RNA id: TU148369



Basic Information


Item Value
RNA id TU148369
length 556
RNA type TUCP
GC content 0.46
exon number 4
gene id AMCG00018762
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19971139 ~ 19974730 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTGACGGGGCCTGGTTGCGGGGCTGCGCGGCGCTTCAGCGCTTTATACCGTGAAAACGCAGCAACTGACTGCAGCGGAgcaacatttaacacaactgTGTTGGCTATTCAAAGTGTTTTGACAGAGGACGTCATGCCCCATTTGAAAAAGCCTCAGAAAGCAGAACCTCTGGTAAAGGAATGGGACAGGAAGGCACAGAAAAGTGGATCGAGGCACACGGTTTATGCAGTCAATGGAGATGAATATACAGGGGACTGGCAAGACAACAAGAAACACGgaaaAGGGACACAAATCTGGAAGAATACAGGAGCCATTTACGATGGGGACTGGGAATGTGGCAAACGGAGTGGTTATGGGACATTGAGCTTGCCTCATACCGTCACTGGAGAATATGTAAAAGTTTATTCAGGAGACTGGAAGAATGATAAGAAGCACatgcccttatccagggcgacttacaacataagtgcaatacaaagtgcaagaatacagttaagtacaattacatggaaatgtaattgcatgttttcgtgttctgtgcagaatgacgTTTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU148240 lncRNA upstream 392108 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 491183 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 497679 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 514156 19456142 ~ 19456983 (+) True G118285
TU148164 lncRNA upstream 743706 19223374 ~ 19227433 (+) True AMCG00018732
TU148377 lncRNA downstream 19396 19994126 ~ 19994329 (+) True G118410
TU148570 lncRNA downstream 304558 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 327940 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 397489 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 402558 20377288 ~ 20381442 (+) True G118601
AMCG00018759 mRNA upstream 4360 19959738 ~ 19966779 (+) True AMCG00018759
AMCG00018758 mRNA upstream 81408 19874328 ~ 19889731 (+) True AMCG00018758
AMCG00018753 mRNA upstream 119348 19805838 ~ 19851791 (+) True AMCG00018753
AMCG00018752 mRNA upstream 199185 19751614 ~ 19771954 (+) True AMCG00018752
AMCG00018757 mRNA upstream 238364 19729815 ~ 19732775 (+) True AMCG00018757
AMCG00018764 mRNA downstream 52222 20026952 ~ 20035662 (+) True AMCG00018764
AMCG00018763 mRNA downstream 83108 20057838 ~ 20083148 (+) True AMCG00018763
AMCG00018768 mRNA downstream 120395 20095125 ~ 20097742 (+) True AMCG00018768
AMCG00018769 mRNA downstream 124333 20099063 ~ 20111187 (+) True AMCG00018769
AMCG00018767 mRNA downstream 137173 20111903 ~ 20119142 (+) True AMCG00018767
TU148213 other upstream 520511 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1249796 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1988836 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1989025 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2901469 17068212 ~ 17069670 (+) True G117786
TU148559 other downstream 284647 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 399266 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 539430 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 618006 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 618636 20593366 ~ 20594139 (+) True G118636

Expression Profile