RNA id: AMCG00018777


Basic Information

Item Value
RNA id AMCG00018777
length 2325
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00018777
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20218377 ~ 20225057 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCAGCCTCAGCAGCACAGCGCCCGTGTTTCCTGTGTCACATGACCCCACGCCTGCTGCGCGTCACATGACCTCGCTGTCAGACGGGGTAAAGATGGCGGCGCACTTGTCTTACGGAAGAGTCAATCTCAACATATTGAGAGAGGCTGCGAGGAAGGAGCTGCGTGAATTCCTGGATAAATGCGCCGGGACTAAGGCAATTGTGTGGGATGAGTACCTTACGGGACCGTTTGGGTTAATTGCCCAGTATTCTCTTCTAAAGGAACATGAGGTAGAGAAGATGTTCACACTCAAGCCTGGACGCCTTCCCGCTGCGGACGTGAAAAATATTATCTTCTTCGTGCGGCCCAGACTGGAACTAATGGACATCATTGCTGACAACGTGATGAGTGAGGAGAAGATGCGTTCACACCGGGATTTCCACATCCTGTTCGTGCCGCGCCACAGCCTGCTGTGTGAGCAGCGCCTGAAGGAGCAGGGAGTACTGGGCTCCTTCATCAACATCGACGAATACATCCTGGATCTCATCCCCTACGACGGAGACCTGCTGTCCATGGAGTCGGAGAGCGCCTTCCGGGAGTGTTACCTGGAGAATGACCAGACCAGCCTTTACCACACAGCAAAGGGGCTGATGACTCTGCAGGCTCTCTATGGAACCATCCCTATGATCTTTGGCAAAGGGGAGTGTGCCCGGCATGTAGCCAACATGATGCTGAGGATGAAGAGGGAGTTTGCAGGCAGTCAGAACCAGATCCTGCCCGTGTTTGACACGCTGCTTCTTCTGGACCGCAACGTGGACCTGCTCACTCCATTAGCCACGCAGCTCACCTACGAGGGCCTCATAGATGAGATATACGGCATCACCAATGGCTACGTAAAGCTCCCTCCGGAGAAGTTCTCCCAGAAGAAGCAGGGCGAGGCGGGCAAGGACCTGCCCACAGAGCCCAAAAAGCTGCAGCTGAACTCCGCGGAGGAGCTGTATGCCGAGATCCGGGACAAGAACTTCAATGCAGTTGGAGCTGTGCTGAGCAAGAAGGCCAAAATCATCTCTGCTGCTTTTGAGGAGAGACATAATGCTAAAACAGTGGGGGAAATCAAACAGTTTGTGTCACAGCTGCCACATATGCAGGCAGCCAGGAGCTCCCTAGCAAACCACACATCCATCGCTGAGCTCATCAAAGACATCACCACCTCAGAAGCATTCTTTGATAATCTGACGGTTGAACAGGAGTTCATGACCGGAGTGGATACGGATAAGGTGAATTCGTACATCGAGGACTGCATCGCCCAGAAGGACCCACTGATTAAGATCCTGCGTCTTGTGTGCATGCAGTCTGTCTGCAACAACGGCCTGAAGCAGAAAGTGCTGGACCACTACAAGCGCGAGATACTGCAGACGTACGGCTATGAGCATCTGCTGACCCTCAATAACCTGGAGAAGACTGGGCTGCTGAAGCCACAGACCAGCACCCGAAACAACTACCCCACCATCAGGAAGACCCTCAAGCTGTGGATGGAGGATGTCAATGAGCAGAACCCCAATGATATCTCCTATGTGTACAGTGGCTACGCCCCCCTGAGCGTGCGCCTCACACAGCTGCTGGCCCGACCTGGCTGGCGCAGCATCGAGGAGGTGCTGAAGATGTTGCCCGGGCCCCACTTTGAGGAGAGGCAGCAGCTCCCCTCTGGGCTGCACAAAAAACGCCAGCAGGGAGAGAACAGGACCACACTGGTGTTCTTCCTGGGGGGGGTGACCTACGCTGAGATTGCCGCCCTGAGGTTCCTCTCGCAGATGGAAGACGGAGGCACTGAATACATCATCGCCACCACCAAGCTCATCAACGGCACCAGCTGGATCAAGTCTCTGATGGACAGGCTGGAGGCGCCGCCCTTCTAGAGTGCGCTGGCCGGTAGGACTGGGCTCTTGGAATCCGGACTGGGGGACGGAGTTGGTCACACAGAGGGTGTGGAAAACTCGAAAGGGCAGCACATTTGCCAGCATGTGGGTTTGGCATAGTGCTTTGTAGCTTACATGTTCCTGCGAAATTATGTGAAGGAGGTAGCTAGTGGGAATCAAGAAAATTCTTTGTACATAAGCAGCATTTCCTGCGTCTCCTGTAATTTTGCATACTGTTATGTTTCTGGTCTCTGTTAGCTCAAGGCTGCTTGCCTGTCCTTTGTTAAGGCAAGTTCATGTTAAACTAATGCAGGTATAAAGAGTGATAAAAGCTATAACACTATTGCTCCTTTCATTTTGTCATATTTACAAAAGAATCCAGCATTTCTTCTGTctctttgaataaataaatgtatatataaacctc

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K20182 VPS33A; vacuolar protein sorting-associated protein 33A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148532 lncRNA downstream 1198 20214770 ~ 20217179 (-) True G118536
TU148510 lncRNA downstream 50046 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 65390 20152727 ~ 20152987 (-) True G118515
TU148494 lncRNA downstream 93889 20116451 ~ 20124488 (-) True G118502
TU148464 lncRNA downstream 136714 20081388 ~ 20081663 (-) True G118479
TU148709 lncRNA upstream 213902 20438959 ~ 20443273 (-) True AMCG00018788
TU148726 lncRNA upstream 257827 20482884 ~ 20485106 (-) True G118692
TU148731 lncRNA upstream 381771 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 419828 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 454223 20679280 ~ 20679555 (-) True G118715
AMCG00018771 mRNA downstream 123871 20087140 ~ 20094506 (-) True AMCG00018771
AMCG00018765 mRNA downstream 168134 20036729 ~ 20050243 (-) True AMCG00018765
AMCG00018766 mRNA downstream 185870 19991333 ~ 20032507 (-) True AMCG00018766
AMCG00018760 mRNA downstream 261110 19923370 ~ 19957267 (-) True AMCG00018760
AMCG00018761 mRNA downstream 305105 19894850 ~ 19913272 (-) True AMCG00018761
AMCG00018780 mRNA upstream 4114 20229171 ~ 20279538 (-) True AMCG00018780
AMCG00018778 mRNA upstream 78707 20303764 ~ 20309717 (-) True AMCG00018778
AMCG00018779 mRNA upstream 88128 20313185 ~ 20321631 (-) True AMCG00018779
AMCG00018776 mRNA upstream 124519 20349576 ~ 20362936 (-) True AMCG00018776
AMCG00018786 mRNA upstream 151968 20377025 ~ 20381267 (-) True AMCG00018786
TU148462 other downstream 138495 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 230209 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1170800 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1744132 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2614529 17603356 ~ 17603848 (-) True G117899
TU148710 other upstream 219440 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 265154 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 378461 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 378461 20603518 ~ 20605820 (-) False AMCG00018794
TU148773 other upstream 471777 20696834 ~ 20697827 (-) False G118727

Expression Profile