RNA id: AMCG00018769


Basic Information

Item Value
RNA id AMCG00018769
length 3387
RNA type mRNA
GC content 0.52
exon number 21
gene id AMCG00018769
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20099063 ~ 20111187 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCACTATCCCAGCATGCTCTGCCGTATCTAAGCAACGGGACGCTCTGCACTGGCAGTTCAGATACAGAAGTGTTGTTGGGGGTTTGCCGACTATTTTCCAAGGATTACTGAGACACCGGGAGAGAGTCATGTCACTTGCTGAAGAAGCACCTGTCATTGACCCAGTGTCAGGAGAGGAAAGCCAGCCTGTGACGGAGGATGAGCATCTCCTGGGAGAGTCTTCCCCGAGCCCTGTAGAAGACCTGGGAGGAGACGAGCCTCTAAGCCCGTCTGACAGTAAGGAAGCGCAGCAGACGgggggagaagaggagaaagaggagggtGAGAAGCTGGACACCGCAGAGGACAGCAGGACAGATGAACCCCGAGAGGATGAGAATCAAGGTAAAGTGGATTTTGGACAGGGAGACGAGGACTTGGGCGAAAAAAGTCCAAGCTCAGAAGACAAAATTGCTGAGGAGGTAAACCGGGCAGGCAAGGGTGTACTTCCCAGGCAGACAGATGCTGTGAGCAATGGCCAGCAGCCCTGTGAAGATGTGGGGCAGGCAGACCACTCCCAATTATACACTGCCTCCCCTAGGACTCTGTTCGAGGAGGAGCCCCCCGCAAGCAGAACTCACCCGCTGACTCTAGAGTGGGCTTTTGGGATAAACAAGCACCTCCCCGTGTACAGTCTTCGGGATGACGACAGGCGTGTGATCCTGTTCGGCTGTGCCCATGTTGCAGGTCACTGCAGCCCCATTTCCTGTCTTTGTGTCAGTGAGGACAGGAGGTGGGTGGCCACAGCTGACAAGGGTCAAGAGAGCTTGGTGATCATATGGGACTCGTACTCAGGGATTCCAGTGCAGACTCTGTTTGACTGCCATCCCGGGGGGGGTGTAGTGGCTATGTCATTGACAAAGGACTCAAAGTATTTGGTGACAATCGGAGCAGAAGCAATTCAGAGAGTCTGTATCTGGGACTGGACCAATGAGGTAGAAGGTCCTGTTTGCATCACAGAACTGAGTCCAGAATATGGCTTACAGAATTATGTCATTTTCAATCCGAACGACAGCTCACAGATCATCAGCAACAGCGGGAACcaggttttgttttacagctgGGACAAAGGACAGTTGGAGTACACAGCCCCACCACTTACAGATAAGTCATTCAAAAAGGTTGTGGGATCTTTCAGTCAGTCCATCTTCCATTCTGGAGGGTCCTTGGCATTCACTGCCACCTCAGCGGGGAACCTGGTGCTCTGGGACACCGTGCGCATGCCAGCGCCCCTGCGGCCCCATAACAAAACAGCCACCAAACTCATATTCCTCCAGAAGGATGGCATCACAGTGCTGACCGTGACAGATAGCTTCATAGTAACTGGTGACACAAGAGGCCATGTGAAGTTCTATGATGAAGAACTCAAGCTGATGACCTGGTATAGTCACTTCAGTCTGGAACCGGTCCGctccatttccttttcaaaagaGCCTCCTTCTCCAGCCAAACACACCACAGGATATCCAGCAGACTGCACTCTTCAAGCCAAGCAGTTTGCTGTGAGAAATTTTGTGATATCCACTACAAATGCAACTGTGATGCACATAACTGCTGAGGGAAGTGGGCTGGAGATGTTAGTGCAGGAGCACTGTGAGGCCGTGCATGCTGTGGCATGTCACCCTGCCCTGCCTCTAGTCTCCATGGCAAGCTACTGTGGAATCCTCAAGGTGTGGGACTATCAGCGCAAGAAGTGTATCTGCAGCCGGATCTTTGAGAAGGAAAAGCAAATCCAGTGCATGGTGTATGATCCTCAAGTTGGTTTTGCCAGCGGCAGTGTTTATGTGCTTGATGCCCTAACCCTGGATAACGAGTGCGCGGAACCGTTTAGATATGCCAGGGAGGGCATTACCCACATCGCCTTCTCCAGGGACTCTCAATACCTTGCCACTGCTGATGCCGGGTTCACTGTGACTGTGTTCAAGCTCTGCTCTGACAGTGGCAAGCAGGTGTGGAAGTACCTGGGCAGGCATCGCTCCCACTATCAGCCCATTCAGGACCTCATGTTCGGGCTCCACCTGGACAGCGGTCAGCCCAGGCTCCTGTCTCTGGGTATGGACAGAGTGTTGGTAGAATATGACCTCAACAGCAAGGAGGACGACTTGAAACTTCTGAGCAAAGACCGCATTGAGCAGAGTGCTGTGCCCAAGTGTATGGCCTGGTACCCACCACTCACCAAGGAAAACTTCATCCTTACTGTCAATGACCAGTACAAGATGAAGCTCTTCAACTGCACCACCAAAATGTGCAGAAAGACACTTCTTGGACCAACATATGGATCTCCTGTTGAGAAGGTGGCCGTCCTTTCTGTCTCAAGTGCTAGAGACCCCAGTGCTGGCTATCTCGCATACATTACCAAAGACAAGGTTGGCCTCCAGATCCTGCCAGTAGATGGAAATCCCCACAGGACATCTGCCCTCATCTGTCACCCGACCGGGGTCTCCAGCTTCGCCTGCTCCTTTGACAGTCGCTACATCTTCACAGCAGGGGGCAGCGACTGCACTGTGCTCGCCTGGGAGGCCAACCTGAATGCTCTGGAGGCAGCAGCGTCACTGGGTGGACAGGACCTGACCCCATTTTATGACCTTCTGGAAggggggagagatggagaattCTTCAGGGAGCTGGAGGACTATTTTTACTATTGCCAGCTGCGCAATCAGGGAATTGACTCCATGGAGACCAGACAGGTGTCTACAAGCATCCCCCTGGCAGACATCCCCTTTGTGGAGGATATGCTCAATGAAGTCAAATTCAGCAGATATGTGGACACTGGAAAGTATTTGACAGACATCGATCTGGGGGAGTTTATTAAGCTGTATGTAAACCACCGTCCAGCTTTTGGGATTTCTAGGTCCGAACTGCAGCATGCGTTCGAAGTTCTGGGCTATAAAACCGAGACGGGAGAGAAAGCAGTGAACCGAGGAGAGCTACTACAGTTACTGCAGGCCAGAGGTGAGCACATGACGGAAGAAGAGCTGGCCGAGTACCTCTCCACACTGTTGGGGCTGAATCCTGAAGGAGGGAGGTCCGAGCTGCAAAGCTCCAGCTCTCTCCTGGAGAACGCACTTCCTGAAGACATCACACTGGACACATTTCAGACCAATGTTCTGGGTTTCCCCATCTTCACACCAGAGCCCGCGCTGTCTGATGAAGAACAGACGCGCCAGGAGGCCTTCTCCTCTTAGTGCCCCTCAGAACAAACCATCAGGGACGCAAGATCATTCAGTGGCTTCCAACTTGTTGCTTCTTTTCCACTTCAGAAGATGGCACCTGTTGTGAAGAGTCTTTTTCGTTCAATATCTTGAACATGTTTTTATCTATCGCACGAATAAAGTGATTTCATG

Function

GO: NA

KEGG:

id description
K24228 WDR66, CFAP251; cilia- and flagella-associated protein 251

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148377 lncRNA upstream 104734 19994126 ~ 19994329 (+) True G118410
TU148240 lncRNA upstream 520032 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 619107 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 625603 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 642080 19456142 ~ 19456983 (+) True G118285
TU148570 lncRNA downstream 168101 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 191483 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 261032 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 266101 20377288 ~ 20381442 (+) True G118601
TU148629 lncRNA downstream 327773 20438960 ~ 20443229 (+) True G118608
AMCG00018768 mRNA upstream 1321 20095125 ~ 20097742 (+) True AMCG00018768
AMCG00018763 mRNA upstream 15915 20057838 ~ 20083148 (+) True AMCG00018763
AMCG00018764 mRNA upstream 63401 20026952 ~ 20035662 (+) True AMCG00018764
AMCG00018762 mRNA upstream 124697 19973578 ~ 19974366 (+) False AMCG00018762
AMCG00018759 mRNA upstream 132284 19959738 ~ 19966779 (+) True AMCG00018759
AMCG00018767 mRNA downstream 716 20111903 ~ 20119142 (+) True AMCG00018767
AMCG00018770 mRNA downstream 10022 20121209 ~ 20151726 (+) True AMCG00018770
AMCG00018773 mRNA downstream 78403 20189590 ~ 20197104 (+) True AMCG00018773
AMCG00018772 mRNA downstream 91241 20202428 ~ 20207454 (+) True AMCG00018772
AMCG00018774 mRNA downstream 199971 20311158 ~ 20312556 (+) True AMCG00018774
TU148369 other upstream 124333 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 648435 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1377720 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 2116760 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 2116949 17981210 ~ 17982114 (+) False AMCG00018681
TU148559 other downstream 148190 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 262809 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 402973 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 481549 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 482179 20593366 ~ 20594139 (+) True G118636

Expression Profile