RNA id: TU148213


Basic Information

Item Value
RNA id TU148213
length 1416
RNA type TUCP
GC content 0.42
exon number 2
gene id AMCG00018740
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19373472 ~ 19482092 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACACATGCATCTTGACGGATGTTAAAATAGGTTTGAACAGATTGCGTCAGATGTGAACCGCTAATTAAATTTACGTTATATTTCTACTTTGATTTGACGGTGACAATATTTAACATTAGGCTTAACGTGTATGCATATCCATGGCTTTCAACTGTTTGAGCAATCCCTGTTAAAGTTAAGTGTTAAACTTTCAGTTTCATTCTGACTGGAACAAAATCCCTAGGGAGCTGCGTGGGGAAAACAGCTGCATTTCGAGAATTAGTATTTAAGGggtttaaaagtttaaagagGGACTGATCGCATAAGTGTTTCTTTCTTATTcgtgagtatttttttttctctctctctcatggtgccatacacatacattattgtCTCGGGTTACATTTCTAGCAGAGAAAACTGCCAGGAGTGCATTGGAATATTACTGTGTGAAGCTGTGtggcatattttattattgtattttttcagACAGGTTTAAGGAGATTATCAGCAATGGTGTGTCCAGAATATTTGTATGATTATGACTATGACAATGAGACAAACGAAGCACTAGTGGATATCTTGGACTGTCTTCCAAAAGAAATTAACATAACAAGTAAGAGGGTACCACTAAAGTACATGTACACCGGGATGTACTCCTTGGTGTTACTGCTGGGGGTGTGTCTGAATGGCCTGGTGATCGTTTTGACTTGCAGGATGAAGAAGACGACTGGCACTATCTGGTTTCTTGGCTTGGCTGTCACAGACCTCACCTTCTGCGTGTTCCTGCCCTTCATGATCATCTATGCAATGAACGACTTCAACTGGACTTTTGGTCTCATCATGTGCAAGCTCAATTCCTATGTAATGTTCATCAACATGTTCTCCACCGCCCTCATCCTAACCTTCCTCAGCGTTCACCGCTGCTTTTCTGCCCTGAATGCCGACTGCTTTAAGAAGTGCTGCACCGCTCTGACAGCCACCAACATGGTGTGGGCCTCGTGGTTCATATCGGCGATTTTGAGCACCCCGTCGCTGGTGCTACGAGATATTGCCCAAACCCCTGAGAGAGTGATCTGTTTCGACAATTATACATACGGATTCCTGAACCTCAATACCACTGAAGGTAAAGTAAGAATCAAAGTTGTTATTTTAACCcgatttatttttggtttatttcttCCCTTTTTCATTATTGGCCTGGGCTCCAGCTTGGTGTCGCTGAAAAGCAACTACAAGTTCACATCCTCTAAGCCGTACCGGATTGTCCGTATCATGATTTTTGCATACTTCCTGTGCTGGGGGCCCTATCATGTGTTCATGCTAGTGGCCCTCCATTCTCGATTCCTCGGTGCAGACGTGGTCGCTTATGGCTTACCTGTTGTGACTATACTAGCAACCTGTAACAGCTGTATCAATCCTATGATCTACAN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148164 lncRNA upstream 221193 19223374 ~ 19227433 (+) True AMCG00018732
TU148059 lncRNA upstream 539670 18906406 ~ 18908956 (+) False AMCG00018717
TU148025 lncRNA upstream 616383 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 717814 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA upstream 772400 18674274 ~ 18676226 (+) True G118043
TU148221 lncRNA downstream 5514 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 17195 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 29063 19479691 ~ 19479956 (+) True G118291
TU148240 lncRNA downstream 126336 19576964 ~ 19579031 (+) True G118304
TU148377 lncRNA downstream 543498 19994126 ~ 19994329 (+) True G118410
AMCG00018736 mRNA upstream 102868 19332490 ~ 19345758 (+) True AMCG00018736
AMCG00018739 mRNA upstream 120747 19326479 ~ 19327879 (+) True AMCG00018739
AMCG00018735 mRNA upstream 141886 19299948 ~ 19306740 (+) True AMCG00018735
AMCG00018734 mRNA upstream 152625 19289189 ~ 19296001 (+) True AMCG00018734
AMCG00018737 mRNA upstream 165660 19274909 ~ 19282966 (+) True AMCG00018737
AMCG00018743 mRNA downstream 155394 19606022 ~ 19612141 (+) True AMCG00018743
AMCG00018746 mRNA downstream 161997 19612625 ~ 19636734 (+) True AMCG00018746
AMCG00018745 mRNA downstream 225994 19676622 ~ 19677939 (+) True AMCG00018745
AMCG00018744 mRNA downstream 228143 19678771 ~ 19684562 (+) True AMCG00018744
AMCG00018754 mRNA downstream 236956 19687584 ~ 19701791 (+) True AMCG00018754
TU147936 other upstream 727283 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1466323 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1466512 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2378956 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 4492046 14954564 ~ 14956580 (+) False AMCG00018602
TU148369 other downstream 520511 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 808749 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 923368 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1063532 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 1142108 20592736 ~ 20593016 (+) True G118635

Expression Profile