RNA id: AMCG00018749


Basic Information

Item Value
RNA id AMCG00018749
length 5394
RNA type mRNA
GC content 0.43
exon number 13
gene id AMCG00018749
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19580402 ~ 19603286 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTGTTCTCCTCTccagacacagaaagaaaggcagacgCACACAGGCTGGTTAACCATAATCTGCTGCGGTAGTAGATGAACAAGTTTTCTAGAGCATTTAGAGCAGTGCAAGCAGGTTCTGCAAATCCAGATGTTTCTTCCCAGCGTCTTGTTATAATAGGGGAAGCGCCTATGAACGAACTGAATGCGCAATTCTGCTTCACTGGCACTAGACACTAGTAGAAGGAACAATAGCGCCAGTCTTGCGTGTCTTGTAGTAGGTGATACCGGTCTGCCTGCCCTGAATGACACAGCAAAGTTCAGCACCCCAGCCAGTGCGCCAGCTGTGCGGGGATGTGACGTCGGGTAGCGGCTGCACTGACAGCACGCTGCCTGCAGACTAAAGGCAGTGGGATGTATTACAGCCAGGAAGCAATGGCTCTATGATGGGAGGCTGTGAAGACTTCCACCTTGTGCAACTCACCGATATATAAGCAGGGACATGTCATGCAGGCTATATAATTAGCAGGTCCAACTTCCACCTTGTGTAGTGCCTCATGTAGTGCCTCATGTGATTTTTGAAACCCAGTTGCGGAGACCGTTTTGTAGCGCACATTGAAGCCGGGTAATCATTCGATTAATTTGTATAGCTTGACGTTTCCTTGCAGGTGACAATGTCGCGCTTTTATAGCGATCGCGAATGAGCTGCATCGGATATTCGTTGTGTAATCTTTTCGAAACATCAGTctgtctatatgtatatgtatgttttgttgtttgtgagATCGGTAAGGTTTGTATTGTAGTGTGGTTATTTCATCGTATTTCAAAGTAGTCTGCATCGTATTTGGAAAAGCATGGGAGTAGGGACCGAAAATATGGACTCACGCCGCAAAGCGTTCATTGAAAGCGGAGGGAAAGCGGGCGAGGAGGAGGATGCTTCCATCTCCACGTCGGATTTCATGTTGAAGGTGAAGGAGCCTGCGGGCCAAAGCGGGTCCCCGCATCCCGACAGAGGCACCTGGGGGCGGCGGGTCGAGTTCATCCTGGCCAGTGTGGGGTACGCGGTCGGACTGGGCAACATCTGGCGATTCCCGTATCTGTGCTACAGGAGTGGAGCGGGGGCATTTCTCATTCCATACTTTAtcatgctgtttttgtgtgggGTTCCTCTGCTCTTCATGGAGTTTGCGGTTGGACAGTACACCCGCTTGGGACCAGTACTTGCCTTGGCTAAAATGTGTCCTCTGTTGAAAGGTTAGTGACCTCTGACGGGTATGTATGGGTCAAAGGTGACAGACAGCGACTCATGTAGGCCCTGCTTCTGTTTTCTCTCGTCACAGTCACGtgatgtgttatttaaaaaataaatgcgtTCTTGTTCTCAAAATACAGTCCAGCAAACAGGCAATGGTGTTGTATTTGAGTGCTCTGTAATTTCATCAGGTTCACAGTACAGTCCAATATCTGGGGTGCATGCATAAAAAGTTTGCGAAATAtatcttgttttaaatgttgtagtCATGTATTCAGACTGTCTTATGTCAACTTAAATGTCCCGTTTTGGGAGgtgtcacaaaatacacatgtgaagtaaagcatttaaaaaagcaataagaaataaaaacagaacatgaaTGTATGTGAATATATTGTGTTGTACACGGTCTTCTCAAAATCAAGGTGACTTGGATAAAGGCAGGATTCTTTTTAGCTTTTTTATCATGCTGTGAAAGCCCTATCAAGGTCATTGTAAAGTTTGAGCAACTCAGTGTTTTGAAATTATCTTGCCTTTCCTAATTAATTTCTTCCAAAAGTCACGGCTGAATTCCAATAGTCTGAACGCCTTCATCAGCCCTCCCCAATGAATGGGATCTAAAGATTAACCAAGTCTTAAATAAACTCCCCCTTACTGGCTTATTCGCCGTCTCTGCTTGTATAAGTGGTAAATTGTAGTCACTGTGTGTTCAAAGGCAAAGCTTAACATCCGCAAAGTGGACTTGGCAAATAACAAATACTGTCTTGTATCATCTcccattaataaaaacaaaggaagaTAGGTAAGCAGACTAGCCTTGAAGGAAGttagaaattaataaattgatcagtagacaaaataaaaatttgaaatGACTGGAATtctcaaaaatattttgttttattcaatctAATCAAAACATCAGTTGTTTATGGAATCAATAGCTACAATAACATAAAACTGACATTATCATATACAGCATGTTATAGAGCTGTCAGATGATCTAAATAATACTATTTTTGCATTACAGGGCAGGGGCAATTTTGGAAAAGCTTTTGGCTTTAGTTTgataatttgtattgattattgCAGCGCAATCTAAATATTGTTGGAGTATCTTGATAGAAGACTGCAGATGGGCATTTCCCAGCGAGTGTTctggcatgtttttttcttgaatatgtatatattatgagGATTGTGTGTTTCCTACAGAGCACTAAGACCCCCGTTGCCAGTTTGCTGGTATGTGGTTGCAGGGGTCGGTTCCCAGCATGCCCCTGGCTACAGGTTTTACTGAAGTCCTCACTTTGAAACCCCTATAGTTCTTATAATTTCAGATgaaattgaatgtgatttttttttttattgttggttttgcattttattctttTGAAATTTCTTTCTGGCACTAAACCCAATAATTTCTGATAATCTGTTGATGGCTGCCCTGTGAAAAGATGTTTCCAATTGCATTGtaatttcccccaaaataatttACACTGTCTTCTAGAATAGGGCTTCAATAATTATTCTAGCACTTCAATTGTGCCAAGGGTTCCCTGCAGATGATAGAAGTTTGCGTCACTCTATTTTAAGAAACATAACCCTGCAGAAATTAGGAAAATAGGACCCAAAAGAATATTGTAGGatcattgctttaaaatagcTTTGGTGAACTGACTTTCAATGTCAGAAAAGAGACccctttaattaaatacttgttTCCCAAAAACcccatcaaaacaaaaacattataccCTATTGTGCATctcaattcaaaaataatatataccaaATGAAAAGTTTCTGATTTTTCACGTTATTAATTCTAGACatccacaatatatttaaacgtATATTTCATGCTATTTCTTTACTCAGTCACGCAGAAGAAAATGAATTCACAAAATCCCAGTAaattccttccttcctttctttgtaAATTCATCGCACAAAAATCACAGAAATATATTCTATAAAGATGAATGCATTTAACGAGTTTACCTTTTTGTTCACCAGTTTGCAAAGTCTTAGATTTATTCTGCCGTTCAtttgtgttctgtattttttgtttttggtgacGAATTGTAGCACCAAcctaagtgtttttatttcagtccaGTTAACGTAGGCAGAACATACTTGATCTAGTGGCAACCATCTTTTGAACATGTATCACACGGTACTTTTTCTGCTACGTGAATTTGGGAATAGAAAAACAAGTGTTTGATAAAATTGTGGGTGTACAGAATATAACAAAGCCAGAAAAGAATAGTCCTAAACAAGTCATCTTATCAAGGTGAATGAATTGAGATGTTGTCACTTTTGAGTAAGTCCAGCGTGCATCAAAGCAGGAGCCCAGCCATCAACAGCCGACTTTCTTGGGCTGCGGTATTTGGTTCTGAAACCTGTTCTAACCTAAAGACTTTTCTCCTTAGTTTTTTTATCTCCTCTGAGACAGAGATAGTCTACCCGGTCAAACCGTTTGGCTCCGTCACTTGCTTTATCACTCGTGCCTGATTATGGCTCAGTGCTTAACGAGGGCCTGACTCAGGTGTAGGCCTGTCCACGGTTGTCATCTCCTTCGTGCTCTGTACCTATTACAACGTTCTCATGGCCTGGGCCCTGTATTACCTCTTCCACTCCTTTCGGTCCACACTTCCTTGGCAGAGCTGCAACAGCACGTGGAACATTCCCCAAAATTGCTCCAGTGGTTTTCCTGGCAACGCCACGCATCTCCAGTCCGCCAGTCAGCAGTTCTTTGACCATAAGTTACTGGAGAAAACTGGGGGGATTGACCAGCCGGGGAGCATGCGTTGGGAGCTGTTTGGCGTACTCCTCCTGGCCTGGGTCATTGTTTACCTGTGTATCTTCAAAGGCGTCAAATCCACTGGGAAGGTGGTGTACTTCACTGCCACTTTCCCATACCTCATCCTGACTGCTTTACTCATCAACAACGTTCAGTTGCCTGGAGCCAAGAACGGCATCCTGTACTTCGTGACACCCGTCTGGAGCAAGCTGCTGGACGTGCAGGTGTGGGTGAATGCTGCTGCTCAGATTTTCAATTCCATTGGGATTGGCTTCGGCTCCATGATGTCCTTGGCGAGCTACAATAAGTTCAATAACAACATTCTCCGAGATACGTTAATTGTCTCCTTGGCCAATTCTGCCACCAGTATATTAGCGGGGTTTGTGATTTTCTCCGCTATTGGATACATGGCCCACTTACACAATCTGCCGGTGGATGATATAGCTACTGATGGTCCTGGCCTGGTGTTTGTTGTGTACCCAGAGGTTTTCTCCACCATGCCCGTGTCCCAGCTGTGGGCCTTCCTGTTCTTCCTCATGCTGCTCTGCTTGGGCCTGGACAGCCAGTTCGCGATGGTGGAAGTCATGGTGACGTGCGTGATGGATGGGTTCGGCCCCAGGCTGCTCCGGGTCCTGAAACGGAAGGAGTTTGTGGTGTTGGTTGTGTGCTTTGTCGGCTTCCTTTTCGGACTCCCCGACATAACTCAGGGAGGGATTTTTGTCTTCCAGCTCATGGACCACTACACTGCCGTTGTGTCTCTCATGTTCTTGGCTTTTTTTGAAGTGGTCGCAGTCTGTTGGATTTTTGGAGTGGGGAGGATTTCCAAAATGGTGACTAAAATGTTGGGAAAGCCTCCCAACATTTTCTTCAGAGTCTGCTGGATGGTATTCTCTCCCACGCTGGTCATGTGCATTTTGATCTCCAGCATAGTCCATTACAAACCGGCTCGCTACGGGAAGACCTACACCTACCCAGCATGGGCTGAAGGGGTGGGCTGGTTCATTTCTCTCATCTCCATTATATGGATTCCTCTTGGAGCCGTGCACACCCTCTCTTACAGTAAAGGGACATTGATGCAGCGACTGAAGGCTTCATTGTTACCCTGTGATGAATTGGCCAACATTGACGTCCTGCCTGAAGAAAACCAACCCCATTCATCCCAGTCACAGTCCTTGGATATGATTCCTGAAAAAGCTCCTCTAAATGACAGTGAAAGCAGCCTCTAACCACGAGCAAACATCTATCTTTGGCCGACCCATGAAGATgatatactgtacattatatTGAAGTACACACttattaagtatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K05039 SLC6A6, TAUT; solute carrier family 6 (neurotransmitter transporter, taurine) member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148241 lncRNA downstream 1370 19577014 ~ 19579032 (-) True G118305
TU148235 lncRNA downstream 48259 19499525 ~ 19532143 (-) True G118299
TU148230 lncRNA downstream 110692 19467808 ~ 19469710 (-) False AMCG00018742
TU148225 lncRNA downstream 119893 19459926 ~ 19460509 (-) True G118289
TU148198 lncRNA downstream 244625 19333308 ~ 19335777 (-) True G118266
TU148418 lncRNA upstream 390857 19994143 ~ 19994359 (-) True G118440
TU148448 lncRNA upstream 429924 20033210 ~ 20035657 (-) True G118466
TU148452 lncRNA upstream 453193 20056479 ~ 20057545 (-) True G118469
TU148455 lncRNA upstream 455686 20058972 ~ 20059409 (-) True G118470
TU148459 lncRNA upstream 470065 20073351 ~ 20074161 (-) True G118474
AMCG00018742 mRNA downstream 81423 19467768 ~ 19498979 (-) True AMCG00018742
AMCG00018741 mRNA downstream 230502 19346052 ~ 19349900 (-) True AMCG00018741
AMCG00018738 mRNA downstream 247160 19327981 ~ 19333242 (-) True AMCG00018738
AMCG00018733 mRNA downstream 385194 19181739 ~ 19195208 (-) True AMCG00018733
AMCG00018726 mRNA downstream 417780 19155021 ~ 19162622 (-) True AMCG00018726
AMCG00018748 mRNA upstream 34874 19638160 ~ 19649266 (-) True AMCG00018748
AMCG00018747 mRNA upstream 52154 19655440 ~ 19674082 (-) True AMCG00018747
AMCG00018750 mRNA upstream 82079 19685365 ~ 19686363 (-) True AMCG00018750
AMCG00018755 mRNA upstream 175483 19778769 ~ 19792342 (-) True AMCG00018755
AMCG00018756 mRNA upstream 261706 19864992 ~ 19871894 (-) True AMCG00018756
TU148096 other downstream 532825 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1106157 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 1976554 17603356 ~ 17603848 (-) True G117899
TU147639 other downstream 2324131 17226090 ~ 17256271 (-) True G117823
TU148412 other upstream 384388 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 474802 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 841211 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 886925 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 1000232 20603518 ~ 20605820 (-) False AMCG00018794

Expression Profile