RNA id: TU148230


Basic Information

Item Value
RNA id TU148230
length 1903
lncRNA type sense_over
GC content 0.34
exon number 1
gene id AMCG00018742
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19467768 ~ 19498979 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTAATGTTCACAGTGCTGACCATGACCAGAGGTCAACATATTCCcacttaacatttaaatgtttaatgctgacaaattaaacaaagcaacaaccaattacatttcatatctattaattatttcagttcTGTTCTGAGTACGAGTACAGTGAACATTAACTCGGTAGGCACAATATGGTTACAAATCACTTGTGGTGGCTTGCTTTTCATAGTAGAGTGCTGGTGGCAACTTTGATGCATTTTCTCTCGCAGCACAACTGACTCATATAGATGAACTCTATTGATAAGCACTATTGTTCCAGTCATTAAAGTAATAAagtatagtttttttcttcttttctttgcaACAAGAGATTTTGACATTATTCTGCAAAGCAAGCTGGGACCTGAACACATACAATCAATGTCTCATGTTCTTTGTTGTTTGAACAATTTGCTCTCCGGGACTTATTATTTGTTCAAGCCTCTTTTAATAGTGCTTTTCAAAAACTGCCAATGCGTTTAAACCTGACATTGTTGTCAGACTAAACACTACACTACAAAGAAGAATTGTTCTCAATACtgtataaaaaagaaacaactaaATTAGGgcttttttggggggctttTCATCACAGACTTTTCTGTAAGAGTAAGGAGTCAATGATTACTTCCTCTCTGTCAGTCTGTTTCTTTCCTTCTGCTTTAACTATAACTATGACATCCAAGGAAAATGggtgatacatttttatgaattacgattttacaatacaatttctGAAGCTTGACAAAAACGTGTTAACGTCGAAAATGATTTTGAATCCTAACCTGGATGTCAGACATAGACCGCTGTTATCCGGACATTAAACGTATAAGATCCAGTTGAGTAAAAAccataaataatgcaaaaagaaaTCTGCTTCATTCTTCAGGACACATCACTGATCAAAGAATTCCTGCAAAAGCATTTGCATTCATGTGTTCTAAAACTCTCCTGACACAACATTTTCCAACTAAAATTGTTTATGTATGGTTTTGTAATATGTGGAGTGTAATTCAACAGAAGAGCAGGTTAGAccctgtaaaaacaaacaaaaaaaagcaaaaaaacaggGAAGTGACTTATATCTGGCATTTGTGTTTCAGAAACAAAAGTGAATACTGTTTTTCTTATATTCCTATATGTTGCACATCTATACTGGCTTTGAAGCCCCATAGTCAAAACTATGCCGAATGTCTTATTGCAGAGAACAGATCCCTCTGAAATTCTTTTCAGCTGCATAAATAACGGTGCATAATACTTTCTCCTAAGAACGAAAGTGTAGCAAATGCTATTAATTGTGGTCTGCCTGCTGTGCCTGTGTTTATGTTGCAGGAGGGTGTGCGTTGCTAGCTGCTGCAGAATACAAATGCAGATTCTTTACACATGCATTACAGAATCATTAGTACACAACTTAACCcctacacaaaataaaatacaaatagaaaggaggactgattaaaacaaaaatagaaaaaatgttatttccttatatatttttatagttcGTACAAAGAAAATGAGctcaaaataatttataatgcaaAGACATAAGGGAATTTTTAGAGTTGCAACTATTTTTTGACACGGGCTACTTTTGAATGTTTCATGCTATTGATTTAGACTTGGTACTGTATGGGGGTCACTtctttgaatgtattttgtatggaatgaatgtaacatgtttttaccaaaaatagttcaaatagagaaagaaaggcaacaacaataaaaacagtatgcTAAAGGGATATGTTGTGCAATGTTTCAGATTATGTTTCTGGTATGCTCGACCAAATGCACATGTACATTTCCTgagaaaggaaattaatattcTGTCCCCTTTTTGATATAATGTTAAGGTATTGCACTTGCCTGAATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148225 lncRNA downstream 7299 19459926 ~ 19460509 (-) True G118289
TU148198 lncRNA downstream 132031 19333308 ~ 19335777 (-) True G118266
TU148166 lncRNA downstream 240374 19224672 ~ 19227434 (-) True G118239
TU148165 lncRNA downstream 246176 19221297 ~ 19221632 (-) True G118238
TU148149 lncRNA downstream 289068 19178481 ~ 19178740 (-) True G118223
TU148235 lncRNA upstream 29815 19499525 ~ 19532143 (-) True G118299
TU148241 lncRNA upstream 107304 19577014 ~ 19579032 (-) True G118305
TU148418 lncRNA upstream 524433 19994143 ~ 19994359 (-) True G118440
TU148448 lncRNA upstream 563500 20033210 ~ 20035657 (-) True G118466
TU148452 lncRNA upstream 586769 20056479 ~ 20057545 (-) True G118469
AMCG00018741 mRNA downstream 117908 19346052 ~ 19349900 (-) True AMCG00018741
AMCG00018738 mRNA downstream 134566 19327981 ~ 19333242 (-) True AMCG00018738
AMCG00018733 mRNA downstream 272600 19181739 ~ 19195208 (-) True AMCG00018733
AMCG00018726 mRNA downstream 305186 19155021 ~ 19162622 (-) True AMCG00018726
AMCG00018729 mRNA downstream 314744 19149225 ~ 19153064 (-) True AMCG00018729
AMCG00018749 mRNA upstream 110692 19580402 ~ 19603286 (-) True AMCG00018749
AMCG00018748 mRNA upstream 168450 19638160 ~ 19649266 (-) True AMCG00018748
AMCG00018747 mRNA upstream 185730 19655440 ~ 19674082 (-) True AMCG00018747
AMCG00018750 mRNA upstream 215655 19685365 ~ 19686363 (-) True AMCG00018750
AMCG00018755 mRNA upstream 309059 19778769 ~ 19792342 (-) True AMCG00018755
TU148096 other downstream 420231 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 993563 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 1863960 17603356 ~ 17603848 (-) True G117899
TU147639 other downstream 2211537 17226090 ~ 17256271 (-) True G117823
TU148412 other upstream 517964 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 608378 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 974787 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 1020501 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 1133808 20603518 ~ 20605820 (-) False AMCG00018794

Expression Profile