCTCTAACCCAGTCCTGTTCTCCAGTTCTTCACTGCAGGGCCCGCCGTGTCACCCCACAGAGCTGCGGCCTAATTCGGTGGTGTGTGCTTTTGCTTTGCCAATGACTTGTGATCAAGCTATCGCGATGTGAATCAATGCCAACAGTGCTGAAGTCTAAACTGTGTCCTGGAAAGTGTAAGTGTTCCCcctcagccccccccccacgccATTGATTTCAGTCCCGATGCTATGCACTGTTCAATGTTGTTGCATGACTGCCGCCGCCGCTGCGTTGTTTCACTGTCGTCGCTGTTGCCGTTGGTGCTGTTGCTGTCGTCGTCGCTGTTCCGAtttatgattttgtattatatttacacataaGTGCCTTTACCCATGATACAATAGGCGTTGTGCTGTATGTGGGCCGTTGTCGCGCTCTTGGCTGTCCGGGTCTCTGCAGATGATCCCACCGATGGAGTTCAGACGCCGTGGCAAACGCCTggtccatttttgtttttatttgtctgtttacgggggtggggggggggagtcaGGTCATGGGATCGTGTTACTGAACTTCACTGGCATCCGTGCAGTGTCCATTCTCTTAATCTACTCACTTGACTTGTTAGCCATACTTGCCAATTTGCTTTTGCAGTTACAGTGGTTGTAGTTGGAGCAGATGTCTTTGACCAAAGCTGTCCACAGGAGTTCACAGGCACCACGTAGAAGTTACTGAAACGGATGGTTTGGGAAAGAGGTTTACAGAGTTTTCACACACCTTGAATGTCTATTAGAGCACAGGACTAGCACAGTCTATATCTGGCCATACTGTCTACTCTTCTTTTCAACAGACTGCTTGATCAAGGTTTCTGTGGGTCCTTCATGGAAAAATaagaatcaataaaaaaataaatcaataaaggaTCACATTAATAGTGACTTTTTCTTTNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148059 lncRNA upstream 314418 18906406 ~ 18908956 (+) False AMCG00018717
TU148025 lncRNA upstream 391131 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 492562 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA upstream 547148 18674274 ~ 18676226 (+) True G118043
TU147877 lncRNA upstream 1005275 18217803 ~ 18218099 (+) True G118005
TU148221 lncRNA downstream 228709 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 240390 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 252258 19479691 ~ 19479956 (+) True G118291
TU148240 lncRNA downstream 349531 19576964 ~ 19579031 (+) True G118304
TU148377 lncRNA downstream 766693 19994126 ~ 19994329 (+) True G118410
AMCG00018731 mRNA upstream 428 19206055 ~ 19222946 (+) True AMCG00018731
AMCG00018730 mRNA upstream 41646 19165886 ~ 19181728 (+) True AMCG00018730
AMCG00018724 mRNA upstream 68777 19153458 ~ 19154597 (+) True AMCG00018724
AMCG00018725 mRNA upstream 107109 19108376 ~ 19116265 (+) True AMCG00018725
AMCG00018719 mRNA upstream 144597 19073104 ~ 19078777 (+) True AMCG00018719
AMCG00018737 mRNA downstream 47476 19274909 ~ 19282966 (+) True AMCG00018737
AMCG00018734 mRNA downstream 61756 19289189 ~ 19296001 (+) True AMCG00018734
AMCG00018735 mRNA downstream 72515 19299948 ~ 19306740 (+) True AMCG00018735
AMCG00018739 mRNA downstream 99046 19326479 ~ 19327879 (+) True AMCG00018739
AMCG00018736 mRNA downstream 105057 19332490 ~ 19345758 (+) True AMCG00018736
TU147936 other upstream 502031 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1241071 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1241260 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2153704 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 4266794 14954564 ~ 14956580 (+) False AMCG00018602
TU148213 other downstream 221193 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 743706 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1031944 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1146563 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1286727 20514160 ~ 20514491 (+) True G118623

Expression Profile