RNA id: AMCG00018770


Basic Information

Item Value
RNA id AMCG00018770
length 4329
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00018770
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20121209 ~ 20151726 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTGCGACCGTGCCGCCGGGCCCCGGTGATCAAGCCTGAACATGACGACGACTCGGACGCCGAGGAGCCAAACCTCGGGCTGAAGAAGTCGGACGGGCAGGAGCCGCAGATCATCCACAGCGGCCACTTCATGGTGTCTTCCCCGCACAGCGAGCACCCTCCCAAGAAGGGCTACGACTTCGACACGGTCAACAAGCAGACCTGTCATACGTACTGCTTCGGCAAGACCAGCACCTCTCACCTCTCCATAGACGCCTCCCTGACCAAGCTGTTCGAGTGCATGACTCTGGCTTACAGtGGGAGACTGGTGTCACCGAAATGGAAGAACTTTAAAGGTCTGAAGCTGCTGTGGAGAGACAAAATTCGCCTGAACAACGCCATCTGGAGGGCTTGGTACATGCAATATGTGGAAAAGAGAGACAACCCAGTCTGCCACTTTGTTACACCGTTGGACGGTTCTGTTGATTCAGAAGAACATCGCAGACCAGAGGCAATAGCCACAGAGGGCAAATATTGGAAACGAAGAATTGAAATCGTTATCAGAGAATATCACAAGTGGCGAACATATTTCAAAAAACGGTTACAGAAGCACAAAGATGAAGACCTCTCCAGCCTTCTCAAGGATGAGGAGGTGGGTGTCAGGCGAGCGAGCTGGAAAAGCCAGGATTCTCCTGTCCCCATGGAGATGGACCAGCTGTTCGACATGGACATGCTCATGTCGGAGTTCTCTGACACGCTGTTCTCCACCATCGCCTCCCACCAGGCAGTGGCCTGGCCCAACCCCAGGGAGATAGatttatttcatattgttcGTCAGCCTGCCTTATCATTACCTTCCCTATCAAACAGCAATTCTCCAACTCAGGCTTCCATTCTGCAACCTGTGAGCCTCTCCCCTGATCTCCCATCTGTGAGCCTGGACCACGAGTTCATTTCATCTCCGGGAACTACCTCCATCGTCACGGCTACGCCCAATCACAGCAGCGAGAGCAGCACTGCTCCAGACTCTACTTTCGGGCACAACTTTTTACCTCTGTACTCTGTGCCGGTGTCGGCAGGCGACACCAGCGCATCGGATCCCCCTCGGACCTCCCTTCACCCAACAGCCCAGAAGACCAGTGTGCCTCACCCCGGGCTGGCTCCGAGCAGCCAGGCCACTGCCCCCACCACCGTACAGACGCCCAAGTTTGAGTCGGTCATTACACACACTGCCTCTTCAACTGTGACGCACAGCGCTGCAGCCACCACCTTTGGTCAGAGCCCGGGTTTCACCCTGCAGGCAGTGCAGCACACCAGGGTGCCTTTGAAAACTGCACTGCAGCCCAGAGTGCGGCAGCCCCTGCCGCCCACGGCTGCCAGGCAGACCCCCCAGACTTTTGCGCTCCCAAAACCAATTAATCCTTCAAGCTCAGGAAAAAGGACAAAACACCTGCAGAAAATTGTGCCTGCAGGCCCCAAACCCCTTGCCTTTTTTACTCCAGGTAACCGAAGCCCTGATCCCTTCTGGTTTGGTGCAGgAACAAAGGTGACGTGCTATATGAGggtgtatttttgttcagttcCTATTCCAGGGCAGACCAGCGCCGTGATTGTAACCCCTGGCCCAATGAAAGGAGAGGGGGTGCCTACCACTGGTGTCGTTATTACCCCAACTGCCATTGGAAGGAGTACCGGGCTGCCAGAGTTCCACATATTACAGCAAGCGCAGAACTCTCCGCAACTCATCATCCCCAAAGAAGAGACAACGCCCTCCACGGCGTGCAGGAAACAGGCCTCCTCACCCACAGCTGTGCGCGACGGCCGCAGCTCTGGCAAAGCCTCCCCGTGTGCCTCCGAGCAGAGCACCAGTCCCCAGTCCCCACTCAACACCTCCACCGGCCTCTCTAAGCTTGACACACCGATCGGAATGAAGATCAGGAGAGGAAATCACATTTCAGCTGAACAAAAGAGAAGGTTCAACATCAAGATCGGCTTTGAAACCTTAAGCAGTTTAGTATCAACATTGAAGTCTCAGTCCAATGCAAAACCGATCAGTAATGCTGCCACCCTGCAGAAGACGGTGGAATACATTGCCAAGTTACAGCAGGAGCGGCTGCAGATGCAGGAGGAAGCCAGACGTCTCAGGGAAGAAATCGAAGAGCTCAATGCTTCGATCAACACTTGCCAGGAGCAGCTCCCAGCTACAGGGGTCCCTATAACCCGGCACCGCTTCGATCACATGCGAGACCTGTTTGATGAGTATGTGAAAAATAGAACTCTTCAGAACTGGAAGTTCTGGATTTTCAGCATTATCATAAAGCCGCTGTTCGAGTCCTTCAATGCAATGGTTTCTACGACCAGCACAGAGGAGCTGTGTCAGACCACCCTGTCCTGGCTAGACCAACACTGCTCCTTGCCTGTTCTGCGACCAATGGTGTTACGTACACTTCGACAGCTCAGCACCACAACCTCCATCCTCTCCGACCCCTCCCACCTGCCAGAGCAAGCGACGCAAGCTGTCACCCAGGGCAACACACAGACTGGAGAGTCTTAGCCGAGAGCTAAACTGGAGAGAGGGGACTGCTGTCGTTATTTCTTCCCCACCTGAGAGAATGGACATCTGATTCctcctgccacacacacacacacacacacacacacacacacacacacacacacacacacacagtcccagGAGCCACTGCCATGTGCCGCCCGCCTTGTGCAAGTGTCCACTAGAAGTCCACTGTTTCTTGGCTGTAGCTGACTGAAGGACTGCACTGGGGCTGTCAGTGCATTGCACCTGCATGTTTTGGGGCAATAGTCTTCCTCCAGGCAAGTTTGAGGATCCTGAGAGCCAAGGGAGACACTTCAGTGAGGAATTTTCACATGGCTGAGACAATCTGAGGtgatttattctttctttccctggttttgttgtttctgctcATACAGATCTCTATAAAACCCTGATCTGCGAAGCTTATGGTGAAGGAAACccacaaggggaaaaaaaaaatccacatcaGTTCTCCTGAGTCCGCCGTCCGTGGACACCTTCCTGGCCGAAGCCGCAATTTTCTGATGCCTGTTGCAATAAGCTGTTGAATACAACTACATGTCTGTTACCTGAATAAGTCCCTAAACATATGTCACAAAAACGGGAACCAGTATTCATCTCCtaactctttttcttttcttgatcTGTAATTGTTCATACTTCTTAATATAGCACCGCCTTGCATCATGGTCCTTTTCATTGTGACATAATGACATTATGCTGTTGCGATAAACGCACATCACTTTTTGTTTATAGAGCAGCCCTACTGAAGCAGTAGATGTATTTATGCTTGAGAGCTCAGGGATATATACACGGGAGCTTTATCTGAGGTAATTCTAccaaataaaaaaggagaaactgaaaaatcaGGGACACTTGACTGAAGACACGTTTTGATATTTTTGAGCAAGACCCATGTCCAACATTTTGGGGTTttccttcattttgttttgtttgttgttttttaatttaagtattggtcgatttatattttgctttttatgcTCTTCCATGTTCCGTTTTTTCGCAGTGaaatatcttgtattttattgttctgGCAGTCCTGCAACACCAAATAAACCCTATTTGTGAAAGAGGCTTGCAGCTAGAAATGTTGTAGGGTAAAAAATTAATCAGCTTCTTAATTGCCAGATCAGTAATTAACTTTTCTCACCTAACTTTTAGAACTGCTCTTGAAGCATGTAATAGgcaatgttttttatgtttttggttttcttttaatatgaGATTCAGGTTAAGTTTGCACTGGGTGTCTACAGGTCCTAGGGTTCAGATTGCTCTTCAGTCCTTCCAGTGTGCATCTTAACCACTAACACATAATGTATGCTTCCTATGCTGTATTGTGTGGTTCAGCTATTGTTTCAATCTGCAAAAAGCAAGTCAGTCATCTGTACAAACACTGTCTCTCAGGAAATATGGGGAAGTTTTTTTTGTGCTGTCTTCACCAGGAATTCCCAATTGTTCTGATCTCGCGTGGTTTATGCCCGCTTGGACGAGCCAGCTTTTCATGAGGTTTACATTTAATGGGTTCCTTGTCTCGATGTGATCGATATTACTTACATAGTCCCATGGtgacataatttacatttaaacatgttcaACCCAGTTTGTTcatatgtaaatacatacttcattgaaatgcacttttttttaataaagaaaaaatgacaATGTAGCCattaagcttaaaaaaaaaaagtaaagtgaatggaatgctttttatttttgcatacttTTAAAGGGTTCACAGTCAAAGCTTTTAAA

Function

GO: NA

KEGG:

id description
K09113 MLX; MAX-like protein X

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148377 lncRNA upstream 126880 19994126 ~ 19994329 (+) True G118410
TU148240 lncRNA upstream 542178 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 641253 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 647749 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 664226 19456142 ~ 19456983 (+) True G118285
TU148570 lncRNA downstream 127562 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 150944 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 220493 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 225562 20377288 ~ 20381442 (+) True G118601
TU148629 lncRNA downstream 287234 20438960 ~ 20443229 (+) True G118608
AMCG00018767 mRNA upstream 2067 20111903 ~ 20119142 (+) True AMCG00018767
AMCG00018769 mRNA upstream 10022 20099063 ~ 20111187 (+) True AMCG00018769
AMCG00018768 mRNA upstream 23467 20095125 ~ 20097742 (+) True AMCG00018768
AMCG00018763 mRNA upstream 38061 20057838 ~ 20083148 (+) True AMCG00018763
AMCG00018764 mRNA upstream 85547 20026952 ~ 20035662 (+) True AMCG00018764
AMCG00018773 mRNA downstream 37864 20189590 ~ 20197104 (+) True AMCG00018773
AMCG00018772 mRNA downstream 50702 20202428 ~ 20207454 (+) True AMCG00018772
AMCG00018774 mRNA downstream 159432 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018775 mRNA downstream 170692 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018781 mRNA downstream 222311 20374037 ~ 20374747 (+) False AMCG00018781
TU148369 other upstream 146479 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 670581 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1399866 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 2138906 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 2139095 17981210 ~ 17982114 (+) False AMCG00018681
TU148559 other downstream 107651 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 222270 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 362434 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 441010 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 441640 20593366 ~ 20594139 (+) True G118636

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059896 True 1753 mRNA 0.54 10 NC_007116.7 3819190 ~ 3839285 (-)