RNA id: AMCG00018765


Basic Information

Item Value
RNA id AMCG00018765
length 2993
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00018765
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20036729 ~ 20050243 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTCGGCTGCAGGTTCCTGTGAGCTCTGGGGAGGTTAACCACATTCCGGAGTGACTACTTTTGGGCTTCCGGACTATATAGAGAAGACAGGCAGTATTGCAgctgtctaaaaaaaaaaaagaaacctaagAAGATATCATGGGATTATGATACTTTTACCTGGCTTTTCTGGTACTGTTCATATGGTCAATTTTTTCCATTCTACAAGGAAAAGCTCCATCATTCTTCAGCCACACGTGTAGGGGTTCAAATGAGTGGGCTCCTGCACTCCACGGACCACGGGAGATATATACATTTGGTTGTTCTGCTACTGCCGCTGATACTCAATTGATCGAAAAGCAAAATGTCCCACAATGGCACAGTACTGAGCAACGGTACCGAGAGGAGCCGTGACGAACTCAAAATCGTGATTGTGGGCGATGGAGGATGTGGAAAGACCTCTCTGCTCATGGTCTACGCCAAGGGAGACTTCCCAGAGAAATATGCCCCTTCTGTGTTTGAGAAGTACGTCACGACCATTCGATATGGAAGTAAGGACATCAATCTGAACCTTTACGACACAGCAGgTCAGGAGGATTACGACAGACTGCGACCACTCTCCTACCAGAACGCCAACCTCGTGTTGGTATGTTATGATGTCACCAACCCCACCAGCTTTGACAACGTCTTAATCAAGTGGTTCCCAGAGGTTAATCACTTCTGTCGTGGCGTTCCCATCATCCTGATTGGCTGCAAGACAGATCTGCGGAAAGACAAAGAACGTACCCGGAAGCTCAGGGCGTTAGATCAGGCTCCTATAACTTATATACAGGGCGAGGAGACAAAGCGTCAGATCAACGCAGAGCTCTACTTGGAGTGTTCAGCCAAATACAAGGAGAACGTCGATGACATTTTCAAAGAAGCCACCAGAACAGCACTGACAGCCATCAAGAGAGCCAAGCACCCACGGAAGAAGAGATCGTCGTGTGCAATACTGTGATACACGGTTCAGGGACTGCGTACAAACCCAGATGGACTGGAACTCTTTCTACTGCTGCACTGTTGTcgttgtttatttgtattcttcctGCTACAAGAGTAGCACATTTCAAaggttgattattttaattacatgtattatgATGTACAAAAGGACTTGGATACCAGGGTCATTCTCACCAGAATGATTTTGAAAGACCTTGGACATCACAAACTGAACAAGCACCGAGGTGTGGATGAGAGTCTTTTTTATCGCACATCATCTCTTTTGTACTGCACGTCTTGGGAATCTGTATTGACAGGAAAGAACTGGAATTTCTGGAAAATCTGCAAGGGAGGAATTCTGGGCTGCTAGCTTGTCAATCAGTCCcaattatcttttattttattattattattattattattattattattattactattattatgactCTCTCCACAATTGAAgcagaaaacattcaaattcacacaatgtatttttttagcaaacaaaaagcaactAGATATCATTTGATTGATATCAAAGCCAAGTGTGTTACATTCAACAAAGTGCTTCCGTCCCTCATTCCTTCAATAGCAGACTAAAAAccccaaatgagcacgatggttTGAAGGACTTATGTTTGTATCCAATTAGTACACTGAGACCATATCTGACTAAAAAGTGGATTGTGGGTCATAGCTGTGTTTTCTTCTCCCTTAGGGCCACATTGCAATCCACACACAGAAGCACGAATGTCAACAACTTGTCCCCTTACTGTAAACAAGCCACAAATTGCGATTCCTGTAACAAAATAAAGCCCTCTTGCAGATGCAGCTATAAGTCTCAAAATAAAGTCAATCATGACAAGTTACTGGATTTGTGATTTGCCTAGAGAGAtaagaaattatttattgttattggtaCTTACCGTCCTGCTTTTTAGATTCCAGGCCTGTGCTTTTTCAGGACTTGGGAGAGAGCTGACACCTCCCACTGACTCAACTCTATCTGCCTTCACTGCTGGTGTTGGGCCCCATGTTTTGACTTGTACCATTAACTGCTCCAGGGGGGTCTGAcacaattgttatttaaaacacaacatttccTAATATTTCCAAATGCCCCGTGGGAATGCTGTGGCTACCAGTAGCGTCTAACCCTGTCGTGGGAAACTAACCAGTCCAACCACATAATCTGGTTGGTGCACAGATGTTAGACACAAACTGGAATGTATAATTCAGTCTTGCTCGGATGGGAGGTGAAGCCAGTCACTTCTAAAAGATTCCTCTGCAGTTTAAGGGAGAGAAGATCACATATATATGGTCCTTGCATGCAGCAGGGTTTTCTGGTTTCAGATCTACCTGAGCGCCAAACTGAACTCATGCTTTGCTTGCATAAAACTAAAGTATGATTCTAGCATGATGAGCAATTGTATTCCGTAAAACCCTCTCCTGAGTCCTGGAATGACCACCCAGTTGGTTTGAAAGGGTTTCACTTTCAAATCGCCAACACCTTCAAAACTGATTTCTGTATTCTGAGTCAATCATGAATTCAGTTAGGAACTTAAATGGACTGAAAATCTGATAACATCACACTCTGCACTCCTTCTCCATGTGCTTTTATCCTCTCCTGGTGAAAAGTAGATCACACAAGAATGCAGGCTTTTCAGTTCAAGTGCCAGTTTTCCTGCCTCAGTTCTTTTCATGCTGACTTTAAAAACTCCCACAATCCCTCGCTTTGGTCCTCCATAGAAAAACAAGCAGTACCATTTGAATGGCTTTCCTGCTTTGATTGTTGAGGTGCTGAAAACTGTTGTTTCTAGCAGCAGACTTGTTTAAACAGCCTTTCCAgggtttgtttctttgatgCCAGTGTGCAGCTTCACCAACACAAAATGTGCAACTTTTGTACACTTACACAGCAGTATCAGTGAAGTCCAGCAGTGCCAGCTCAAAGGTTTGTACTGTTTTGGGCAATCACATGGAATCTCGTGACACTCTGGACAAAAGACGAGTGTTGAAACACGGG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07872 RHOF, RIF; Ras homolog gene family, member F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148448 lncRNA downstream 1072 20033210 ~ 20035657 (-) True G118466
TU148418 lncRNA downstream 42370 19994143 ~ 19994359 (-) True G118440
TU148241 lncRNA downstream 457697 19577014 ~ 19579032 (-) True G118305
TU148235 lncRNA downstream 504586 19499525 ~ 19532143 (-) True G118299
TU148230 lncRNA downstream 567019 19467808 ~ 19469710 (-) False AMCG00018742
TU148452 lncRNA upstream 6236 20056479 ~ 20057545 (-) True G118469
TU148455 lncRNA upstream 8729 20058972 ~ 20059409 (-) True G118470
TU148459 lncRNA upstream 23108 20073351 ~ 20074161 (-) True G118474
TU148460 lncRNA upstream 26582 20076825 ~ 20077042 (-) True G118475
TU148461 lncRNA upstream 27033 20077276 ~ 20077892 (-) True G118476
AMCG00018766 mRNA downstream 4222 19991333 ~ 20032507 (-) True AMCG00018766
AMCG00018760 mRNA downstream 79462 19923370 ~ 19957267 (-) True AMCG00018760
AMCG00018761 mRNA downstream 123457 19894850 ~ 19913272 (-) True AMCG00018761
AMCG00018756 mRNA downstream 164835 19864992 ~ 19871894 (-) True AMCG00018756
AMCG00018755 mRNA downstream 244387 19778769 ~ 19792342 (-) True AMCG00018755
AMCG00018771 mRNA upstream 36897 20087140 ~ 20094506 (-) True AMCG00018771
AMCG00018777 mRNA upstream 168134 20218377 ~ 20225057 (-) True AMCG00018777
AMCG00018780 mRNA upstream 178928 20229171 ~ 20279538 (-) True AMCG00018780
AMCG00018778 mRNA upstream 253521 20303764 ~ 20309717 (-) True AMCG00018778
AMCG00018779 mRNA upstream 262942 20313185 ~ 20321631 (-) True AMCG00018779
TU148412 other downstream 48561 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 989152 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1562484 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2432881 17603356 ~ 17603848 (-) True G117899
TU147640 other downstream 2780458 17226090 ~ 17256271 (-) False G117823
TU148462 other upstream 27845 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 394254 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 439968 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 553275 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 553275 20603518 ~ 20605820 (-) False AMCG00018794

Expression Profile