RNA id: AMCG00018752


Basic Information

Item Value
RNA id AMCG00018752
length 4224
RNA type mRNA
GC content 0.41
exon number 12
gene id AMCG00018752
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19751614 ~ 19771954 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaaatctCACAGCTGGCAATGAGGGTCGCAAGAGAGTCGATTCAAGCGCACATTGGCTGCCTGGCTGTCGGTGATGGCTAAATCCAAGTCCAGATTGCGCTGCTGCGTGTGCGTCTTCGCCTTGTGCTTCATTGCGATCATTATTCTCTTATTCATTTTCCTCCTAAGAAGTCCGACATGCGCAGAAGGGCAGTACAGCCGCGGCGCTGTGGCTGCGGACTCTCAGATCTGTTCTTTATTCGGAAGAGACATACTGAAGGAAGGGGGCTCGGCAGTAGATGGTGCCATTGCAGCACTTCTGTGCACCTCCTTGATCAATCCACAAAGCATGGGAATTGGTGGGGGAGCAATATTCACAGTTTTTGAAAAGACAGGCAAAGTTAAAGTCATAAATGCCCGGGAAACAGTTCCAAACATTTTCCAAGCTGATCTGATGAAGGACTGCCCCATGGGATCCCCATTAATTACTGGCAGTAAATGGATTGCTGTGCCTGGGGAGATTCGTGGTTATGAAAAGGCACACAAGATGTACGGCAAGCTGCCCTGGAAGAGACTGTTTGAACCGACGATCAAACTGGCCAGAGATGGGTTTAAAGTGCCTCAAATACTCAGTCGGTACCTCCAGTTTCCCATGATAAAAGGGAAAGTGGAAGGCTCGTCTCTGTGTGCCTTGTTTTGCGATGAAAATAACAAGACTCTAAAGGAAGGGGACACGCTGCGTTATGAGAAGTTGGCAGACACGCTTGAAGCAATTGCCAATAGCGGACCTGATGCATTTTATAAGGGCAAGCTGGCTGATGATTTGATCACGGACGTGCAGAATGAAGGTGGAACTCTGTCAACTGCAGATTTGGAGTCCATGCAGGCCGAAGTCTCTGATGCATGGACAGTCCAACTGGGGACCTACACTATGTACTTACCTCAGCCACCAGCAGGGGGAACTATTCTGAGTATTATACTCAACATTATGAAAGGGTACAATTTAAATCCCAGTTCCTTGGAGGGAGACAATAAATTCCTGACCTATCACCGCTACATTGAGGCTCTAAAATTTGCAAACGGACAGAAGAGGAAGGTCTGGGATCCTgcagtAGCTGAAAGGTTGATTAAGGATGATTTTGCAGCCTATGTGAGGTCGCTAATCAGCAGCAACCAGACCCACCCTCGCCAGTACTACAATGTCAGTATCTCTCGCGACGGAGTGGGTACCACCCACATCTCAGTCCTGGCTGAAGATGGCACCGCTGTCTCTGTTACCAGTACCATCAATCAATTATTTGGCTCAATGGTGTATTCTCCGAGCACGGGAGTCATTCTCAATAATGAGCTCGCTGATTTCTGTGGCCTGGTGGACAGCATCTCGACAGGGGAGAAGCCCCCCTCATCCATGACTCCAGTAGTGTTATATTCCAAGTCAGAGAAGAAAACCCTGGTGATAGGAGGCTCTGGAGGATTCATGATCACTAGCAGTGTTGCCATGGCTATCATGAACCATCTGTGGTTTGGAAAAGACTTGAAAGAAGCAATAAGTGCTAAGGTGGTAACTGTGAACTCAACTAATGGAGTGAATTTTGAGCACATGTTTGACCAGACTGTGATTGACAAGATGAAAGACATGGGACATGGTGTGGGGACAATGAAATATGCCTTAAATGTGGTCAATGGCATCTTTAAGCAGGACAGCTGTATCACTGCTGTGTCGGATGCCAGAAAGAACGGGGAAGCAGCAGGTTATTAGGGAACATCCCACAAGAGCAGGAGGTTTTGACACTGGAGTGCCGGCTGTGAAGGCTGGAGGGACTGGGCCACATTTTGTATCTTCTCATTGGTTTACTAGAGAATCAATCTGCTGGGACAGGCTTCCCTTAGCTCTCGATAATGTGAACTCCTTAAGGGCCAATTTAGTGATGGATCCCAATACAGCCCTATCTCAACTTTGCCCTCAGTAAACCACAGTCTTTGTGATACGTTGGCCTCAGGTTTGAAGGAGAAGTCATGTTCGATTTAGTGTTGCTGACAATCTAGTTAAATTGTaatagattttttgtattttctttttgtatctGTTCTCCAAAGCATAAGTGTTTGAACAGCACAGTTCTACAGAAATCTCATAATTAATTTTGCTCAGTATTTTGCCtttgtttctgtgatttttaattttaacattctATTCAGGGACCACACCTTTACTAGTGAAACATCAGTGACTGCTCTAGGTCGTTTAGCCATACAGAACATATTAAGGTGTGGAAGACCATAGGTGGAAACCAAACTTTGTGCTTGAGTATGTTTTACACTAGTCAGAAATGGGAACAATAAACGTAAACAATGGCAGAATGCTCAGATACGTACAAAATGACTTCAGGAGTGATTGCTGATCTTCATTGTTGGTTGACAACAAATCTCATGGAAATGctatatattgctttttttcctgcatactacatttaatatatattaatctaaaatagtacattttgaaaattactAAGTCTGCTCTCTTctttaaggtgttttttttagattttaggtTTTTTTGGGGTATGGGAGGGTAATTTGACTCATCCACTAATTGCAACTTACAATTTCAATAACAGATGGCAGCTTTTTATTTGACACCACTGGATCAGGGGAATGCTGTGATTTACCCTGATATTTTTTGTCTGAAGCAAGCTTACTAAGGCACTATATGTATTCTTCATGGTGCAGTGCAGTAAAGCATACGATAACACTGTAGAAGACAGTAAAACCATTTTCAAagtgcaattatatatatatgtatatatgtagtcTTTATGTAGTTGCTGCTGCAGACTGCATGCTGTTTATTAGAATAAATGGCTTTTCTGAAGGATGTGCTTCATTTCTCGACTTCTATGACTGTGACTTGGTGACATTCCATTCTACCTCTTCCTCGTACCTCAATCCTTGATGGTGTAATGCAAAACCACAGGGAACTAAATTGAACTGATTGCAGAGGAATTGTACAAGAGACTTGGGAATTTGGGGTTGTGTTGATCAGTTCCAGGTTCTATTAAGAATATTTGGAGGTTAATCGTGAACCTGAACATTGGTGTGTGTAAATCTCAATTTGAGTAGTCTTGGTTGAGATTGAGTGACCATGAATGGAATTGTTGCTAGTTATGGAGAAGACACTGCAAATAGTAGATTTCACATGTTGAATACTGACTACATGTGTCCTGGGCCAATGCATTTAATGCCCACCAGGCAGAGCTTTTTACAAAGAGGTATTTACAAATGAGAAATAATGAATCTGTGTAAAGCAAGGTAGTTCAAAGCCTCTTCTGTTTTGATGCTGTTATGAAAATATAGAAGCAGTTTTGTCAGtgaacaatttgaaaaaaatgtaaagactgTTTTTagaatacctttttttttaatgaatgtcttTCCTTGTATATACAACTTTTTTATATGTCAGAAACCGAATGTAAAGCTTTCATGTTTTTAGTTATTGTGAAGTTCTTTTTTACATTGTGCATATGGAGATGATCATATAAAACTAATAAAGAGTTTTTCAATTGTTCTTCACCTGATAAAGTCAACATGCCACTTTTTGTCCATAACTGCTTCAGGCTATCTACGGCTAAAACATCCTATATAGTAGGTGGACTCTGGCACAGACTCATTTTGGTGCCAGCAAATCCGCATAGCAACCCACACGTTAAATGAAGCTGGCCCGAATTTGGTAGAACTAAGCAAGCCATCTTAGCTGCGGATGCAGTCCAAATATTGACCACTGTGAAAACAGTGATTATGgtgaaaactttttttccccattctcGTCAAGTTAATCATCTTTAATCACCTGCTACAGgtagaaatgtgtatttactagaaatataatttacagtttttcacaattgcttgagcacatttgtccaaacagaattcactttttcaaaactatGAATAtgcactgaaactgaaacaaacacactgtcCAAAATGACATGTATCAAGActctcaaaacaaaatcaaatcagtccATCAAAACAGTATAATTTGTCATCTAATGAAAAGTTCTTTCCATTAGCAATTTCACAATGGAACAATAAACCTTACCTGTACAGACTGGAACGTAATCTCATATTCCTGTCAAAGGTACCTATACAGCTGTTTCATCCTTAGTTGGTGTCCATTCAACACCTGGTCAGTAGTAGCCAGAATGACACCATgtatattctgaaatatttc

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K18592 GGT1_5, CD224; gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148240 lncRNA upstream 172583 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 271658 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 278154 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 294631 19456142 ~ 19456983 (+) True G118285
TU148164 lncRNA upstream 524181 19223374 ~ 19227433 (+) True AMCG00018732
TU148377 lncRNA downstream 222172 19994126 ~ 19994329 (+) True G118410
TU148570 lncRNA downstream 507334 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 530716 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 600265 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 605334 20377288 ~ 20381442 (+) True G118601
AMCG00018757 mRNA upstream 18839 19729815 ~ 19732775 (+) True AMCG00018757
AMCG00018751 mRNA upstream 37652 19706575 ~ 19713962 (+) True AMCG00018751
AMCG00018754 mRNA upstream 49823 19687584 ~ 19701791 (+) True AMCG00018754
AMCG00018744 mRNA upstream 67052 19678771 ~ 19684562 (+) True AMCG00018744
AMCG00018745 mRNA upstream 73675 19676622 ~ 19677939 (+) True AMCG00018745
AMCG00018753 mRNA downstream 33884 19805838 ~ 19851791 (+) True AMCG00018753
AMCG00018758 mRNA downstream 102374 19874328 ~ 19889731 (+) True AMCG00018758
AMCG00018759 mRNA downstream 187784 19959738 ~ 19966779 (+) True AMCG00018759
AMCG00018762 mRNA downstream 201624 19973578 ~ 19974366 (+) False AMCG00018762
AMCG00018764 mRNA downstream 254998 20026952 ~ 20035662 (+) True AMCG00018764
TU148213 other upstream 300986 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1030271 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1769311 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1769500 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2681944 17068212 ~ 17069670 (+) True G117786
TU148369 other downstream 199185 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 487423 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 602042 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 742206 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 820782 20592736 ~ 20593016 (+) True G118635

Expression Profile