RNA id: AMCG00018740


Basic Information

Item Value
RNA id AMCG00018740
length 2820
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00018740
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19373472 ~ 19482092 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGCCAGGGGACGCGCACTCAGGTCGTCACTGTCCAGCAGTGGCCCTAGGGGGCCAGCAGTGTCAGTGATAAGGGTGGACACCAACAGGCTAGGGAACGAAGGCGGTGTATTAGGGAGGGAGCCCCTGAAAcagctcctccaggagcagCGGCTCCTTGGGGCTCCACATAGCGCAGTGAGTGCAGCCCCTGTGCGCCACGCAGACGCTCTGCACTCAGCCACCTGCCCTGCTGCAGACCCAGTAGGCGGACCAACTGGTGAGCCGGGCCACAACCAGCAGGACGCCGAGGCAAGAGAGGAATCCGTGAAGCCCTCACTGTCACTCTCCAAGCCCGAGGCGTCCCCGGTGGCTGCCATGATGCTCCAGCGTGGAGCCAAACCTTttcccagTGACAAGACCAGAAGCGGACAGTTGAAGAGCAACAACAGCTTCCTCTCCTTAGCTTACAAGTATCTCGTCTGTCACTGCTCTGTGAAGGGGTTTGCAACAAAGCATCCAGTTGAGGTTTCAATGCTAGGATACGCTGTGGCCCAGTGGGACAAGAACGGCCGAGGGCGGAATTGGAAAGAGCAGGGAGATGTTAACCTGGCCAATAACCGGCAGCAAGTCACTCGGCaaaattgcattaataaatCAAAGTCCCGTGCCCTACTGGAAGCAGCTCAGTCCAACACTATGAGTATAGTCGAGAACTCCAGGTTGCACGCCTGGTTAGATGGGGTCACACTCATGCCCACTACTGCCATGAGTCTCCCTCATGACGAGAGGGTCACAGTGACAAGAGAAAGTGACTTTGTCTGGACTGCCACGGGGAAGGAAACTGGGTCACCTGGGAATACAATCCAGAAGAGAAGAATCCACTACTATACTGATCTAAGGATGAATGTTACAGAGAACTATGAGTACATTGACTACTCTTTTCCGACCCATCCACCAACGCCAGAGGATACCTCAGATACCTCACCTCTTTTACCACGGCCAGTGAAAATTATACTTCTCTTGCTCTACATCACCACCTGTGTACTGGGGCTGCCTGGGAATGCCTTAGTGATCTGGATAACTGGCTTCAAAATGAAGCAAACAGTCAACACCATCTGGTTCCTCCACTTGGCCATTGCTGACTTTCTATACTGCACTTTTCTGCCCATTCCCATCTATAATCTAGTCAACGATTTCAACTGGGTCTTTGGGCTGCACATGTGTAAGGCCAATTCCTTCATACTGTTGCTCAACATGTACGTCAGTGTCTATCTCTTGGCCATTATCAGCTTTGACCGCTGTGTGTTAGTTATTTTCCCAGTTTGGTCGCAGAACAGCCGTACGGTGAAAAAGGCCACTGGGCTCGTTCTGGCTGCCTGGGCTGCCTCCAGCCTTGTGAGCATCCCCTCACTTGTTTTCCGTCACATCGTTCCTTTGGGAAATGGGATAACCCGTTGCTACTACAACTACGAAACCCCCTTTAATCACCAAGTGGTCGTATTCACCCGGCTCTTTTTCAGCTTTCTCCTTCCATGTGTGGTTATACTGGTTTGCTATGGCATCATCATGTGGAAATTAAAAACCAGGCACCTGGCCAAATCCTCCAAACCGTTTAAAATCATCCTGAgcattattttcacttttttcatcTGCTGGGTGCCCTTTTATGTAGCACAGTTATTAGAGATATTCTTCTGTAAAGATGGGGAAAGGTcgtgctttattattattcctgttgTGTCCTGTGTTGCTACTGTCAACAGTTTTCTCAATCCAGTGTTGTACGTTTTCATGGGCTCAGACTTCAGAGACACTCTCAAGCAGACCGTTCGCTCCAGGATGGAGAGCGCCTTCTCTGAGCAAACAGGTTTAAGGAGATTATCAGCAATGGTGTGTCCAGAATATTTGTATGATTATGACTATGACAATGAGACAAACGAAGCACTAGTGGATATCTTGGACTGTCTTCCAAAAGAAATTAACATAACAAGTAAGAGGGTACCACTAAAGTACATGTACACCGGGATGTACTCCTTGGTGTTACTGCTGGGGGTGTGTCTGAATGGCCTGGTGATCGTTTTGACTTGCAGGATGAAGAAGACGACTGGCACTATCTGGTTTCTTGGCTTGGCTGTCACAGACCTCACCTTCTGCGTGTTCCTGCCCTTCATGATCATCTATGCAATGAACGACTTCAACTGGACTTTTGGTCTCATCATGTGCAAGCTCAATTCCTATGTAATGTTCATCAACATGTTCTCCACCGCCCTCATCCTAACCTTCCTCAGCGTTCACCGCTGCTTTTCTGCCCTGAATGCCGACTGCTTTAAGAAGTGCTGCACCGCTCTGACAGCCACCAACATGGTGTGGGCCTCGTGGTTCATATCGGCGATTTTGAGCACCCCGTCGCTGGTGCTACGAGATATTGCCCAAACCCCTGAGAGAGTGATCTGTTTCGACAATTATACATACGGATTCCTGAACCTCAATACCACTGAAGGTAAAGTAAGAATCAAAGTTGTTATTTTAACCcgatttatttttggtttatttcttCCCTTTTTCATTATTGGCCTGGGCTCCAGCTTGGTGTCGCTGAAAAGCAACTACAAGTTCACATCCTCTAAGCCGTACCGGATTGTCCGTATCATGATTTTTGCATACTTCCTGTGCTGGGGGCCCTATCATGTGTTCATGCTAGTGGCCCTCCATTCTCGATTCCTCGGTGCAGACGTGGTCGCTTATGGCTTACCTGTTGGCAAGGACATGAAAATGTCATGGATGGAGGATATATTTGTCACAAAGGAACCAAACAAGTTGGAAGAAGCGAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148164 lncRNA upstream 146039 19223374 ~ 19227433 (+) True AMCG00018732
TU148059 lncRNA upstream 464516 18906406 ~ 18908956 (+) False AMCG00018717
TU148025 lncRNA upstream 541229 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 642660 18466368 ~ 18730812 (+) True G118013
TU148240 lncRNA downstream 94872 19576964 ~ 19579031 (+) True G118304
TU148377 lncRNA downstream 512034 19994126 ~ 19994329 (+) True G118410
TU148570 lncRNA downstream 797196 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 820578 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 890127 20372219 ~ 20374812 (+) True AMCG00018781
AMCG00018736 mRNA upstream 27714 19332490 ~ 19345758 (+) True AMCG00018736
AMCG00018739 mRNA upstream 45593 19326479 ~ 19327879 (+) True AMCG00018739
AMCG00018735 mRNA upstream 66732 19299948 ~ 19306740 (+) True AMCG00018735
AMCG00018734 mRNA upstream 77471 19289189 ~ 19296001 (+) True AMCG00018734
AMCG00018737 mRNA upstream 90506 19274909 ~ 19282966 (+) True AMCG00018737
AMCG00018743 mRNA downstream 123930 19606022 ~ 19612141 (+) True AMCG00018743
AMCG00018746 mRNA downstream 130533 19612625 ~ 19636734 (+) True AMCG00018746
AMCG00018745 mRNA downstream 194530 19676622 ~ 19677939 (+) True AMCG00018745
AMCG00018744 mRNA downstream 196679 19678771 ~ 19684562 (+) True AMCG00018744
AMCG00018754 mRNA downstream 205492 19687584 ~ 19701791 (+) True AMCG00018754
TU147936 other upstream 652129 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1391169 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1391358 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2303802 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 4416892 14954564 ~ 14956580 (+) False AMCG00018602
TU148369 other downstream 489047 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 777285 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 891904 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1032068 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 1110644 20592736 ~ 20593016 (+) True G118635

Expression Profile