RNA id: AMCG00018773


Basic Information

Item Value
RNA id AMCG00018773
length 1704
RNA type mRNA
GC content 0.56
exon number 10
gene id AMCG00018773
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20189590 ~ 20197104 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCTCATCCACTGTTTCTACTGCTTTTGAAGAGCAGCTCCGGACTTTGTGTTTGAAGGATTTTCCTTGTGGACTTGTAAACTGGGTAAGCTGTCAAACATTTACTGAGAATGCATTGAAGCGTGTGATATGCTTTGTGTGCCAACGTTTTGCTCTGGTCTTGTTCTGGTACGAGGCAAACAGCGATCCAGAGAGGGGGAGCAGCTCGGGGCGCAGAGGGCAGGAGAAAGCCCAGTGGGAGGCCGGGAGGGAGGATCCGGAGGCCCTGATCGAGTACCTAAACAGTAACCTGTCACCATGGAAAATGGAGGCGCTCTGGAGCCCGCAGGCAGGTGGACTGAGGGAGCTGGCTGTGAGGAGTCCGGGCTGTATCCACTGGGACTTCGTCTTCGCTTACTTTACAACACTGCGCATTGTGGACAAGGGAGTGTCGGCTGTGGACGCTGGTCTGCTCAGGTTCGTCAATCTGGAGGAGCTCATACTGAGCGCAAACCGCATCTGCGACATAGACTCACATCACCTGCCCAGGACACTGAAGGTGCTTGAGCTGTGTGCCAATGCGATCTCCAGTATGAGCGGCCTCTGCAGTGACCCCCCTCCCGGGTTGCAGCACCTGGGTCTGGGCTACAGCAAGCTCTCGTCCCCCGCGGATTACAGATGCCTCACAGCAGCCTTCTGGCCCAGGTTGGTCTCTCTGGATCTGAGCTTCTCTGGGTTTGTGGAGCAGCTGGGCCTGCTGGACGCTCTCGCCACCCTGCCCTGCCTCCGGAGCCTGGTGCTGCAGGGGAGCCCGCTCACCCTCACCCCCTCCTACCCCGGCTTCACCCTGGACAACCTGCCTCGCCTCACCTTCCTGGATGATGTTCGCATCTCCCCTGATGACCGGCACTGCTTCTCTGGACTGGCCAGGAGGAGAGATGTGATTGCAAATGAAGCTGTGGTGATTGTGACGATTGGGAAAATGAAGGGGGTTCCTGATCCCCATCTGCCTTCAGAAGACACCACCGTCGAGTTTCCTCTCGTCACTTACAGCTACTATGTGACCTACGAGTTCCTCGCCTGGGCTGAGGTGATGGACCACGAGTACAAAGCTGTCCATCAGACCAGGGACTTGACAGCCCTGAGAGCTTTCTTCTTGAGGGGTTTGCAAGTGACAGTGGAGGAACAGAAGGCGCTTTCATGGCCCGTCGGCCCAGCAGAAAATTCCATTGCAAAACCTGCTTCTGACAAGAGAGGAGGGGGCAAGGAAAAAGAGGAAGGCAAAGGCAAACCCAAGGACaagaagaagcagaaggagCCCCAGGTGGAGATGAGGCAGGACCCTCCAGTGCGCAGAACTCTGGGCTGTGTCAGTGTGGAGCTGCAGGCACTGCTGTGTGGAGAGAGTCACACTGGCACTGTGTGTGACTTTGGAGTCCTGCACACTCCGCACAGCTCGTTTCTCACCAGGGAAAAGGAggtcaagaaaacaaaagaagatagaaagagggaggagaagaaagcCGATTCTGGACGAGACAGCACAGCCAGTCAGAGGGCTTGCACCTCTTCCAAAGGTAAGGCCAGAACTAAAAAGAACTCTGAGGCTGACGTTGTGACAGATACAGCGCCCAGCCCACCCGATCCCCTGACACTGGAGTTCACTGTCAAGTTAGACAAATGGCTGACGGCAGCAGAAGCCTGCAATTCCCAGTATGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148377 lncRNA upstream 195261 19994126 ~ 19994329 (+) True G118410
TU148240 lncRNA upstream 610559 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 709634 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 716130 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 732607 19456142 ~ 19456983 (+) True G118285
TU148570 lncRNA downstream 82184 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 105566 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 175115 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 180184 20377288 ~ 20381442 (+) True G118601
TU148629 lncRNA downstream 241856 20438960 ~ 20443229 (+) True G118608
AMCG00018770 mRNA upstream 37864 20121209 ~ 20151726 (+) True AMCG00018770
AMCG00018767 mRNA upstream 70448 20111903 ~ 20119142 (+) True AMCG00018767
AMCG00018769 mRNA upstream 78403 20099063 ~ 20111187 (+) True AMCG00018769
AMCG00018768 mRNA upstream 91848 20095125 ~ 20097742 (+) True AMCG00018768
AMCG00018763 mRNA upstream 106442 20057838 ~ 20083148 (+) True AMCG00018763
AMCG00018772 mRNA downstream 5324 20202428 ~ 20207454 (+) True AMCG00018772
AMCG00018774 mRNA downstream 114054 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018775 mRNA downstream 125314 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018781 mRNA downstream 176933 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018784 mRNA downstream 186025 20383129 ~ 20398337 (+) True AMCG00018784
TU148369 other upstream 214860 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 738962 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1468247 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 2207287 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 2207476 17981210 ~ 17982114 (+) False AMCG00018681
TU148559 other downstream 62273 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 176892 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 317056 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 395632 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 396262 20593366 ~ 20594139 (+) True G118636

Expression Profile