RNA id: AMCG00018774


Basic Information

Item Value
RNA id AMCG00018774
length 1110
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00018774
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20311158 ~ 20312556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGATTCCTCTGTTTCTGGGggctgatttattttcaaaaacaggCATCCGAATAGAGAACCATACAAGATTTCATGCCAAATTCTCAAAGAAAGGACTGGCTACTAAACTGAATTTTTCTTCCGATTTTCGAGTTCATGGAATGAGACTTCCCAGCGGGACCAACAGCCTTTGGTTCTACAGCGTTCAGGGGCTTTTCCGTGTGGCCTTTGAAGTGTATAGCAAGCAGGAACAGCTCTCTGTCCTTGAAACATTTCAGGACCTGTGGAAGTCTAGAATAAATGATGGACCCCTAAACCCAAGTTATGATTTGAGTGTTCAACTGAATATTTCAGAGCCCTGCAACCCCATTGAAATGCACAATCAAGACTGGATGCACAGACTTCAGACAGGAACCTACGCAGCACAGAATTCCTATGTTCTAGAATCAGAAACTATAGCCGAGTCCAATCCAGGTACTCCATGTTGGGCAATATCTTCCATTTCCTCCACAGTTGATCACAACTACTGCAGTCTAGAAAACGGGGACTCGTTAAATCCTTCACTTCTGTCTTACCGGGTGACTCAGAAAATCAAAAGCTTAGACAATTTGTTTCAGAGCTATGCAAAGGATATGCGAAATGAACAGAACGAAGTGATCCTACTTCTTTTGGATCACATAGAGCAGTATGTCAACCAGGaattcaatgaaaataaattggcaGATATCGTGTTACagattttaaatacaacatataATCTGACCAAGGACCAAACCCCCGGAGACATGAATTCAGTTTACAACAGCTGCTTGCTTTCTACAATAGGCAGTTGGTTGGGACAGCAGTTCAATGTGGCCAATGCTTGTATTAGCAAACAGATAGAGGGATTTAAACTAAGCCACATTGACAGAATTACCGATCTGCCACCAGCCGAGGAGCTGGTCAGCCAGTTGTTTCCAGAGTCCATGAAAATACTGCTAATGAACTGGATGGGATTGAGTGACGCCACTGCGGTGTGGAAACGGCACAGCGAATACCCTATACTGCTTCTCATCCTAGAATTTGCCAATCACAACCTCATCACTGGAGTTGCACACGTATTATACTCAagtttaatatgcaaataa

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0016592 mediator complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148577 lncRNA upstream 8200 20302670 ~ 20302958 (+) True G118572
TU148570 lncRNA upstream 11328 20279288 ~ 20299830 (+) True G118566
TU148377 lncRNA upstream 316829 19994126 ~ 19994329 (+) True G118410
TU148240 lncRNA upstream 732127 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 831202 19479691 ~ 19479956 (+) True G118291
TU148612 lncRNA downstream 59663 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 64732 20377288 ~ 20381442 (+) True G118601
TU148629 lncRNA downstream 126404 20438960 ~ 20443229 (+) True G118608
TU148639 lncRNA downstream 178305 20490861 ~ 20491106 (+) True G118618
TU148641 lncRNA downstream 187118 20499674 ~ 20500210 (+) True G118620
AMCG00018772 mRNA upstream 103704 20202428 ~ 20207454 (+) True AMCG00018772
AMCG00018773 mRNA upstream 114054 20189590 ~ 20197104 (+) True AMCG00018773
AMCG00018770 mRNA upstream 159432 20121209 ~ 20151726 (+) True AMCG00018770
AMCG00018767 mRNA upstream 192016 20111903 ~ 20119142 (+) True AMCG00018767
AMCG00018769 mRNA upstream 199971 20099063 ~ 20111187 (+) True AMCG00018769
AMCG00018775 mRNA downstream 9862 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018781 mRNA downstream 61481 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018784 mRNA downstream 70573 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018783 mRNA downstream 95517 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018789 mRNA downstream 145409 20457965 ~ 20463349 (+) True AMCG00018789
TU148559 other upstream 50218 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 336428 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 860530 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1589815 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 2328855 17981210 ~ 17982303 (+) False AMCG00018681
TU148611 other downstream 61440 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 201604 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 280180 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 280810 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 289400 20601956 ~ 20603315 (+) True AMCG00018792

Expression Profile