RNA id: AMCG00018772


Basic Information

Item Value
RNA id AMCG00018772
length 3313
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00018772
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20202428 ~ 20207454 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCACGGCAACGACCTTCCCTTTAACGAGCCGGGGTCAACGCGGTCGGCGTAGTCACCCCAACTAGCTGGCCAGAGAGATGTGCATTagaaaatattagaaaaatatgaacGGGCTgctggaaatggaaagaaatgctCCTAAAAATGAGTCCGGTTTCACGTCTTGCCTCGTCTCTTTTCAGAAGGTCGAAGTCATGAGGACCCTCTATATATCTCGAAGAGCACGCTTGTCTGCCTGGACAGTCCTCTTGATTTCAGGGTTTTGCATCCTAGTCATGAGTGTACAATTCAACTTCACTGTGGTACCAGCATCAACAGATGGAACGCAGAAACAGATTTTTAGATTTTGGAGACATAGCTCTCCTGCAAACCCTGCCAGTGCAGCATCGCAGCCCCCGGACATCAATTTCAAATGCGAGGGAAATGTCAGCAACCAAGACATCCCAGAAAATCTCCCTGAAAGCCACCGCGAGTTcctaaaatacaaacactgtCGCAGATTCCTTACTCTGAAGAAGCCCAAGAAGTGTGAGGACAACCTTCGCCTCTTGCTGGCAATCAAATCGACCGCCATTAATGTGGACCGGAGAGCAGCCATCAGGAACACATGGGGCAAAGAGGTGGTCATCAGGGGGAAGAAGGTCAAGCTTGTGTTTCTTGTTGGCCAATCGTCAGATACAGTCAAAGGCAAGCCCCTCCACCAGCTCCTGTCGTATGAAAGTAGGGAATTTGGAGACATCCTACAGTGGGACTTCGTGGACAACTTCTTTAACCTAACCCTAAAGGAGATCCATTTTCTATCGTGGTTCAGCCAAGAGTGCCAGAGCGCAGAGTTTGTGCTGAAGGGGGACGATGATGTCTTTGTAAACACAGGAAACATTGTGGAGTACATCCGGGATTTCAGTCCCGAGGCCCACCTTTTCGTTGGCGATGTCATTTTTTCAGCCTTTCCCATCAGAAACGACAAAGTCAAGTACTATATACCCACGGAAATGTACTCTGCAAAGCACTATCCGCCGTACGCAGGTGGTGGAGGGTATGTCATGTCCAGGAAGACTGTGATAAGTTTAGATCGTGCTGCGCAAGACATTGATCTTTTCCCCATCGATGATGTCTTTGTCGGGATGTGCCTCGAGAAGTTGAACGTGACTCTGGTTTTCCACCACGGCTTCAAAACCTTCGGCATCAAGAACCACGTCAACCCCTTCGACCCATGCATATACAAGGAGCTGATGATTGTTCACAAACTGAATCCCACAGAGATGTGGATCATGTGGACTTTAGTGAATGATGAAGACATGAAATGTGCCAGGAATATAGTGGTGAAGGGCTGAAGCTCAGTTCAGTGACAGGGTTGCAGTTGTCTTCCTTGTGTTTCCAGGCAGCCCTGACTATTTATTTgggggacaaaaataaaacgtttcaattgtattttgttgttgtggttgttatgTTTTAACCTGGGGCTGTCTGTGGTGATGTTCGAATACGTTATTGGTTCACGGGCTTATATTAATCTTTAAGGGGCTGAATGATGCCCATAAGGGTGGCCATTTAATAGCCTGAAAAACGTATTACAACCAGTGATTTTTCCTGGCTTTGTTAAAGGATCGAATTCACCTATATGATTGGCAACACTCCTTGCTAGAAGTGCCAAGTCACACGTTTGGGCCAGACTTTATGATGTGCTAATTGAGGTGCAATGGATGGATGCAAGTGATGTCCCTTTTGTCGCAATCAGAGGTGCTGTCCTCACTTCACCCTACTGATTTCTGTTAACAGTTTGaacttttaatttgtgttctgaAACTCTCCAGGAGAGTGAGTTCAGTCCTGCCTCTAATCTCTTCACTTTGTATGTGTCTTTATATTGTGTGTCCCTTGTTTTTCAAAGCCATCTGGTAAATCAGTGTACATACAATGTGATTAAAAGTGAGGGGTTGAgcaaaaatgataaatatttatgaagAGCTTGCCTTCATTTAGTTGGTGCTTGTAAGTATCAATGTATGTGAATGGTAGGCTTGTTACTGATACAAATGTTGCCAGAAACTCTTGCCACTTTGCCATCTTGACAACCAAGTTCTCATTCACCGATTTAGAATTAGAATGATTTGAATAAGCATTGACTATAGTGATACACAATCAGAGTGTATACATTGTGTAAATGCTATTAACTCTTTATGTTCTTTAATGTAAAATAGTAATTTCTGTGCAATAAGGTGGGGGTAAAACCCTGCTTCTCAAGTAATACTGTTTTAGTCACCTGAAGCTTTGCTAACAGACAAATCTACATTTTTctaaaaaatcaaaaacatacaaatttaaattgggGATGGTTATTGTGACAATCGGCTCCTCTGTTACGGCTTATATCTTTACTGTAGTTATTTGGAGAGGAGGATATGGCTTTCAATAAAGCGTCCTTTTAGCCAACATTCATCTTTAGAGTAACTTTTCAGAGACAATCTTCACATTTCTACTGTAACGTAActataataatgttaaatgaaTTGCTCTCTTGGCATGATTAAGCAAAACTGATGTGCTTAAATGTCACCTGAGCAGTaccacttaaaaaacaaaaatgtttgctttgtcCTGTTCCGGGACTGCAGACTCTTTTCATTGCTCAGGGAGTGACTCCTTTccctaaaacaaatgtatctataaattattttgttattgttaattaaaaatagacctttgTGATGTTGTAAAGCAAATAAAGGTTACAGGAATAAAGGGTATTATCTTTATAACAATATGGAAATGTGTAAAGAATTGGACAATCAAAGGCTTTTCTACTGACCtgcattattttagtttctctGCTGTTGTGTGTGGTTATTTGTTTCCCATGACAGCTGGGTAAGGTCTGAGTCATGTAGCCACATTAACAGGAAATGGAAAGGACTTATTTATCAACTTATTTTACAACTGCAGAACACGAGTGCTACTGTGCATTACCATGtaacatttgtaatgattgacTGGATTAAGTGGTTCCAGTTTCTGGGTGTTTGAAactctacaatatatttaatctcCTTGAGTATCTGTGTTGATTTGTGCCATGTTTTTGGCACTAGATGGAAAATAACATTGAGAACCACTATTTTTCCTATTGATAGGACTTttagaaataacaaatgcaCTAGCGTGATTGTTGATCGTGATCAAACCGTAAGACATGTAGCTGGATTAGTGTATTTTCTCACAACAAGGTTCAACTGTCAACTCCAGGCCTTCTGAGATGAACATGAGTATCAAAGCAATAAAGATGTTCCAACATATAACTGATTCTGTGAT

Function

GO: NA

KEGG:

id description
K07971 B3GNT4; beta-1,3-N-acetylglucosaminyltransferase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148377 lncRNA upstream 208099 19994126 ~ 19994329 (+) True G118410
TU148240 lncRNA upstream 623397 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 722472 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 728968 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 745445 19456142 ~ 19456983 (+) True G118285
TU148570 lncRNA downstream 71834 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 95216 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 164765 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 169834 20377288 ~ 20381442 (+) True G118601
TU148629 lncRNA downstream 231506 20438960 ~ 20443229 (+) True G118608
AMCG00018773 mRNA upstream 5324 20189590 ~ 20197104 (+) True AMCG00018773
AMCG00018770 mRNA upstream 50702 20121209 ~ 20151726 (+) True AMCG00018770
AMCG00018767 mRNA upstream 83286 20111903 ~ 20119142 (+) True AMCG00018767
AMCG00018769 mRNA upstream 91241 20099063 ~ 20111187 (+) True AMCG00018769
AMCG00018768 mRNA upstream 104686 20095125 ~ 20097742 (+) True AMCG00018768
AMCG00018774 mRNA downstream 103704 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018775 mRNA downstream 114964 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018781 mRNA downstream 166583 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018784 mRNA downstream 175675 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018783 mRNA downstream 200619 20408073 ~ 20433655 (+) True AMCG00018783
TU148369 other upstream 227698 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 751800 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1481085 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 2220125 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 2220314 17981210 ~ 17982114 (+) False AMCG00018681
TU148559 other downstream 51923 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 166542 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 306706 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 385282 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 385912 20593366 ~ 20594139 (+) True G118636

Expression Profile