RNA id: AMCG00018748


Basic Information

Item Value
RNA id AMCG00018748
length 3024
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00018748
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19638160 ~ 19649266 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAAGAGCCTGGACAATAAAGGACAGCGGGACAAAACTCTATTCCATGACGTGGCTAGCTTGGCAGAGTATGAGGGTGGAAGAGCTGGAGAGGACCTTCTCGCCTGGCGGGGAGGGGGCGGCGCCTCTAGGACCCGGAGGACGCGGCGCAAAGGGGAGTTTCCTCCTCCCGCAAAACTGAGGCTGTTTACCAAGATCCCACCAAAACAAGGGCTGGACGGCAGCGAGAGAAGCAGCAGTGTGCGCACAGGCTCGGCACAGGCTCGGCACAGGCTCTTCTGCACAGACACCGTTCTCTttgattcttgtttttttaagccgCACATCGGACACAATGCTGTTTTCCGCGCCTGTGATGGTGCTGCTGGTCTCCTGTGCGGGGGCTGCATCACGCAGTCTAATGGCGCTGAGTACAGAGGAGACGAGCAGATCACGGCCACAGGAATGAAGTGTCTCAACTGGATGAACACAACGAGAGACTACAACACCACGGTGCTCCCAGATAGCGAGACTGGCGTGGGGGACCACAGCTACTGCCGAAATCCGGACAGTTCACCCAAGCCCTGGTGCTACGTGACTGGCAAAGACGACGGGTTCCAGAGGCAAGACTGTGTAATTGATGTCTGTGAAGACCGGGCGCCCGTGGCATCGGCGACAGAGGGTTCCCTGGCATCCACCTCGGGCGAGACGCAGATCTTCGAGCCGGCCGAGGCCCTGCCAGCGCAGAGTGAGAGCGCCGCCGTGCAGCCGGTCATCGGGATCAGCCAGCGTGTCCGCACCCGGCCCAAGCTGAAGAAAGACCTGGGCACCCCGGGCTATGTGATGGCGATCCTTCTGATGACTGTCATCATTGTCCTGGGAGTGGGAATCACTCTGGGATACTTCTACAAGAGGGGCCGGGACCTGAAGAAACAGCATGACCAGCGGGTGTacgagagagagatgcagaggaTCACCCTCCCGCTGTCCGCCTTCACCAACCCCACCTGCGAGATTATGGACGAGAACACCATCGTCATCAGCACGAACCAGACCCCGGTGGAGGACATCACTGAGGGCAGCGACCCTCTCATGGGCCAGGCTGGTACGCCAGGGGCTTGAGTTGCCAGCATAACCCGGACGTGAGAGTTCGGAATTTACTCTTAATCTTTAAAAAGGCCCTGGATTGTGTGGGTTAAGACTGAAAGCCATACTTAGAAGAAAAAATTccaatgtaaaatgtttgaattttattttaaaagttgatGTGTGTTCAACtttgtgtggtggggggggaaacCGACAGCCTCTTCTATTGAACCATCAGGGATGGAGCCCACAGCGTAGGGTTGTATAAAAAAGCATGCCAGACATTTAGTGCAAGTCATTAATTTTGTAAAAGAGAAGGTGATGttctatgatttttttaattcactggcTGAAGAGTTATGATTCTTATATTTGCAAATGATATTGTAATCAATGGCAAAGATGGTCAGATCAAGGTTTTTGTAGACTGTAAAGGAaagttgctttttaaaaaaaaatctgtcctAATGGTTCTACTCTTTGTTGTGTTAATGAAGAAAGGACAGGTGCAATTCTTCATGTTCACAAACCAGGGGAAATGTAGAAATTCTCCCGTAATCTAGAACGCGGCAGTTGTCACGACTGGAGGGGGAGTTGCTCCCGTCCTGTGAGAAACCGAGAGGAGGGTTGGGCTGGTATAGGACGCCCATGAGGTGCTGTTTGTGACTTTGTTGAATAAGCTATTAAGGCTGTCCCAATGAAAACATTCTTAGATTTTGTACTTTGGAAACTTAATtccaaaacataaaagaaaaaaacaaaaactgccaaCTGGTGCACAGAAGCAAAAACAGGAACTGGATTTCTGCTGTGGAAGTTGGGGAAAATGGGATGtttcaaaaatgaaactaaacagCCTTTCAAAAATCAGTCCCGAGGAGAAATGCTTTAAATGGCAAAATCCTTTAAGGGATTGACCACAAACATTGCAGTATTTCAAagtagaaattaaataaaatttgatGCTACATTTCCCCAGTTCTTGGATTTTAAGTATtcttaatcaaatgtattttttcttattttatagtGTGAGAATTTATCAAGCACAGAGGTCTCCTCTGCTATCTCCATTAATAAGAAGCATTTGTTCGTTCACAGAAGAATGGATTGGAGTGCAACTTGTTTCATTTATATAACAAtacaatgaggaaaaaaatagtCCATCGGTCACTCATGCACAGTGGGCTCGAGAACAACTGAACACAACATGGAACAAGCCAGACTGTGCCTTTTATAATAAGTAGAAAGCATAATGTAGTTAGAGCTCATTTCCACTGGAGCTGGAAATGTAATTAGAATGATAAGATTACATGTGAGAACCTCAGGAAAAACAAGGATTATGGAAAGGGGGCTGGGGGTAAAATCTGTATAACAGCAAGTGACCTACCTCCTGCAAAACGAGATCTGTTCAGTCAGTACAAAGCGAGAACTCGATCAGGTTTTAAAACCGACgttaagcatttttaattttcaaccCATGCTCTCTGGAATACTCCTGTCCTTATTTCAATATTCCCATTGTTAACAGACCAaaagatttcaaatattttcaggAAGCACCATTTTCATCAGTTTTATTCATTAtccaaagattttttttttttttatgtgtacaTGTATTACAACGTGCAACCCAATGCATTGATTGATTGTCTCCTCCATGAACAGGACTGCTTTTTTCTGTGAACTTAACAAAATACTGCTTCTTAAACCAACTGTGACACATTCATGATTTTTGTGTTGGGAAAAACCAAGAAACCGAACACTGAAGGGCTGGCAAACCGTTTATCGGAGCGGTTTGTCATCTTTGGAACagtctgtaaatattttgatttcttatGATGCACATACATATGAGTActgttgcttatttttttaatgtttaaaatttaCCTCAGTACTTTGCATTTGTATATTTGGCAGTTTGTACTGCTgggacacaaaataaaagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148241 lncRNA downstream 59128 19577014 ~ 19579032 (-) True G118305
TU148235 lncRNA downstream 106017 19499525 ~ 19532143 (-) True G118299
TU148230 lncRNA downstream 168450 19467808 ~ 19469710 (-) False AMCG00018742
TU148225 lncRNA downstream 177651 19459926 ~ 19460509 (-) True G118289
TU148198 lncRNA downstream 302383 19333308 ~ 19335777 (-) True G118266
TU148418 lncRNA upstream 344877 19994143 ~ 19994359 (-) True G118440
TU148448 lncRNA upstream 383944 20033210 ~ 20035657 (-) True G118466
TU148452 lncRNA upstream 407213 20056479 ~ 20057545 (-) True G118469
TU148455 lncRNA upstream 409706 20058972 ~ 20059409 (-) True G118470
TU148459 lncRNA upstream 424085 20073351 ~ 20074161 (-) True G118474
AMCG00018749 mRNA downstream 34874 19580402 ~ 19603286 (-) True AMCG00018749
AMCG00018742 mRNA downstream 139181 19467768 ~ 19498979 (-) True AMCG00018742
AMCG00018741 mRNA downstream 288260 19346052 ~ 19349900 (-) True AMCG00018741
AMCG00018738 mRNA downstream 304918 19327981 ~ 19333242 (-) True AMCG00018738
AMCG00018733 mRNA downstream 442952 19181739 ~ 19195208 (-) True AMCG00018733
AMCG00018747 mRNA upstream 6174 19655440 ~ 19674082 (-) True AMCG00018747
AMCG00018750 mRNA upstream 36099 19685365 ~ 19686363 (-) True AMCG00018750
AMCG00018755 mRNA upstream 129503 19778769 ~ 19792342 (-) True AMCG00018755
AMCG00018756 mRNA upstream 215726 19864992 ~ 19871894 (-) True AMCG00018756
AMCG00018761 mRNA upstream 245584 19894850 ~ 19913272 (-) True AMCG00018761
TU148096 other downstream 590583 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1163915 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2034312 17603356 ~ 17603848 (-) True G117899
TU147639 other downstream 2381889 17226090 ~ 17256271 (-) True G117823
TU148412 other upstream 338408 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 428822 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 795231 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 840945 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 954252 20603518 ~ 20605820 (-) False AMCG00018794

Expression Profile