RNA id: AMCG00018757


Basic Information

Item Value
RNA id AMCG00018757
length 1593
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00018757
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19729815 ~ 19732775 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCAAGAAAAGCCGGATGGTAGAGATGAGGAAGGAGAACTGCACCTGCCCACCACTTCTGCTGAGGATGCTAGCATTGTAGACGATATTAGCATCCCCAAGAGGGCCCAAGATGGCCAGTTCTTCAAAAATACCCCGCATGGCCATTTGGAAAGAAGTTTTAACAAAAGCTGGCTGGATCAATATGAATGGCTGGAATACAGTGTGTCCAAAGATGCAgggttttgctttgcttgtctgcattttttaaaacgAGGGCACGGATGTCATGTGGGGCCAGCATTTAGTGACAATGGATTCAATAACTGGCAAAAAGCATCAGCATCTCTGAAGAGTCATCATGAAAGTGTGGGACACAAATTTGCTATGGAGACATGGAGTgagtttaaacaaaaacaggcaAACGGCTCAAAAATAGCAAACATGCTTGACAAGGGACATTCGGCGTTGGTTATGGAGAACCGAAAGTACATGAAGGCCATGGTGGAAAGCCTACGCTATACGGCTTGCCAGGGGATCGTACAGCAAGGTCACAGTGAGGGTGAGCAGTCGTCAAATAGGGGTAATTTTCGCGAGCTTCTGCGTGTCATTGGAATGTTTGATGCAACAGTCGAAAAGAAGTTAGCCACCAATTCATTAAATGCCAAATACATTCACCATGACATACAAAATGAGATAGTTACTTTAATGGCTGATATGATACGAAAAGAAATACGTGATGAGGTAAGGGATGCAGTGCACTTTGCTGTTTTGGTGGATGAAAGTAAAGATGCTAGTAAAAAGGAACAGGTTTCAGTGATCGTGCGGTATTTACAGCCAGTGTCAGAAAAAGTGCAGGAAGAGTTTTTGCATTTCACCGCAGCAGATGGGTTAGATGAGGAATCACTACTAGCCAGCATCAAGCTGCAGTCGGTAGAACTCAAGAAGCTATGTGACACTCGCTGGGCATGCCAGTATAATTCAATCTGGGCAGTCAAGAAAACTCTACCAGCAATCCGGGCTACCCTGCGTGACATCATCGGCCAGTCAAACCCGCACCGGAGGGCAGAGGCAAGAGCAATCAGTGCAATCATCGATGAGAGGTTTGATTTGCACCTTATTCTTTTCGAGGATGTATTTAGAATAACCAAGTTTATGTCTGATCAGATAAAGTCCCCCACTTTTGATCTTGTAGCGGCAGATGATCTGGCCCAGTTGTTAATGGAGATGAAATGGCACTTTTCATCAGAGACAAATTATGTACTGAGCGGTGTGACAGCCCTAAGCCCCAAACACACATATTTTCTAGACCAACAACGCATACTACCCATGGCCCATCATTATGGAATCAGTGAGGAAAACTTGTCTGCAGAGCTCTACCAGACTCGCCAGCTACTGCAAAGAAAAGAGGAACAGGGACACTCTATCACCAGCACTCAGGAGTTTCTGTACCTCATGAGGCCGTACAAAGATGCATTTATAGACATGTACAAACTCATATGCATATCTCTGACACTTCCCATCACATCAGTAAGCTGTGAGTGCAGTTTTTCTTGTCTGCGTCATTTGAAAAACTACTTGAGGAACGGGGACTGGGGACTCTCGAACCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148240 lncRNA upstream 150784 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 249859 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 256355 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 272832 19456142 ~ 19456983 (+) True G118285
TU148164 lncRNA upstream 502382 19223374 ~ 19227433 (+) True AMCG00018732
TU148377 lncRNA downstream 261351 19994126 ~ 19994329 (+) True G118410
TU148570 lncRNA downstream 546513 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 569895 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 639444 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 644513 20377288 ~ 20381442 (+) True G118601
AMCG00018751 mRNA upstream 15853 19706575 ~ 19713962 (+) True AMCG00018751
AMCG00018754 mRNA upstream 28024 19687584 ~ 19701791 (+) True AMCG00018754
AMCG00018744 mRNA upstream 45253 19678771 ~ 19684562 (+) True AMCG00018744
AMCG00018745 mRNA upstream 51876 19676622 ~ 19677939 (+) True AMCG00018745
AMCG00018746 mRNA upstream 93081 19612625 ~ 19636734 (+) True AMCG00018746
AMCG00018752 mRNA downstream 18839 19751614 ~ 19771954 (+) True AMCG00018752
AMCG00018753 mRNA downstream 73063 19805838 ~ 19851791 (+) True AMCG00018753
AMCG00018758 mRNA downstream 141553 19874328 ~ 19889731 (+) True AMCG00018758
AMCG00018759 mRNA downstream 226963 19959738 ~ 19966779 (+) True AMCG00018759
AMCG00018762 mRNA downstream 240803 19973578 ~ 19974366 (+) False AMCG00018762
TU148213 other upstream 279187 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1008472 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1747512 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1747701 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2660145 17068212 ~ 17069670 (+) True G117786
TU148369 other downstream 238364 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 526602 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 641221 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 781385 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 859961 20592736 ~ 20593016 (+) True G118635