RNA id: AMCG00018764


Basic Information

Item Value
RNA id AMCG00018764
length 3358
RNA type mRNA
GC content 0.40
exon number 11
gene id AMCG00018764
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20026952 ~ 20035662 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGAGCTGAGTTCTGGCGAGGGTAGCGGTGGACAGCtgtggcggcggcggcggcggcggcggtgTGCttatggagggagagaggagagagagagggagagagaaagcggGGTCTGATACAATGTCACTACAGAGGTGCCAAGCTGAATGGGAAGAAATTGATCGGGAATTCCAGCAGCTACAGgaAACGCACAAAGTGTACAAACAAAAGCTTGATGAACTCACCAACCTCCAGACGATATGTAGCAATTCCATTAGCAAACAGAAGAAGAGTCTGAGTGACCTGAAGCACAATCTCCAGAGgtTGTACTTAAATTTGGTACTGGGGAATGTGAATGTAACACTACTCAGCAATCAGGCAAAATTTGCCTACAAAGATGAATATGAAAAGTTCAAGCTCTACATGACAATAATCTTGTTGCTTGGTGCCATAACATGCAGGTTCCTACTAAATTACCGgGTGACAGATGAAATCTTTAATTTTTTGCTGGTTTGGTATTACTGTACACTGACCATAAGGGAGAGTATCCTCATCAGCAATGGGTcaagGATAAAAGGCTGGTGGGTTTCACACCACTATGTTTCAACCTTTCTATCTGGTGTCATGTTAACATGgCCGGATGGATTAATGTATCAGATGTTTCGAAACCAATTTCTGGCATTCTCAGTATATCAAaGTTTTGTACAGTTTCTGCAGTATTACTACCAAAGTGGCTGCCTCTACAGGTTACGAGCTTTAGGGGAGAGAAACCATCTCGACCTCACAGTTGAGGGTTTCCAGTCCTGGATGTGGAGAGGACTCACCTTTCTTCTTCCGTTCCTGTTCTTTGGCCACttCTGGCAGCTTTATAATGCGGTGAAATTGTTTGGGTTGTCCAGCCATGAAGAGTGCAAAGAATGGCAAGTGTTCATGCTGGGCTTGACGTTTCTCATCCTCTTCCTGGGCAACTTCCTCACTACGCTTAAAGTTGTCCACCAGAAgtttcagaaaaacaaagacaaggtGAAGAAAAAAGAGTAAAGCCAGTTAATGCAGGAGCAGCTGGTGGCAGCGGTGGTGTAGAAATCTCTTCACCGAGACCTCGGGGGGTGGAGAAgatgaggaaaacaaatgttttgccGTTAAATGTGTCGATACTTTTTATATGTACAGTTTAAAAACCCAGCTGGAGGAAAGGGAGACATCTGCTGCTATCTGAAGTGACTCCATTACAACTACAACTAGAATCTCACTAATTTCCCCTAAGGATCATCATATccgttttttttaatactctgtGGACATGTATATTGAAGACCGGTTGGATCCCGTAAAACCTGAACCACTAAATAATTGATCTTGTGAGAATGATGAACTGTTCTTTGCTTGTTTTCCTTCCCCAAATCCTTTTTAACCTATATGCCAAGACCACGTTGcaccatttaattttttacaaaCGGATTTTGCAGATCTGCAGGTGTTAATTCACTCCATTCCACATTATTTAGTAGACATACCAGTAGATCCATATAACGGGAAACGGCAAAAGTAGTTGTCTAAAATGTTCCGATCTACAAACATCACAATATGGCTGGGTTGgtgtaaaacaaatgcaattatgGAGTTTTCCCCTTTGCTTTTTGTTGCATAATTCACTTTTGTCTCATtatcattaaatataacatatGTGGTGTTTTCCTTAGCAGTTTTAAGATCCCTCTGACCCTGTGATATTGATAGTACTGAGCTGATTTCCAATTTGGTTAAGGTGTTGTGTCCTGTTACATTTATGAGAAGCATCCGAATACAAAGGCAGGAGCTTTGTTAGATGCTTctgttgatttaaatgttataccCAGTGTAGTAAATGCCTGCATTGACAGTAATTGAGCAAGCCCGAATGGAAGTGATCACCCTGCTTAAATGAAAGTCAGTCACTACCACTGCAATTTCAATTTGCAGAATGAAAAGCAAGTTTGTAATTCCTGCCAAGTTAACCACTCGTATCGATTGTTATTATGCTGGGGTTTTTTTTCATGTGGTGACATTCCCAAAACTATAGCCCGCTGTTGGGATGTGATGTGTGGAATGACTCGTCTGATTTTGAATATCTGGTCTTTAAAACGTGATTGAATCATAAAATTGTTCTGCAAGCAGTATGGGTTCTAGAATGCTCTTGTGGGGGAATAGAGGAATGAAAGAACCACAGCTTGTGATTTCTCATGTAGAGACTTGAATTCACTATTCAGGATCTGTTTTCCTTGGTTATatattgttgttgatgttggttgtttttttaattaacactttcACAGCTACACGTTTTAATTTTGGTTGGTCGATCAATAAGAATATGCATATGCTTATTTTTATACAGAGGAAATAACTTTGCTAAAAGTCTGATATAATAATGCTGTCAGTTCTAAGGGATGGTCTTTGTTATTAGCCCGAgtatagttttgtatttattgtggaCATCTGCTGCACATGAAAGCTGCTAAACCTCTGAGGACAGTGTTAAGAGCAAAACTCTCGGGGTTACAAGGGCCTGTTGATTTAGTGTTCtgttttgtacatatttatgcCAACAATGTGACAAAGCCATATATAATGGACTGCCCATTCATCGTATAACGAAACAAAAGGTCATGTATACAGAGAATTGTGCATAATTTTTACCAAACTGCGATAGGGTGCAACTATTTTTTTGTAGATCATGCACTTCAGAGATCAAAATGATGTGAGAATTCAGTGGCAGGGTTTGAATAATGCCTTAATTTTCAGTAACCTGGATATCACTGCCCTACATTATCACGGtaatttttttctccacattaaaaaaatacatttgcaaatggtCACATCATAACCAGGCAAAGCTGTAGACTTCAGTTTTGTCCTTGTAGACACATTTGCGTTAGTGATTGATTCATAACTGTAGATTTAACTATGAAAGGGGAGTGTGATTTTACAGAATTGGGAAAGTCTGTTTGGGATTTTTCTGTGGTAAGGGAAcagcaatgtttatttaaagaaagctattttattttcactttttctatTTACAGAAGAACTAATACTAAGTAAATTGAGCCGCCACTACGCACAGCAAAGTTgacttttggttttgttgttttgcagcaGTGTGTTCCTGCTGAGTCTGTGGTGTGGTGTTCTTTTATTGACAAAggttgtgcttttcttttcagtgttaTGAGTTTTGCTTGCCCTGCAGAATGATTGTAGTGTGTGCTTGGATGTCTGGAGCTGTATTAAAAGagggatggaaaaaaaataacttggaTATTCTGCATATAAGGTCAAATTCTTCCATAAATCTCAAGACTTGGTGTAcattgctgtaaaaaaaaaaagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148377 lncRNA upstream 32623 19994126 ~ 19994329 (+) True G118410
TU148240 lncRNA upstream 447921 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 546996 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 553492 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 569969 19456142 ~ 19456983 (+) True G118285
TU148570 lncRNA downstream 243626 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 267008 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 336557 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 341626 20377288 ~ 20381442 (+) True G118601
TU148629 lncRNA downstream 403298 20438960 ~ 20443229 (+) True G118608
AMCG00018762 mRNA upstream 52586 19973578 ~ 19974366 (+) False AMCG00018762
AMCG00018759 mRNA upstream 60173 19959738 ~ 19966779 (+) True AMCG00018759
AMCG00018758 mRNA upstream 137221 19874328 ~ 19889731 (+) True AMCG00018758
AMCG00018753 mRNA upstream 175161 19805838 ~ 19851791 (+) True AMCG00018753
AMCG00018752 mRNA upstream 254998 19751614 ~ 19771954 (+) True AMCG00018752
AMCG00018763 mRNA downstream 22176 20057838 ~ 20083148 (+) True AMCG00018763
AMCG00018768 mRNA downstream 59463 20095125 ~ 20097742 (+) True AMCG00018768
AMCG00018769 mRNA downstream 63401 20099063 ~ 20111187 (+) True AMCG00018769
AMCG00018767 mRNA downstream 76241 20111903 ~ 20119142 (+) True AMCG00018767
AMCG00018770 mRNA downstream 85547 20121209 ~ 20151726 (+) True AMCG00018770
TU148369 other upstream 52222 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 576324 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1305609 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 2044649 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 2044838 17981210 ~ 17982114 (+) False AMCG00018681
TU148559 other downstream 223715 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 338334 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 478498 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 557074 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 557704 20593366 ~ 20594139 (+) True G118636

Expression Profile