RNA id: AMCG00018775


Basic Information

Item Value
RNA id AMCG00018775
length 6706
RNA type mRNA
GC content 0.48
exon number 62
gene id AMCG00018775
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20322418 ~ 20348942 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTGGAATGACGTAGAACTGTTGACAAGTGACGACACAAGCTCAGGTCGGCTATGCATCGACTCCAGACAGGAGTGCGGCAGTGCCTTGTATCAGGTGGACACTTTGGTCAAAGTCTCTTCGTCCGAGAAGGTGCGGTCCAATCCTAACCTGTATGCCTGCAACAGCTGCCATGGCACTATTCTTGTTGCAGATAAAACGGTGGTGCTTTTCGATCAGAACTGCCAGTCTGTGTTGCTGCAGCTTCaatttggtttgtgttttcacacactgtctttaagattaaaaacatatagAGGTATTATTTGTATAGGCTCTGTAATGAATTCAAAATACTGTCTAATTTCAGATTCTGACGTAGACACAGTGGGCCTGTGCCAAGAAGGCCAGTTTTTGGTGGTTGGAGAGAGAAACGGAAACATACATCTTAATTATGTGGCGTTAAAGAAGACAGTGCTGACGAAAgcTTTGGTGCAGAGGCCTGTCAATGACAATGAGATGACATACAAAAATCTTCTCATTCAAGAAGATAAATCATTGCCAGGAACATACCACATGTTTCTGCTGGTATCAGATGGGTTCTTTCAGATTTCCAACCTACATCTGGAGAAAATTCAGATTGcCATCGAGAAGATGGATTTTGGTGCCTTAAAAGAGCTTCAGAATCCCATTAAGATTGCTTTCTTTTCCACTGAAGAGAGACACACCAATGGTTGCCAGTATGCTGAGACAGCTGAACTGGCAAATAACATCCAGCTCATAATTGGGGGCAGTGGACGCAGTGTGCTGTCTAAGTGGGAGATGGACCTGGTTCAGAAAACATTGTCTATTAGCAATGATGTGGACTGCAGTTTATTGGCAGgaGTGAAAAAAAGCCAAACTGTGGATAATCTGATGTTTGTTTTGGATGATGAGAATGTGTTGACCATGTGGGATGTGCATTCTCTGGTGATGGTTTGGTGCTGGCCTTCACTTTCCATCCAGGACTTCCTGCTCACTACAGAAGGAGATTCTGCTTCAATGGCCATGCaagaaaatgcaaatctgaAGCTCATAGCCCTCACGACACAGGACAACAGACTGATGAGGACTCTCATGGTATATTCTCTTCCCTCAATGACCCTTCTGTATTCATTGGAGGTCTCTGACATTTCCTCACTGGTCCAGACGGGAATCAGCACGGACACCATATATTTACTGGAAGGAATACACGAAGACCAGGAAAGGTCCGATGGGATAGTTTCTGCAGTAGTAATGCGATGTCTGACAGAGGCTTTGCCAGAAAACCGGCTGAGTCGCCTTCTCTATAAGCATAAATTTGAAGAGGCGGAGAAGTTTGCCATCCAGTTTGGACTTGATGTTGAGCTCGTCTACAAAGTGAAGCTGAACTTTGTGCTGGAGAAGCTGGCATCAGCTTCAGTTGGGGGCTATGGGCAAGCTGTCTGGGCGGACCTGGTGGATGAAGCCAAAACCAACTTGCAAAAGATTGTGGACGAGCAGTTTGTAGTGCAGTACTGCATCAACGCTCCCTGGCCTACATTCGACACTGCGCAGGAGATGCTCAACTACGCAAAATCCAGAATTCTGGAGGCTCTTGCGAAACTCACTACCTTTTATGGTTCCAGCGGCCCGGAGAAATTTAGTGGAATTTCCTGGATTGAGTTCTTGAACAGCACTGACCTCCTGAGTGACATAGTGTGGCATCTGAAGGAGAGAGACCTGATGTGTGCCCAGTATCTGTGGCTGCGGCATCAACCGGAATTTGAGAGGCAGTTTGATGAAAAAATGTTGGAAACACTACTCGGTACGATCCCTGAAGATATCCCGTCTCGCCATCTGTGCCTGTGGTTTAAAAGTGTGATCATCCCATTTGTGAGAAGAATAATCCCTAAAGGACAGAAAATGCTTGCACAGTGGTTGCAAGAGAGGGCAAGGAACTTGGAGTTAACAGAAAAGtgTAACTGGCCAGAAAATGGACTGGAAATGGCCGAACTATATTTTGTATCCAGAAACCCCAATGAATTAGGATTATCTTCTTCCTGGATTTGGATCCCTTTGAAGGAGGATGGGGACTGTGAGGAAATCCAGCAGTTGAAAGTTCTGGTGGGCAACCTGCGGCAGCTGCTGGACCTCTACAAGAAATACAACTGCAGGCTGCCACTCTCGGACTTCGAGAAGgaaAATACAACAACCATTGCTTTCCTGATGCTGGACAAGGTTTTGGCTCCAGAGCTCATCCCCTCGGCCATGGAGAGTGTAATAAAGCCCTACGCCCAGGAGCACGGCCTGCAGCTGGAAGAGCTGCTGCTACAGTACATCAAGGATCTGCTGGAGCGCTGTAGTTCTCGCACTGCCTCTTTCTTCGAGACGGAGTGGGAGGCCAAAGCCATGGCTGTGCTGGATTGCATGTCTGATACTGATCTGATCTTCGACGCCGTGCTGCAGATCATGTACAAAGCTGTCGTTCCCTGGAGTGAAGCGGTGGAACATCTGGTCCAGCAACATCTGGAAATGGATCACCCCAAGGTGGAGCAGCTCCAAGAGAGCTACAGGCTCATGGAAATGAAGAAGCTGCTGAGAGGATATGGAATCCGAAGCTTTAACCTTTCTGATGACAAACAGATCATGAAACTGGTGAAGTATATTCTGAAGCAAGACCTACCCTCTTCCTTAGAAGACGCATTGAAAGTGGCTCAAGCCTATATGTTACCCACCCCAGAAGTCTACATTATCCACATTGTTCAGCTCGTCAACCGAGACAAAAGCGAGGAGTGTCTGAAACTTCTGAAACTCCTTCCGACCAGTGAGGCTGAGTGCATTTCTGAGAGGTTAGCCGTGTGGGCTCATCTGCAGCTGCAGGACCAGACCGATACTTCAGAAGAGcACAAAAAATATCTAATGGCAGTGGCACAAATGATGGTGGAGACACTGAAATTCCTGCAGAGCATTCAGAAAGACAACACTTTAAAAAGAATGAAGTGTGAAAATAATCTGAAGATGTTTGAAGCTATTGCGCACTTACAGgAAGACTTTGACATCTTCCTGTCCTTAGAGGACTATGAGAACCCTGCTCTGCTGGCCCAGTTCCAGGAGGAGCACGTCAAGGCCTACGAGGGTACGCTGTCCAGGGCCCGGACACGGAAGGCCTCGGTGGTTGCCAATGATGCTGACGGCAAGACCAAGACCATCTCCACAGAGGCTGGGCTGTACCGGCTGGCCCTGCTGCTGCAGCGCTCTGAGCAGGAACTGGGCGCAGACCTGGCCATGAGGGCACTGGCCGTGGGCAAGGTAGAGAAGGCCCTGAAGATCTGCAGGGAGTTGTATCAACATCATTGTAATGCCAAGACTGGACAAGCACTCTTCAATGCTGCCCAGAAGCTCTGCCAGATGTTGGAGGCCAACGTTCCCATGATAATCCCTGAAGGAATGAATCTCCCTGCTGTAATCCATGACCTGGCCTGTCAAGCAGCCACTGTGTGCAGCACAGACCTGCTTCTGGACTGCCAGGAGCTGTGCAAGAACACCTTGGCTGCCATGGACGTGTATAGGCAGTGTCAGATTGATGACTACGGGTTCATAGCAAAGACGTCGCTGGGAGCAGACAGGGATCCATATGAAGAGTGGACCTTTGAGGACTTCTTCAATGAGGACGGCATCGTTCTGGACCCAGTCACAGCCCTGCCTGTTCTGTATGAAATTACTACAAGTACGTCTCAGAATGACTCCTTAATGACGATCCTGCTGAAGTTCTTATGTTCTCCCATGTCAAGGCTGTGCTTCATTGCATTTCAAGGGGCTTTGTTTCTTTACCCCCTTGATTGTTCCTGCTTGTCCAACTGTTCTTATGCTGGTGGGATGAACTTCCTGAAGCCCATGAAGGTCCCCATGAATGCAATGCTGCAGAACCTCCACGAGTGCAGTCAGCTGCAGCTGGCCTTGAGGCTGGTGGTCAACTCCTTCGGGACTTGCCTGCAGCACGTCACCTCCAACAATATGGCATTGGTTCTGAGCTCCAAGCTGCACCATCATCAGCATCTCATGGAAGACAGGAACTTCATACTGTCCCTGGGAGAGAAGACCATCTCTCTTATCAAGGACGCCTCCATGGCTTTGCTGCACAAGGTTTTTAACTGCAGAGTGGTGGACTGTGACCTGGCCATAGGATACTGCACTCTCTTGCCCAAGAAGGatgcatttgaaaagctgtggcatgttatcaacAACACTTGGCAAAACTACGACAAGATTctgAATTCGGTGAACGATGGCCTTTTGTTTCCATCTCAGGCTGTAGCTGTAGTTGGTGCCCATCTCTCCACTTtatataaagaagaagaagaaggtcaGAAGTTCCTGTCTCTCATCGCAGATGCTGAGTGGGGAATTGAGCTGGGGAAATTTGGAATTTCGTTCCAGTCTGTATTCCGACAGGCTCCTGAGAGAAAGAAGGATCTGATTACCACCTTGGTGAGGAACCGAAAAGTAGACTCTGACACATTTGACCTGGACAGTGACTCGGCCTTAAATCTCTACATCAAGACTCTGCTGCTTCATGGTGCAAACAACAATCAGAATGAAGATGGCCCAGAGACAGACGACTGCTCAACTGTGTGTCACAGAGAGACCCTGGCCACCGCGCTTGGAATAATCCCCCTGCTGACGAGCAGCCGTGATCTGGTCATCAGTCTGAGTGCAGCCATTCTCAAGctcagTCCCTATGATTACGAAACGATCGAAGGTGTTCTTAAAGTCATACAGACTGCGGATGAAAAGATCACAAGTCTTGATCTTGACCAGGCTTTAGGATTGCTGCAGCACCTGAAGTCCTACAAACGCATCTCTCCCCCGATGGACTTGGAGCATCACTACCTGCTGGAGAACTCCCTGGATGACTCCCCTCATGCCCACACAAGACTGCCCTTCCACCTCATCTTCTTCCAGACCTCCCACTGCTTCTGGAAGATCATCTCTGTGGAACTCAGTGAGGAGACTTTTCCCACTCTGCTACTGATCTCTAAACTGATGAAAGTGTGTTTGGACAAACTGTATATGTCCGCAGTGAACCATGTATTTGAGAAAAGCCTCAAGCCTCGATCCCTGCAGCAGGCCAAGGAAGGAAAATCTCACGCCATAACCAAAGAGACCATGAAGACTGTGGAGACCATTAAGGCCTACCTTCTCTCGATTAAAAACCCAGAATGGGCTGCGGCCACATCTCACAGGATCGCTCAGGAGCTCCCCACAGGTATTGAAAAGACCAGTGCcttaaagttctgtttgctcCTCGCTGAAAAATGGCTGAAGATCACCAATCCTGAGGATCCCACTCACGCAAAAGCAGAGATATTTTGGGACAAGCTGAAAGTGCAATACCAAAGGTCGGCCACTGAGAACACGTTGATGTCTCACCGTTTAAACTCTCCCGAGTACTTGAAGTTAACTGGCTTCCCTGCAAAACTCATCGTCTCCCTCTACGAGCACAGCAGCATTGAACAGCGAATCAAGATCCCGACTGGCACCGACTACCCTGACATACATGCTGTGGCCAAAGAAATTGCATCAATAAACAACATTGATTTGACTAAAATCCGGGATGTTCTGCTGGATAAATGGCTCTGCCAGAGTACCCGGCCAACTGCAAACGATAATAACGTTCAAGACTACATCACAGACATCCAGGAAGACCCTGAACTCATGAGAGTTATTTACTTGCTTCAGATGTACCCCATCGACTTCAGTGCACGGATGCTATATGCCATAGTGACAGCAGAAACATCTATTGCAGACACCACCATGCTGGAGTCACTCCTCAAAACACCCATCGAAAAAGTCAAGTATTACCTGAAATGCTGCATCTACCTCTCTGAATTTGAGGCCCTGAACATCCCGTACTCTGTGGAGTCCTTTCACAACAGTCCAAAGGAGGGCATGATCAAAGGCCTGTGGAAGAACCACAGTCATGAACCACGGGCAGTCAGGCTGGTGGCGGAGCTCAGTTTGGAGTACCAGGTTTATGATCCTCAGCTCTGGAATGGAGTTTTACAAAAACTGCTAAGTTTCAGCATGATCGGTTACCTGCGAAAAGTTTTGGTGGCTATAACTGCTATCCATTCTTTATGGCAAGTTCCAAATTTTGTGAGAGCTTGGAGGAGTGTCATTCTGGCACCTTTTCTCTCAGCCTCGGTACCCCTGAGTCCTCAACAGCTGGGGATGTTCTACGAGACTTTTGTGCTTCTTCTCAAGTGCCCTGTCCTCCTGGACCTGGACTTGATTGGCATTGCCAAGCAGTTTGCTCAGTTTGACCTGCCAGCCTTCACCCTGGGCACTCTTCTACTCATTCCCTGCTCTGAGAAGAAGGATCAGCAAATCCAAGGTTTCCTGTCTGCCAGCAATCTGGTCACTGTGCTTGAACAAGTGGAGGAGCACCTGAGCACTGGGGAGGTGGCTGGATTTTCAACACAGattaaagacattgtgctgagtttcatgtgcACAAATAAACTTTATGAGAAGCTTGTGCAGACCAAGCTGTTTCCTCTGCTGAAGCACCATGTCATCGTATCCAACCAAGTGAGGGACCTTGTGGACTACCTCGTAAACAGGAGCTGCCTCGATGATGCTGCGGGTCTTGCAGCAGAATACCTGAAGCACAAGGGGAGGCACCTCTCGGCCAACATGCCTGCAGCTGAGGTCTTGAAGATTACC

Function

GO: NA

KEGG:

id description
K11577 KNTC1, ROD; kinetochore-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148577 lncRNA upstream 19460 20302670 ~ 20302958 (+) True G118572
TU148570 lncRNA upstream 22588 20279288 ~ 20299830 (+) True G118566
TU148377 lncRNA upstream 328089 19994126 ~ 19994329 (+) True G118410
TU148240 lncRNA upstream 743387 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 842462 19479691 ~ 19479956 (+) True G118291
TU148612 lncRNA downstream 23277 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 28346 20377288 ~ 20381442 (+) True G118601
TU148629 lncRNA downstream 90018 20438960 ~ 20443229 (+) True G118608
TU148639 lncRNA downstream 141919 20490861 ~ 20491106 (+) True G118618
TU148641 lncRNA downstream 150732 20499674 ~ 20500210 (+) True G118620
AMCG00018774 mRNA upstream 9862 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018772 mRNA upstream 114964 20202428 ~ 20207454 (+) True AMCG00018772
AMCG00018773 mRNA upstream 125314 20189590 ~ 20197104 (+) True AMCG00018773
AMCG00018770 mRNA upstream 170692 20121209 ~ 20151726 (+) True AMCG00018770
AMCG00018767 mRNA upstream 203276 20111903 ~ 20119142 (+) True AMCG00018767
AMCG00018781 mRNA downstream 25095 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018784 mRNA downstream 34187 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018783 mRNA downstream 59131 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018789 mRNA downstream 109023 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018782 mRNA downstream 128184 20477126 ~ 20484929 (+) True AMCG00018782
TU148559 other upstream 61478 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 347688 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 871790 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1601075 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 2340115 17981210 ~ 17982303 (+) False AMCG00018681
TU148611 other downstream 25054 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 165218 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 243794 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 244424 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 253014 20601956 ~ 20603315 (+) True AMCG00018792

Expression Profile